TCONS_00046482 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046482
Unique NameTCONS_00046482
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length327

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046482 ID=TCONS_00046482|Name=TCONS_00046482|organism=Clytia hemisphaerica|type=transcript|length=327bp
TTATCAAAAATGATTACGAAGAAAAACAATGGACAGCTTATCGAATTTGT
ACCGAGCACCCTGCAAAGAAATGGCACAAAACATCCGTTCAAAACTTAAT
CAATCGATTTAAGCAGTATGGTTCAATGGACAGAAGACCCGGATCTGGGA
GACCAAGAACTGTTACAACACCTGAGAATGAAGCCTTAATTGATGAATTG
ATATGTTCTCAAGAGGACAACCCTGGTACACATTTGTCACCACGGGAAAT
AGAGAAATACACTGGAATTAAGAGATCATCAGTTATCAGAATGGTAAAGA
GAAATGGTTATTAACAGTACAAGCGAT
Run BLAST on NCBI

protein sequence of TCONS_00046482-protein

>TCONS_00046482-protein ID=TCONS_00046482-protein|Name=TCONS_00046482-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
IKNDYEEKQWTAYRICTEHPAKKWHKTSVQNLINRFKQYGSMDRRPGSGR
PRTVTTPENEALIDELICSQEDNPGTHLSPREIEKYTGIKRSSVIRMVKR
NGY
Run BLAST on NCBI

transcript from alignment at scaffold_111:24061..24387

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046482 ID=TCONS_00046482|Name=TCONS_00046482|organism=Clytia hemisphaerica|type=transcript|length=327bp|location=Sequence derived from alignment at scaffold_111:24061..24387 (Clytia hemisphaerica)
ATCGCTTGTACTGTTAATAACCATTTCTCTTTACCATTCTGATAACTGAT
GATCTCTTAATTCCAGTGTATTTCTCTATTTCCCGTGGTGACAAATGTGT
ACCAGGGTTGTCCTCTTGAGAACATATCAATTCATCAATTAAGGCTTCAT
TCTCAGGTGTTGTAACAGTTCTTGGTCTCCCAGATCCGGGTCTTCTGTCC
ATTGAACCATACTGCTTAAATCGATTGATTAAGTTTTGAACGGATGTTTT
GTGCCATTTCTTTGCAGGGTGCTCGGTACAAATTCGATAAGCTGTCCATT
GTTTTTCTTCGTAATCATTTTTGATAA

Coding sequence (CDS) from alignment at scaffold_111:24061..24387

>TCONS_00046482 ID=TCONS_00046482|Name=TCONS_00046482|organism=Clytia hemisphaerica|type=CDS|length=312bp|location=Sequence derived from alignment at scaffold_111:24061..24387 (Clytia hemisphaerica)
TTAATAACCATTTCTCTTTACCATTCTGATAACTGATGATCTCTTAATTC
CAGTGTATTTCTCTATTTCCCGTGGTGACAAATGTGTACCAGGGTTGTCC
TCTTGAGAACATATCAATTCATCAATTAAGGCTTCATTCTCAGGTGTTGT
AACAGTTCTTGGTCTCCCAGATCCGGGTCTTCTGTCCATTGAACCATACT
GCTTAAATCGATTGATTAAGTTTTGAACGGATGTTTTGTGCCATTTCTTT
GCAGGGTGCTCGGTACAAATTCGATAAGCTGTCCATTGTTTTTCTTCGTA
ATCATTTTTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029667XLOC_029667Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046482-proteinTCONS_00046482-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046482-exon-scaffold_111-1491911889:24061..24387TCONS_00046482-exon-scaffold_111-1491911889:24061..24387Clytia hemisphaericaexon
TCONS_00046482-exon-scaffold_111-1510915933:24061..24387TCONS_00046482-exon-scaffold_111-1510915933:24061..24387Clytia hemisphaericaexon
TCONS_00046482-exon-scaffold_111-1575043694:24061..24387TCONS_00046482-exon-scaffold_111-1575043694:24061..24387Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_111supercontigscaffold_111:24061..24387 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	2.44147	0	0.405436	0	0	0	0	0	0.78919	0	0	0	0	0.335777	0	1.03662	0	0	0	0.425351	0	0.313394	8.06972	3.55107	0	0.17002	0	0.200916
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046482 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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