TCONS_00046496 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046496
Unique NameTCONS_00046496
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length554

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046496 ID=TCONS_00046496|Name=TCONS_00046496|organism=Clytia hemisphaerica|type=transcript|length=554bp
GTCAAGCTTATGTCCTTTTTGGACATGCAAATCAGAAAAGTTGGGCGTCA
CCCAAATTATCTTTGAAACTTGCCTCGACTGTCCTGAGGATATACAACTT
CAGAACATAGACAGAAATGTGTTTTCTGAATATATATAACGATACTTTTT
GATAAAGTATAAAGCATACCTCTTCCTTTGACATTAACAACAAACTCTTC
ATTGGTGCCATCAGTTtgcaatgttttcattttaataaAATGAACAAATC
CCGACGCCATCTCCTTACGAATCTGCACTAACTGGATATCGTTCAATGGT
CTGGTCAAGTATTCGTTTTGTTGTAATCCTTCATACACGATTTCTGTTTT
TTCGTCGATTTCTTTACCGACATCAATAGCAGTGATATTAGCAATgttca
agtttttgaaattcaaagtgATTTGAACGTCTTTGTAAAGGTTTCTTTCA
ANGAATTCTTTACCGACATCAATAGCAGTGATATTAGCAATgttcaagtt
tttgaaattcaaagtgATTTGAACGTCTTTGTAAAGGTTTCTTTCAAGCc
tgca
Run BLAST on NCBI

protein sequence of TCONS_00046496-protein

>TCONS_00046496-protein ID=TCONS_00046496-protein|Name=TCONS_00046496-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
CRLERNLYKDVQITLNFKNLNIANITAIDVGKEFXERNLYKDVQITLNFK
NLNIANITAIDVGKEIDEKTEIVYEGLQQNEYLTRPLNDIQLVQIRKEMA
SGFVHFIKMKTLQTDGTNEEFVVNVKGRGMLYTLSKSIVIYIQKTHFCLC
SEVVYPQDSRGKFQR
Run BLAST on NCBI

transcript from alignment at scaffold_112:79186..79739

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046496 ID=TCONS_00046496|Name=TCONS_00046496|organism=Clytia hemisphaerica|type=transcript|length=554bp|location=Sequence derived from alignment at scaffold_112:79186..79739 (Clytia hemisphaerica)
tgcagGCTTGAAAGAAACCTTTACAAAGACGTTCAAATcactttgaattt
caaaaacttgaacATTGCTAATATCACTGCTATTGATGTCGGTAAAGAAT
TCNTTGAAAGAAACCTTTACAAAGACGTTCAAATcactttgaatttcaaa
aacttgaacATTGCTAATATCACTGCTATTGATGTCGGTAAAGAAATCGA
CGAAAAAACAGAAATCGTGTATGAAGGATTACAACAAAACGAATACTTGA
CCAGACCATTGAACGATATCCAGTTAGTGCAGATTCGTAAGGAGATGGCG
TCGGGATTTGTTCATTttattaaaatgaaaacattgcaAACTGATGGCAC
CAATGAAGAGTTTGTTGTTAATGTCAAAGGAAGAGGTATGCTTTATACTT
TATCAAAAAGTATCGTTATATATATTCAGAAAACACATTTCTGTCTATGT
TCTGAAGTTGTATATCCTCAGGACAGTCGAGGCAAGTTTCAAAGATAATT
TGGGTGACGCCCAACTTTTCTGATTTGCATGTCCAAAAAGGACATAAGCT
TGAC

Coding sequence (CDS) from alignment at scaffold_112:79186..79739

>TCONS_00046496 ID=TCONS_00046496|Name=TCONS_00046496|organism=Clytia hemisphaerica|type=CDS|length=498bp|location=Sequence derived from alignment at scaffold_112:79186..79739 (Clytia hemisphaerica)
tgcagGCTTGAAAGAAACCTTTACAAAGACGTTCAAATcactttgaattt
caaaaacttgaacATTGCTAATATCACTGCTATTGATGTCGGTAAAGAAT
TCNTTGAAAGAAACCTTTACAAAGACGTTCAAATcactttgaatttcaaa
aacttgaacATTGCTAATATCACTGCTATTGATGTCGGTAAAGAAATCGA
CGAAAAAACAGAAATCGTGTATGAAGGATTACAACAAAACGAATACTTGA
CCAGACCATTGAACGATATCCAGTTAGTGCAGATTCGTAAGGAGATGGCG
TCGGGATTTGTTCATTttattaaaatgaaaacattgcaAACTGATGGCAC
CAATGAAGAGTTTGTTGTTAATGTCAAAGGAAGAGGTATGCTTTATACTT
TATCAAAAAGTATCGTTATATATATTCAGAAAACACATTTCTGTCTATGT
TCTGAAGTTGTATATCCTCAGGACAGTCGAGGCAAGTTTCAAAGATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029680XLOC_029680Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046496-exon-scaffold_112-1491911889:79186..79739TCONS_00046496-exon-scaffold_112-1491911889:79186..79739Clytia hemisphaericaexon
TCONS_00046496-exon-scaffold_112-1510915933:79186..79739TCONS_00046496-exon-scaffold_112-1510915933:79186..79739Clytia hemisphaericaexon
TCONS_00046496-exon-scaffold_112-1575043694:79186..79739TCONS_00046496-exon-scaffold_112-1575043694:79186..79739Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046496-proteinTCONS_00046496-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_112supercontigscaffold_112:79186..79739 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.113912	0	0	0.141187	0.130158	0	0.561506	0.537838	0.0696089	2.50037	1.75948	0.850548	1.08615	0.411002	0.885563	0.981712	0.790121	1.30765	1.82462	1.22855	1.11121	0	0.396455	6.8284	7.47488	3.9587	4.16203
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046496 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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