TCONS_00046493 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046493
Unique NameTCONS_00046493
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length594

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046493 ID=TCONS_00046493|Name=TCONS_00046493|organism=Clytia hemisphaerica|type=transcript|length=594bp
ggtgttgcCTCCCTTTACCCTCGACAGACATGGCTTTGAGACAGGTAAAA
GTTTGCTCAAGATTCTGCTTACCTCCGTTCTTCTCTAATTTTGGGACAAT
TGGCGAGGATGCACAACCAGCCATGGCACAGTTAGGCTTGCGTAATTCTG
GTATTAAAGAACCTATTTGCTAATTTATCCACCGCCTACATGCATATACA
TCACCATTTACAATGCGAACCCAATCCGAAAATGCCAGCACGTTCTCTTC
AATAAGAGGGCGCTGCGATCAAAATTCAGTCCCGGAGTGTAAAAGGCACC
CTCCATACAGTACGTCCAAAACTAACCGACATCTAAACAGTCTTTTTCAT
GAAGACAGGTAAGGTTTAGTTTCTGTGCTATAAAAAAAATGACGACACTC
TTCCCGCCAATCAAAAGGTAAAGGAGCCTTTCGTTACCTTACAAGCTTTG
AACGGGTAACTAAAATCTTCAAAGACTAGAGGTAGAGTTTGAACTAGTTA
CATCTCCTTAAATACTTAGCAAAAAAGGGCATGACCCTTAAGacagtttg
aaaattatttcattggaaaTATACCTAGTCCTGAATTGTTGCAG
Run BLAST on NCBI

transcript from alignment at scaffold_112:18358..18951

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046493 ID=TCONS_00046493|Name=TCONS_00046493|organism=Clytia hemisphaerica|type=transcript|length=594bp|location=Sequence derived from alignment at scaffold_112:18358..18951 (Clytia hemisphaerica)
CTGCAACAATTCAGGACTAGGTATAtttccaatgaaataattttcaaact
gtCTTAAGGGTCATGCCCTTTTTTGCTAAGTATTTAAGGAGATGTAACTA
GTTCAAACTCTACCTCTAGTCTTTGAAGATTTTAGTTACCCGTTCAAAGC
TTGTAAGGTAACGAAAGGCTCCTTTACCTTTTGATTGGCGGGAAGAGTGT
CGTCATTTTTTTTATAGCACAGAAACTAAACCTTACCTGTCTTCATGAAA
AAGACTGTTTAGATGTCGGTTAGTTTTGGACGTACTGTATGGAGGGTGCC
TTTTACACTCCGGGACTGAATTTTGATCGCAGCGCCCTCTTATTGAAGAG
AACGTGCTGGCATTTTCGGATTGGGTTCGCATTGTAAATGGTGATGTATA
TGCATGTAGGCGGTGGATAAATTAGCAAATAGGTTCTTTAATACCAGAAT
TACGCAAGCCTAACTGTGCCATGGCTGGTTGTGCATCCTCGCCAATTGTC
CCAAAATTAGAGAAGAACGGAGGTAAGCAGAATCTTGAGCAAACTTTTAC
CTGTCTCAAAGCCATGTCTGTCGAGGGTAAAGGGAGgcaacacc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029677XLOC_029677Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046493-exon-scaffold_112-1491911889:18358..18951TCONS_00046493-exon-scaffold_112-1491911889:18358..18951Clytia hemisphaericaexon
TCONS_00046493-exon-scaffold_112-1510915933:18358..18951TCONS_00046493-exon-scaffold_112-1510915933:18358..18951Clytia hemisphaericaexon
TCONS_00046493-exon-scaffold_112-1575043694:18358..18951TCONS_00046493-exon-scaffold_112-1575043694:18358..18951Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_112supercontigscaffold_112:18358..18951 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0898607	0	0	0	0.0981993	0	0.110913	0	0.0961858	0.20224	0	2.01932	1.63322	3.46249	3.12045	1.85536	2.99535	2.03323	2.476	0.795261	1.54727	2.15645	2.03236	0	0	11.252	7.01202	11.7954	13.1841
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046493 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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