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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046504 ID=TCONS_00046504|Name=TCONS_00046504|organism=Clytia hemisphaerica|type=transcript|length=361bp
TTTAGAATAACTGGAATAAATTGAGAATTACAAATTGAAACATGGCAGAT
GTTGAATCAAAAACGTTTGTACATGCCTTCCAAAGCCTCGACCATGACTC
GACtgGCTACATACGTATGGACGATTTGAAAGAGATCTTTTTGTCCAACT
TGAAAGACGCCTTTGAGCCTGCGGTGATTGAAGTACTTTTTAAGGAACTG
GATCCGAAGGAATCTGGTCAAGTGGACATACATACTTTCAAACAAGTGTT
TGGTTTTTAAAATCCAACTTGGCTTCATTTGTCCATGCTTACATGCGCTG
ATGAACATAACACAGTTTGTCGAATTGAGAATCTAAAAAATGTATCGTTA
GTTTTTATAAT Run BLAST on NCBI transcript from alignment at scaffold_113:129849..131715+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046504 ID=TCONS_00046504|Name=TCONS_00046504|organism=Clytia hemisphaerica|type=transcript|length=1867bp|location=Sequence derived from alignment at scaffold_113:129849..131715+ (Clytia hemisphaerica)
TTTAGAATAACTGGAATAAATTGAGAATTACAAATTGAAACATGGCAGAT
GTTGAATCAAAAACGTTTGTACATGCCTTCCAAAGCCTCGACCATGACTC
GACtggtatggaaatttaattctTTCAGCTTTTTATATATCAGTATCCAA
GTGATGATCAAAACTAACTTGCTATCACTTTGGTGTATGCAAGAATTTAT
GACTCAGCGTGATTCTCATGTTGATTTAAATATTCTCagagtgttcttat
tttctcatcatttttatGGGGctttattttctgatttcgctAACTCTTGC
tatagaccagcgtccgagattcagaaaagaccataaaaatggttttcgta
gggcaccccttagatcaaggcaaatttttgatattatgctcataataggg
tgtagaattgacaaaaaaaattgcccttcgaatctcctgcagttttcgag
tgaatcgatatttagttaatcgatagaacttatcaaggataaaataaaga
aaatattaaaaaatggggttatttgttaagttcgACCACCTAATGcagag
aaatggcatttttatggcgaaaaatcgacgtttttggcgttttccgatga
cgtcaacATTTTCCTAGAGGGATTTTCAGAAGAAATAATTTCCActgctg
gatagccctgaattagtggTATcggaaaatggtatggtttgttaactttc
gatgttcCGATCTTGAGATATCGTTTTTAAGgtgggtaaatatgctgaaa
aactgctgactcagcaatgctgacaaaccataccatttttggatactatt
aattcagggctatccagtcgttttttctgaaaatcccTCTAGGAAAATAC
TGACGTcgtcggaaaacgccaaaaacgtcgatttttcgcctttaaaatgc
catttctcggcaccaggtggtcgaaacttaacaaaaaaacccattttctt
tatctacttttcatgcTGAATCCGTTGACAGCCTCAGATATTTCTTTTCA
GACTTCggaaaaaccgttagtaaagttAACTAAAAATcaattcactcgaa
aactgcaggagattcgaagagcaattttttttttgtcaatgcTACACCCT
TAGgggcataatatcaaaaatttgccctgatctaaggggtgccttacgaa
gtgacacaattcactacctcggccgctggtctactAATTAGAATGCAAAC
GGGAGGCCTGATCTGTTTGAATTGTAGAGAGTATTTAACAGTTTCCGGTT
GACAAGAACTGAGAATTATAGAACGATTCgaataaaagaagaattaaCGA
GAGTTCGTTCGTTCTAACTCCGCTCCTAACTAACCGATTGTACTTTGTTC
TAAAATATGACAATTTACCTTTTTCCAGGCTACATACGTATGGACGATTT
GAAAGAGATCTTTTTGTCCAACTTGAAAGACGCCTTTGAGCCTGCGGTGA
TTGAAGTACTTTTTAAGGAACTGGATCCGAAGGAATCTGGTCAAGTGGAC
ATACATAGTAAGTTTATGAACAATATTTTACCTCCGTTTTTCTTGATCAA
ATCACACgccaaaggaaatttttttaaataaatcatttGTTTCAAATCAT
ATATGAAAATTATGACTGTATATGTTCATCTCTTATTTTGGACACAAATC
TACATTGACGttcgtttttgaaaatatattagaACATAGCAATTCTCCTG
GATGTTGTAACACATGTTTTCTTTATTGTCACATTTTCAGCTTTCAAACA
AGTGTTTGGTTTTTAAAATCCAACTTGGCTTCATTTGTCCATGCTTACAT
GCGCTGATGAACATAACACAGTTTGTCGAATTGAGAATCTAAAAAATGTA
TCGTTAGTTTTTATAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046504-exon-scaffold_113-1491911889:129849..129953 | TCONS_00046504-exon-scaffold_113-1491911889:129849..129953 | Clytia hemisphaerica | exon |
| TCONS_00046504-exon-scaffold_113-1510915933:129849..129953 | TCONS_00046504-exon-scaffold_113-1510915933:129849..129953 | Clytia hemisphaerica | exon |
| TCONS_00046504-exon-scaffold_113-1575043694:129849..129953 | TCONS_00046504-exon-scaffold_113-1575043694:129849..129953 | Clytia hemisphaerica | exon |
| TCONS_00046504-exon-scaffold_113-1491911889:131227..131355 | TCONS_00046504-exon-scaffold_113-1491911889:131227..131355 | Clytia hemisphaerica | exon |
| TCONS_00046504-exon-scaffold_113-1510915933:131227..131355 | TCONS_00046504-exon-scaffold_113-1510915933:131227..131355 | Clytia hemisphaerica | exon |
| TCONS_00046504-exon-scaffold_113-1575043694:131227..131355 | TCONS_00046504-exon-scaffold_113-1575043694:131227..131355 | Clytia hemisphaerica | exon |
| TCONS_00046504-exon-scaffold_113-1491911889:131589..131715 | TCONS_00046504-exon-scaffold_113-1491911889:131589..131715 | Clytia hemisphaerica | exon |
| TCONS_00046504-exon-scaffold_113-1510915933:131589..131715 | TCONS_00046504-exon-scaffold_113-1510915933:131589..131715 | Clytia hemisphaerica | exon |
| TCONS_00046504-exon-scaffold_113-1575043694:131589..131715 | TCONS_00046504-exon-scaffold_113-1575043694:131589..131715 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_113 | supercontig | scaffold_113:129849..131715 + |
Blast
The following BLAST results are available for this feature:
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