TCONS_00046509 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046509
Unique NameTCONS_00046509
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length669

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046509 ID=TCONS_00046509|Name=TCONS_00046509|organism=Clytia hemisphaerica|type=transcript|length=669bp
CTGACCTAAATCCGTGTTGattaACACTGAGGATTGATGAAAAATGGACG
AGATAATGATGGAGGAAGAGttACCTCTACCCGAAGAAGATGACAATTTG
GTGGACTTGAAATATATTCATTGGGGATATTTGAATTGTTGTCAAACATT
GTATAAAGGTCGCAAAGCAAAGCACGAAGTATGGAATACTTATTGGGTCA
CTCTTTGTGGAACTACGCTAAGATTCTACTTGgatGCAGCGATGCACCCA
GATTCAGTCTTTCATGCACCACCATCCTCTCCCTTTGGACCTTTACAAGA
AAATCAACACAAGGTTGCATTCTTTGAGTTGGATGGAGCTGAACTCGACA
TGCTGGACGATGGAAAGGTTTTCAGAAGACGCTTGCGGAAATCTGTGTAC
TCGAAAATTTACCGACAACATTTATTTCAAGTGAAACTAAATAAAATCCA
TTCTACGTACGCTTTCCAAACCTCGTCCCAGTCTTCCTTATTCACGTGgA
TTTCAAAACTTCAAGAAAGCATTGATGCAATTGAAAATAACGAGGTATGT
ATGATATTATGATCTCTACTAACTTGACTGGATCAGGCTTGTTATGACCG
TTTTGAGAAcggaattttttgtttatagttTTAAGACCGGTCtccatttc
gcgcgaaatgggcgaaaac
Run BLAST on NCBI

protein sequence of TCONS_00046509-protein

>TCONS_00046509-protein ID=TCONS_00046509-protein|Name=TCONS_00046509-protein|organism=Clytia hemisphaerica|type=polypeptide|length=172bp
MDEIMMEEELPLPEEDDNLVDLKYIHWGYLNCCQTLYKGRKAKHEVWNTY
WVTLCGTTLRFYLDAAMHPDSVFHAPPSSPFGPLQENQHKVAFFELDGAE
LDMLDDGKVFRRRLRKSVYSKIYRQHLFQVKLNKIHSTYAFQTSSQSSLF
TWISKLQESIDAIENNEVCMIL
Run BLAST on NCBI

transcript from alignment at scaffold_113:330438..343715+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046509 ID=TCONS_00046509|Name=TCONS_00046509|organism=Clytia hemisphaerica|type=transcript|length=13278bp|location=Sequence derived from alignment at scaffold_113:330438..343715+ (Clytia hemisphaerica)
CTGACCTAAATCCGTGTTGGTTAGTATTATATAGGTTGTTTCTTTCCAGG
TGGTCTTGCTTGTTTTTTCTtacgattttttcaaaaactttgattaCATG
TGATGTAAGAGCAACATGGCGGTAGTTTTCTGGTAATCCTTGATTTCCCT
TTTTAAATATTGGGGTGATGTAACTTGTTTTAAGTATCTTTGGGGTGAAT
CCTTTATCGAGAATATTCTGCCACATCAGCTTGAGTTTTGCAAGCTGTGA
CTTGCTTTTAAGGagaaacatagctggaaagtCATCTGGACCAGCAGCTG
AGTTAGGAGAGaggttttgtattttttaataaaatcttccTCTCTGAAGT
CAACATAATCAAGTTTCTCAGTCACTTGTGAAGGGTTGAGACTGGCGTTA
TTATAAATTTGAGGTTACACGTCCAGCAGCCATCAAGAAATGTCTAAATT
CCTGCCATCTTGAAATTTATGATCTcacatgttttttattttctaaccaC
ACTGTTTCATTTACCCGCGATTCTGTCGGCGAGTAACTCGGCAAAATTAC
TCGCAAATTtgagattctaaaatggtagagtagagctgcaagcggagctg
cgtagttaatttgttttgaaattttactacTTTGATTGGCCAgtcatctt
tttttaaatcttttctaAATTTCAACCTATAAGATTGTTGTGTATGATGA
AGGTTAAACGTCTGGCCCTAACGCCTTGGATAACGAGTAGTCATAtaact
ttatttgtttcaatcgttAACTCTAAGGGTggagttttttcttttcttta
gttCTCAAACGAAAGCGGTAATTTGATGGGAgtgttatttttcaaagaat
cctttctgattggatgaaagcaCTTTACCTTCATTTGATTGGATACTTTT
TGTGATCTTAATATTGTGattggacaaaataaaacaattgatGTCGCCGT
GATAGGATGATAAAATATTTGGCGCTTTCATGAGCATTTGcgattgaata
aaataaaacaatctaaATGTTTTCCAGGGgtgaatttttagattttcttc
tttttcttcatgttTGCCAATCTGGGGAGTCTTCGTATATGCCACAGAAA
AAATCATGAAACCCGCCAACTTAATTTTGAGGCAAATTCCCAAGATTGGC
GAACAATAACTTTTTCCCATGGcttttctctttgatcttttattggtttc
ttttATTGATTTGTTGCACCAATGACTTGCGCGTCATTTCTTGAAGTGGA
AACACACCACGGTATTTCCCAAGCTGtcaatttgatcaattaggtAAAAA
ACAGTTCGTATATGAAACATTTCTAGAGTCCCCTGGCCAGTTGGCAACCA
ACATTTTTCGTTGGcttttttaaaagagaaaatcagtgcCCCACTTGCAG
GCTAGGTCATATGGATTGTTCAGAATGATAAAGAAACTTATAAGCATTCt
tgtattaaatttcttttcactcgttcttttgttttgaaatagcCTATTTT
CATTTCCCTTCAGCatgtttttccagattttttcttcaagtcaccatttt
tttctaaagtttgttttcattttgttttggaaGTGCAGTCTATGGAGAgt
tttcatttgataaaaaaagaggaatttgaatgttttgatcgcaatgtaaa
gtcttctttttttcctgCATCTCAAATGTTTTGATAGTAATGaagagtct
tctttttcttattttcaattttgattgtCGCACTCTGGATGTCTATTCTA
AACTGATAGcataaaattttttatcaatatttcagacaAAGGAAACTGCA
TCGTGCTGatttttaattatggaaatacTAACAAACTCATCGTTTTGAAC
aagtatatatttttatgaatagcagttgaagtgttttttcctacaaagct
tttttgtccacatgTAGCTGTTTtgcatgtttttcaaaaaaatgtttttt
tcgagTGCTTCCATGCAAACTTGGATCTTTGGGATTCTACTATTTTGCAT
AGTATATACTCAGGTGTGTTAAGGACCACCAACCGTCTTTGTGACATGTT
TTTCGACATATTTTACAACATAAATATCAGTTTTTAGCCAATAATTAGAT
AGAGGGTTaatataaatttttgacccagcacttttccaGATCCTCTCGTT
AGTACGCTTCTTTAAAGCTATACATGACTTGCTAAAAATGGTAGGAAGCG
GTCAgtgtcacgcaaaatatgttttggATTTGCCTTAACTCACCGGAGGA
CAGCAAAAAGGTCAAGGAATATAACTactaaaagaaattctccagaggta
CGACTGGGATATGGGATAGGATATGGGACCGTCTTGCCTGGACAATTGCC
AGTCCTTCCAGCATTTCCAGGCAGTTGAGCGGGCTGGTTTTATCTCTACT
AGAGAAGAATCCAGCATAATATCTAAGAGattaacaaaacaaaactgGTT
GACACAGCGCCCGCTTAGATTTTTTGTTAAGCCTGTTTTcccaataaaat
tcaaattagttttctaaaaatttggtctgtaatttttctttgtttttcac
tgAATAAAGGTGGGTCACACTCAACTCATTTGAAGAGGCTTGGTGCCTTG
TTACTCACCCACCAAGTCTACTCTTTTgacattcaaaacatttttgagtG
CTTAGTGTCTGGTAATAAACGCATGCACGTAAATGATAAAGGATTTTCGT
ACACATTTTGATGTAGCactagtgtggctaactgatTAACAACTGATTAC
AAAAAACAAGTTAATCTAACGtggacatccctcatctaattccgacaccc
ttttttagagataGAGGAATAACAGGAAGGTCCAAATCaacaacctgaaa
aaagtttttttttctgatcgcttaagaaagaaataatataaaaaataata
tatataattTCATAATCAACAATTTTGACCTTCTTTTAATCCTCTAGCTC
TTTAAAAATAAGGttgtcggaattagatgagggatatCCACATCTACAAT
ACTATACTTACAATAAGTAAGCCTGAGCTCTAAATATAAAGGCATTATGG
AAGCCAAATGATTGCAGAATTTCGAAATTATACGACTTTTAACCCTATCT
CgtagttttttttaaatctttagtTTGGTGACCTAACTAGGCATTTTTAA
AGCGCCAAAGCAAGGCAAAAATTTCAGAGTAGGccagaaacttcaaaaat
tgtctgaGTGGACTGATTGATTCAGATTTActgttgattttttttagatt
aACACTGAGGATTGATGAAAAATGGACGAGATAATGATGGAGGAAGAGGT
ATAAATTgcattttaaaatcttaaaaatctagcaaaaaaatcagaatagT
TAATGGCTCTTTTGTCAGTCGACCAGTTTTCAACAGTTTATCAATAACTT
GTTAGTAGATGTAGATAGCTAAAATTTTATAAAGCAAATGATggcagttt
tattttttattttttgatcaaCGGTTTATGCTGATAAGTTGTACTATTTA
CTTAGCTGGCTCAAAGTTTATTAATAACAAAAATCTGAGTAGGTATTGCT
CATTATCCAAAAATAGACACTTTCAAGACTACaacaggccatattttaga
aaggcagggcagtgTCCGTTGGTATACAAAAACTgctctttttctattgt
ttttccactaaaaacgctgtttttaccaaaattttagtgattttaggAGG
GGAGCGTCCAATAACCTGGCGCTAAGAGGGTTTAAAAAATGGCCTGACAA
AcctatttttgaaactttccatTGGTAGATACTCTGTATACATGTAAATT
GTTTCTCATCTGTAAAAATAGTGCTTGTTATCAACCAAACTTTATGATTG
TTTGTGATAATCATGTATCTAGAAACTTTAGGAAGTTTGTTTTATcagaa
attttttataagaacataaggcctcAACCCAGGTTTTAAGAGCAGTCTTA
AAATATTTGAGGCTTAGCAGACTTCAAGCACTCTtaaaacggtgaaaata
agattaattcaagaaatttttaggcttaagacttcaaaggcttcaaaaaa
taatatgttcttataaaaaacacgaaGTCTTACAAAAGTTCACAGCTATG
ATCAATCGTAAAATTATAAAGTCAATGATTAGTTTGTCAGACTAGTTATA
GTTAGATTATAGATTGACATGAGATGTAATTTAATGTCATATCCTTTATT
AACAGACTCACCTATGCTGATGATTATTAGTAAGAGttagaaattgtttt
gttttgaaattgtgcAAAATTGATTAGTCAATTTGTATACTTCAAACTCA
TCCTAGTGCTATGAgaatcatcaaaagaattttagAATGGGTgtcaaata
tcatttttgtgttactttgtttacattttgagtGATCTTAAAATACACAT
ATATCATATCATTTTGATTAACTTCTACTCTATAATAACACTTTTGAATG
TCAATTTTAATAGTGCAATAACATATAGTTGTATTTTGAATACTAGTTTA
CCAGTAGACACTTGGACTTCAactatttcaagaaaaatgaagaagatatt
TTCCATTTCTATGGATAAGAGAGAAGTGATTGAGAAGACAGCAACATTGG
GTAGAAAGTTTTACAAGAGAGTGGGTTTACAATCATTGATATTATTCTGT
CCTTAAGATTATGAACattcttttagatacaaacgtTTATCTAGTTGTAG
ATCTTTATATGGGAATAGATCTTTATGGGAATAAAGATCTGGTCAATAAA
ATCATCGAAAGTTTGTTGTAGGATGGTAtatgaaatatgtttttgagatC
TTAGAATTGCACATACTTTTTATTagatttcctttgttttggatgAACCG
GGATGGcaaatttttgacagttttgCGCCTAAAACGTTCTTATCAGCGTT
CTTGAGTTATACAAATTGGCCTTCAAGTTGAACAAATAATCAAATTAAAC
TCTAATTTAAAGTTGGGAAGTAAAAGAATTATTGCAATTACGGAATTTTC
TTATGAACTCAGATAACTTGGagcaaattttggaaatttcatcaattttc
agACTGGTCATgttcttaggatgttcttattcttttccaaaatataactt
aaatgttcttataaactataGGTTCCAATAAAAACATTTATGTAACGTCC
CTTTTGAGTTAAAAGTTGagtgaacatttttaaaattgcATCTccacttc
ttcatttttatttttcatatttttcagttACCTCTACCCGAAGAAGATGA
CAATTTGGTGGACTTGAAATATATTCATGTTTGTTGCTTGTcttttactt
tgaaaatttttaaatcttgtacagaaaaatcaggtttttgaGATGAGCAC
AAGTCTTTTTATgagattgaatttaaaaaacatgtGAAAGAGGCAGACTT
TTTGTTGGGAGCGTAGTCATAAAACATTGGTCTTATGCTTTCAAAAGCAG
ACTAAAGCACATagcatagtttctagaggggtcaagaccccNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNccccccccccccccttaagtg
ctaaccccccttaggaaatagacgatatcggctttctgaattctccccga
atgattacccatgatgcattgttaAGGTTTGggttatcgtccgtgaattt
ttttgcgcaatgcatcatgggtaatcattcggggagaattcggtaaagtc
gatatcgtctattcatttaaaatttcacaccccccttgcttagaaaatca
gtataaatgaaacgATTGTACAAGAGTCATAATTAGGTTAGATGATTTTT
GTTCAAGGAAGATCCCTCTtatctaagaagaccccccttaggtaagaaga
ctctccttaactggcaaccccctcttaggaaagtcatacttttaacaccc
cccttgcttttggttcatcaaaacccaagatcccccctaaatgtaggggg
gggggtagaaactatgcATAGGCTTGAATATTGACTTATAAATAACACAA
GTTTTTCATTGGGGTTTGCTTTGTTTATTAGGATGTCTTACTTTGCTATG
ATATGATGATACCATTAGATTCTTTCCATTCTTTTGTTTGAGATCCCTTG
ACAGTCTCCTTTTTCTAAGTTTCTCTGGTTTATAGTTTCTGAAGAATGTT
GTATCTTTCTTTCAGTGGGGATATTTGAATTGTTGTCAAACATTGTATAA
AGGTCGCAAAGCAAAGGtaactattttgaaaaaaaagtctttgttctttt
atttattcactttccttttaaaaatgacaaaacctCTTTGGATTTGTAAT
GAAGATGGTTGAAGAGAATTTATAATGTAGCTGACTGTATGATAAATATT
TGCATTTCTGTCATGCGAGCTAGAGTATTGGTATTTATTGTGACATCTTG
AGTAGGATATCATTCAAATGTAATATGATACACTAATCTTGTGGTTTTTA
TGTATATTTGGATGTTGGTTATAAATAATGATGcaaattcaaagcaaaaa
attttctcgagaATCAATTCTTTTGCATTagaaagaggaaggataaactt
aatTTGTGAGGTTTTTTCAGTCAAACTTGGTCATCTAGATATAAAAAGTT
ATGGTCTAAATGCAAATAAATCAAATTAGTCTaaaaacattacttttcaa
aaaagtctaaaaaggCGAAAAATGAGGGTATCAAATTGATTATAAGACAA
AGACACAAATGttggtaaaattttgaaatttttagggcTCGAAAAAGCAT
CATATCCCTTGActtttgaaaagtaatattttagcatttagttTAGACCA
TAACATTTTGATCTAGATGACCAATTTGACAAATGACCccttaaaattta
agtttatcctttctctttccaatgcaaaagaattggttctttaaaacttt
ataGAGCTCGAGAAATTTTACTTCAAAGAGAGGGATTTACACCCGGTACC
AACTTGATTCATAGTATCATCCTTACTGTTCTATAGCTCTGATTTTATCC
AGAATCAATCCAGagaaaaataccaaataatCTCTATCTTTAAGCTTGAT
AGAATtggattattattattaattaaagtacagttgacgcgctctaattc
gactttctactgttcgatacgctccattattcgataatgtTTAAATTCGC
CTTGAAAGAGAAAATCTCATGAACGACGTTCAACCATTCGATACGCTTCC
TCATTCAATGAAagtctactttaatgggataaactttcgcggggattaaa
tttcacgaatttcgcagatttgggtgtcatccgcgaaaatccgcgaaatt
aaatcccaatggaaatttggaagggccccatccacgaaatatttctaatt
aaaactcaaaatatgtcaaataaatactttttgaattgtACTTGCATCAA
Aaaagcgcaaataatgtgtatttcaacaaccaatatgcatgatttgacag
tataaagatacaaaatcgtgaaaatattgccatcAAATAGtgccaaccgc
gaaattaagtccccgcgaaatttaatccccgcgaaattttatcccattaa
aatcCAATTCCCATTGAATAAATTGGAATTgtgagcgtcaactgtagtaa
aaaaatcaatccagcaaatttcatcattttttcgtTCCAGCACGAAGTAT
GGAATACTTATTGGGTCACTCTTTGTGGAACTACGCTAAGATTCTACTTG
GTAAGATCATGGTACTGATTGTAATGTTAtccactttttagcctgctgtT
TTTATTGGGTTTAAGGGGCTGTTAACATGGAGGCGGGTTGCCTTGGCTAG
GTGAGGTGGGATGGATTTTCGAACGTTACGTCACAGTTTTTGACGAATTA
AATGGCTAGAAATGGATCACGTGACGTTCGAAAATCCATCCCATCTCGAC
TAACTGGGCCAGTCCGCCTCGAAATGAACAACCCCTAAGTGTTAAACGAG
TTTAGTGGGCTTTAAAGAaccttttgtaaattttgtacttaaaaaaaatc
tcaagaTAAGGAGCCTTTGTTGAAATATGCCAATATTCTATTTCGTATAA
AGTGATAAAGGGTTATTGAGTTTCTAGAGACTCTCTTGAACCTAACCAAG
ATTTCTGTAATTTTGATCACTTAGACTCTTAGGAGCTTTCATTTGAAGTA
CCATCGTTTGGGGTCACTCATATAAGTTTGGGGTAACTTTTATACCCTTA
CAAGTAAAGAAGTCAGAACATGATTTGTTTACATCCTATTCTAACGTAAT
AtaatttatatttattatttatatttAGGCTATGAAAGTTACTCCTTGCT
TACAAAAATAACTGTAATTGActcctttattttcttttttaggatGCAGC
GATGCACCCAGATTCAGTCTTTCATGCACCACCATCCTCTCCCTTTGGAC
CTTTACAAGAAGTAGGTTTTTAATGATGTTTCGTTATAATTACAACTTAT
TTGGAAGGAGCCTTCTGGTTATTTGGTGTTAAACAAGGAAAACAGATTCC
ACAATCAGGTTGAAAAGATACATACTGCATTAATACTTGTGCGAAATACA
ATGATGTTTAGTTATAATTACAACTTAAAAATAAACTGCTCTCAAATAAG
GAAAGTATTGGTTAACTATTGATACCCTAAATAATGTGTAAAATGTAGCT
ACTTTGACCATCTCATATGGTTATGCATTGGACTCTTCCAGAAAacgtcc
gtacatgggggtggaggatgtattgtccggggggtagcgaaaaatcatca
aaatttgccttgtccgggggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTtttattccccc
cccccccccccccatattcaaatttgttctggaaaagcccatttcatGTT
TCTGATTGACCCAATATTAAAAATGTCACACTATGTAACTTcgaattttc
aaacattttccgaGTTGAAACGCGCGTACAAAACCAAACTAAGAATAAAA
TTGCgacttaaaaaaatcaaaaaaatcaggGTGGCGCTCCTAGGTCCAGA
CCCACTAGTAAAGACTGGACCAAAAAAATCGAGTCATTTCATATAATGCC
AATGACGCTTAGTATATGTagtcacatgataacgagtgcaattcNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaattacagaaattacact
gacagttttatatttttctcttctctttatgtctttcttttattgttgct
tattgattttctttctcacaaaatgaatttcgaatggaattaaaaaattc
gatgcaaaaaaaatgtaagaaaaaacattaaaattgattttgTAAACATT
GGCGCTGCATTGAagagtgtgattaacgattaattgctctctacaggatg
caattaacgattaattgctctctttgagggcgtgccaaataagaaaaaat
aacccatcgtgcgattaatgGTTTAATCTGATTTTTCGTTTTTAGAATCA
ACACAAGGTTGCATTCTTTGAGTTGGATGGAGCTGAACTCGACATGCTGG
ACGATGGAAAGGTAAAAGGATTTTTGTTGGTTATAGTTTAGCTCTAACAT
AGCCCATTGCATATATAATTGAACAGATTGGTcaataatattttgaatta
GAGTGAGCAGAAAGTTGGTTGTCCAAAGTCAACGCAGTGctctcttttga
cgtcaatgaaATGACAAACTTTCCGCCCACTTCTTGTCTACTCTAACAAT
TTGAATAGTCAGGACAGAAAGTcgaccgtctaaactagagcttataTTAT
TGagataataagcagatattcaacgggtaaaagttggttattgagattta
ttaacccgaggtgatgtaaaCGAAACATATATGTCAACTGTTAAACGTTT
CACATAAAACACGCCCatataatcgaacgttcgaatgtttttatttttta
atatatttcttaattactttgagtcataaCATGTGTccatgaaattgaca
atagatttattttgatgaatttctttgatataacaacaaaaacgacaaaa
aaaatcaaactttgaaatcaaaattctaccgtggtataatagccatggta
tatcaggaattattcaatggctgtttttgcctacaggtatatagtAATAA
ATGTTAAGTGCTTGGATGCGCATTAGAAATGTATTTTTCTAGGAAGCTGA
AAATCTAATAAAGCATACTGTTATGATATATCTAATTAAAACGACAGTAT
CATTGTACATCTTCCCATGAGAAACTTTGAAACCAAATGATAAGTGAATT
AAAACACAACTAGTATAGAAACATTGGTAATATAGAAACATTGGTAATAT
AGAAACATTGGTAATATAGTCTTACCACAAAAATGATAACATGACAACAC
GAAAAGAAATGAAACTTTTGATGAGAACAAAATGTAAACTGGTGTATGTG
TGTCATTGAAAGTCAACTTTTGATTTGTCCTGGACTGAATTTCCCAGTCG
AATTGTTATCAGTTTTCAAGGGTAAAAAGTCTATTCGTTTTCTGAGGTGG
AGTTGAAGGTGACTGAGGAGAACAGGATACTTCATTGACCCTTTTCATTG
GCCCTTTTCGTTGGCATTATCTTTCAACCTGTGGCGGAATTCGTAGTCAC
TTTGAAGGTTTTAACCTAAAAGTGATGTTTTTTGACCTCTTTTATACTGT
GTATAAGATGATTGGATTGGACTGGGATTagtagtttaggtataaactta
tttcttttttatgatttttgttcgcaatcataaaaaagaaataagtttat
acctaaactatgTGATTAGGAGAAGAAAGTTATAACTTCTTAATTTACCA
ACCGAAGTATGACATTTCTAATCCTTTGTCAAGTCAATTATTATGTAGTG
GTCTTTGCAGGTTTCGCTACTTTTTACCCTCCTTACAAGCAACATTGAAC
AGTGGCGGATTAAGGGCCAGTTTAAAAGGGGACGCGGCGTCTAACCAGTC
TTTAAAGAGCCGATAAGGTATCATTTTATCCGAATTCTTGATTTCGAGTT
TACGATTTGCTATGGCTATTGATGTTTTGGATTGTGTAGTCTTGAAGTCG
TCTTTAGTGTAATGCTTAGTCAGACTTTCTTCAGCATTCcaacttataaa
aaaactcattttatattattttgaacTTTCTTTCTCAAGGTTTTCAGAAG
ACGCTTGCGGAAATCTGTGTACTCGAAAATTTACCGACAACATTTATTTC
AAGTGAAACTAAATAAAATCCATTCTACGTACGCTTTCCAAACCTCGTCC
CAGTCTTCCTTATTCACGTGGTAAGTATATTGTTTGTGAGCCTTTTCTGC
AAAGAATGTCTTAACTTTTCACGGTTGAAATTAATCATCATTGGTATTTG
GGTCCGACGCGCTCTGATAACGTCTTCCTATTTGTCTATAATCTTGCAGT
CTATGCTTCTAGCAAATGGAAAGCCGTTATAAGAGTGAATATCAATCTTG
AACATTCATGATTCGTTTCTACCTCAAAGTGGTCCATTACCACGATGCAC
ACCTACAAACTAAAGAAGAATAGATACCGAGTTTCAGTTACAAAGAGCAG
ATATAACTAAGTCGACCTCGTTTAACTCTAAATACCCTTCCCTCTCTCAA
CATTTATATGTATcatatttttgaatttgtatttgAATATCTGgatcaca
gatttctgtaaagcccgtcctagatgtcgtgctttaagctcttccaagca
aaaaaaagtgaatatcgcaaaaaatattgctgctattgttttcgaaaacc
tgcgaagcttcttattggtcaagtgctgaaattctattgtaacgtcatgt
gacctaggtaggatttcctacctaacctcggcacacttttaagccaaagc
acgacatctagcccttcgggctttataaatctacgATTTGGAGTCCCAAA
ATTAAAGAAACTAGGTTTTATTATGAAATCAATCAAAACATCACAAGCAC
TACCAGGCTCACGTGTATTTTAGCATGACATAACTTCTACTTTCTTTTGA
AACTTTATCTCCACGGCTTTTTTACTCTGATAATATAGTTTCCTTCTTAT
CTGTCTTTAAACTGTTGATAATCTGCCAGCTTTAAGAGATTTTTTAATGC
CAGGTAGCCAGGTCAAATTGttatttctaaagttttatGAATTTATCTCC
TAACTGTAGAACGGTGAAAGTATCTTCTTATTATTTGGAATTTCACTCAA
TTTATCACGCcttaattttttggcattttattGCGAGAGGTTTTTTGCGT
GGATAGCCAATCTAGGACTTTCAGGCAGTTATtcgattattttttttcac
GGACTACTACGGATCGGCTATCTATTAACTATGAATCCGTTCATACATTG
AACTGTGAACCCCTGTGTGACGCTGACGCTTTTGACTACCTCGCCATCGT
TCCATAAGGCTCAATTTTGCATTATTCGCTTGTACAAGCTATATAAGAAT
GTTACTGTGTGCCAATTTCAAGGTTTTGTATCTCaaatttcttatcttaa
aaatgatttgaacCATGTTTGTTTTACTATATTATTTGCTGATTAAAGAT
TCTTCTACAGTGAAAGAGAGAGATTTTTCCTCatattttatttgtttgaa
tttttaggATTTCAAAACTTCAAGAAAGCATTGATGCAATTGAAAATAAC
GAGGTATGTATGATATTATGATCTCTACTAACTTGACTGGATCAGGCTTG
TTATGACCGTTTTGAGAAcggaattttttgtttatagttTTAAGACCGGT
Ctccatttcgcgcgaaatgggcgaaaac

Coding sequence (CDS) from alignment at scaffold_113:330438..343715+

>TCONS_00046509 ID=TCONS_00046509|Name=TCONS_00046509|organism=Clytia hemisphaerica|type=CDS|length=4152bp|location=Sequence derived from alignment at scaffold_113:330438..343715+ (Clytia hemisphaerica)
ATGGACGAGATAATGATGGAGGAAGAGttACCTCTACCCGAAGAAGATGA
CAATTTGGTGGACTTGAAATATATTCATTGGGGATATTTGAATTGTTGTC
AAACATTGTATAAAGGTCGCAAAGCAAAGCACGAAGTATGGAATACTTAT
TGGGTCACTCTTTGTGGAACTACGCTAAGATTCTACTTGgatGCAGCGAT
GCACCCAGATTCAGTCTTTCATGCACCACCATCCTCTCCCTTTGGACCTT
TACAAGAAAATCAACACAAGGTTGCATTCTTTGAGTTGGATGGAGCTGAA
CTCGACATGCTGGACGATGGAAAGGTTTTCAGAAGACGCTTGCGGAAATC
TGTGTACTCGAAAATTTACCGACAACATTTATTTCAAGTGAAACTAAATA
AAATCCATTCTACGTACGCTTTCCAAACCTCGTCCCAGTCTTCCTTATTC
ACGTGgATTTCAAAACTTCAAGAAAGCATTGATGCAATTGAAAATAACGA
GGTATGTATGATATTATGAATGGACGAGATAATGATGGAGGAAGAGttAC
CTCTACCCGAAGAAGATGACAATTTGGTGGACTTGAAATATATTCATTGG
GGATATTTGAATTGTTGTCAAACATTGTATAAAGGTCGCAAAGCAAAGCA
CGAAGTATGGAATACTTATTGGGTCACTCTTTGTGGAACTACGCTAAGAT
TCTACTTGgatGCAGCGATGCACCCAGATTCAGTCTTTCATGCACCACCA
TCCTCTCCCTTTGGACCTTTACAAGAAAATCAACACAAGGTTGCATTCTT
TGAGTTGGATGGAGCTGAACTCGACATGCTGGACGATGGAAAGGTTTTCA
GAAGACGCTTGCGGAAATCTGTGTACTCGAAAATTTACCGACAACATTTA
TTTCAAGTGAAACTAAATAAAATCCATTCTACGTACGCTTTCCAAACCTC
GTCCCAGTCTTCCTTATTCACGTGgATTTCAAAACTTCAAGAAAGCATTG
ATGCAATTGAAAATAACGAGGTATGTATGATATTATGAATGGACGAGATA
ATGATGGAGGAAGAGttACCTCTACCCGAAGAAGATGACAATTTGGTGGA
CTTGAAATATATTCATTGGGGATATTTGAATTGTTGTCAAACATTGTATA
AAGGTCGCAAAGCAAAGCACGAAGTATGGAATACTTATTGGGTCACTCTT
TGTGGAACTACGCTAAGATTCTACTTGgatGCAGCGATGCACCCAGATTC
AGTCTTTCATGCACCACCATCCTCTCCCTTTGGACCTTTACAAGAAAATC
AACACAAGGTTGCATTCTTTGAGTTGGATGGAGCTGAACTCGACATGCTG
GACGATGGAAAGGTTTTCAGAAGACGCTTGCGGAAATCTGTGTACTCGAA
AATTTACCGACAACATTTATTTCAAGTGAAACTAAATAAAATCCATTCTA
CGTACGCTTTCCAAACCTCGTCCCAGTCTTCCTTATTCACGTGgATTTCA
AAACTTCAAGAAAGCATTGATGCAATTGAAAATAACGAGGTATGTATGAT
ATTATGAATGGACGAGATAATGATGGAGGAAGAGttACCTCTACCCGAAG
AAGATGACAATTTGGTGGACTTGAAATATATTCATTGGGGATATTTGAAT
TGTTGTCAAACATTGTATAAAGGTCGCAAAGCAAAGCACGAAGTATGGAA
TACTTATTGGGTCACTCTTTGTGGAACTACGCTAAGATTCTACTTGgatG
CAGCGATGCACCCAGATTCAGTCTTTCATGCACCACCATCCTCTCCCTTT
GGACCTTTACAAGAAAATCAACACAAGGTTGCATTCTTTGAGTTGGATGG
AGCTGAACTCGACATGCTGGACGATGGAAAGGTTTTCAGAAGACGCTTGC
GGAAATCTGTGTACTCGAAAATTTACCGACAACATTTATTTCAAGTGAAA
CTAAATAAAATCCATTCTACGTACGCTTTCCAAACCTCGTCCCAGTCTTC
CTTATTCACGTGgATTTCAAAACTTCAAGAAAGCATTGATGCAATTGAAA
ATAACGAGGTATGTATGATATTATGAATGGACGAGATAATGATGGAGGAA
GAGttACCTCTACCCGAAGAAGATGACAATTTGGTGGACTTGAAATATAT
TCATTGGGGATATTTGAATTGTTGTCAAACATTGTATAAAGGTCGCAAAG
CAAAGCACGAAGTATGGAATACTTATTGGGTCACTCTTTGTGGAACTACG
CTAAGATTCTACTTGgatGCAGCGATGCACCCAGATTCAGTCTTTCATGC
ACCACCATCCTCTCCCTTTGGACCTTTACAAGAAAATCAACACAAGGTTG
CATTCTTTGAGTTGGATGGAGCTGAACTCGACATGCTGGACGATGGAAAG
GTTTTCAGAAGACGCTTGCGGAAATCTGTGTACTCGAAAATTTACCGACA
ACATTTATTTCAAGTGAAACTAAATAAAATCCATTCTACGTACGCTTTCC
AAACCTCGTCCCAGTCTTCCTTATTCACGTGgATTTCAAAACTTCAAGAA
AGCATTGATGCAATTGAAAATAACGAGGTATGTATGATATTATGAATGGA
CGAGATAATGATGGAGGAAGAGttACCTCTACCCGAAGAAGATGACAATT
TGGTGGACTTGAAATATATTCATTGGGGATATTTGAATTGTTGTCAAACA
TTGTATAAAGGTCGCAAAGCAAAGCACGAAGTATGGAATACTTATTGGGT
CACTCTTTGTGGAACTACGCTAAGATTCTACTTGgatGCAGCGATGCACC
CAGATTCAGTCTTTCATGCACCACCATCCTCTCCCTTTGGACCTTTACAA
GAAAATCAACACAAGGTTGCATTCTTTGAGTTGGATGGAGCTGAACTCGA
CATGCTGGACGATGGAAAGGTTTTCAGAAGACGCTTGCGGAAATCTGTGT
ACTCGAAAATTTACCGACAACATTTATTTCAAGTGAAACTAAATAAAATC
CATTCTACGTACGCTTTCCAAACCTCGTCCCAGTCTTCCTTATTCACGTG
gATTTCAAAACTTCAAGAAAGCATTGATGCAATTGAAAATAACGAGGTAT
GTATGATATTATGAATGGACGAGATAATGATGGAGGAAGAGttACCTCTA
CCCGAAGAAGATGACAATTTGGTGGACTTGAAATATATTCATTGGGGATA
TTTGAATTGTTGTCAAACATTGTATAAAGGTCGCAAAGCAAAGCACGAAG
TATGGAATACTTATTGGGTCACTCTTTGTGGAACTACGCTAAGATTCTAC
TTGgatGCAGCGATGCACCCAGATTCAGTCTTTCATGCACCACCATCCTC
TCCCTTTGGACCTTTACAAGAAAATCAACACAAGGTTGCATTCTTTGAGT
TGGATGGAGCTGAACTCGACATGCTGGACGATGGAAAGGTTTTCAGAAGA
CGCTTGCGGAAATCTGTGTACTCGAAAATTTACCGACAACATTTATTTCA
AGTGAAACTAAATAAAATCCATTCTACGTACGCTTTCCAAACCTCGTCCC
AGTCTTCCTTATTCACGTGgATTTCAAAACTTCAAGAAAGCATTGATGCA
ATTGAAAATAACGAGGTATGTATGATATTATGAATGGACGAGATAATGAT
GGAGGAAGAGttACCTCTACCCGAAGAAGATGACAATTTGGTGGACTTGA
AATATATTCATTGGGGATATTTGAATTGTTGTCAAACATTGTATAAAGGT
CGCAAAGCAAAGCACGAAGTATGGAATACTTATTGGGTCACTCTTTGTGG
AACTACGCTAAGATTCTACTTGgatGCAGCGATGCACCCAGATTCAGTCT
TTCATGCACCACCATCCTCTCCCTTTGGACCTTTACAAGAAAATCAACAC
AAGGTTGCATTCTTTGAGTTGGATGGAGCTGAACTCGACATGCTGGACGA
TGGAAAGGTTTTCAGAAGACGCTTGCGGAAATCTGTGTACTCGAAAATTT
ACCGACAACATTTATTTCAAGTGAAACTAAATAAAATCCATTCTACGTAC
GCTTTCCAAACCTCGTCCCAGTCTTCCTTATTCACGTGgATTTCAAAACT
TCAAGAAAGCATTGATGCAATTGAAAATAACGAGGTATGTATGATATTAT
GA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029688XLOC_029688Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046509-exon-scaffold_113-1491911889:330438..330456TCONS_00046509-exon-scaffold_113-1491911889:330438..330456Clytia hemisphaericaexon
TCONS_00046509-exon-scaffold_113-1510915933:330438..330456TCONS_00046509-exon-scaffold_113-1510915933:330438..330456Clytia hemisphaericaexon
TCONS_00046509-exon-scaffold_113-1575043694:330438..330456TCONS_00046509-exon-scaffold_113-1575043694:330438..330456Clytia hemisphaericaexon
TCONS_00046509-exon-scaffold_113-1491911889:333685..333735TCONS_00046509-exon-scaffold_113-1491911889:333685..333735Clytia hemisphaericaexon
TCONS_00046509-exon-scaffold_113-1510915933:333685..333735TCONS_00046509-exon-scaffold_113-1510915933:333685..333735Clytia hemisphaericaexon
TCONS_00046509-exon-scaffold_113-1575043694:333685..333735TCONS_00046509-exon-scaffold_113-1575043694:333685..333735Clytia hemisphaericaexon
TCONS_00046509-exon-scaffold_113-1491911889:335665..335715TCONS_00046509-exon-scaffold_113-1491911889:335665..335715Clytia hemisphaericaexon
TCONS_00046509-exon-scaffold_113-1510915933:335665..335715TCONS_00046509-exon-scaffold_113-1510915933:335665..335715Clytia hemisphaericaexon
TCONS_00046509-exon-scaffold_113-1575043694:335665..335715TCONS_00046509-exon-scaffold_113-1575043694:335665..335715Clytia hemisphaericaexon
TCONS_00046509-exon-scaffold_113-1491911889:336603..336653TCONS_00046509-exon-scaffold_113-1491911889:336603..336653Clytia hemisphaericaexon
TCONS_00046509-exon-scaffold_113-1510915933:336603..336653TCONS_00046509-exon-scaffold_113-1510915933:336603..336653Clytia hemisphaericaexon
TCONS_00046509-exon-scaffold_113-1575043694:336603..336653TCONS_00046509-exon-scaffold_113-1575043694:336603..336653Clytia hemisphaericaexon
TCONS_00046509-exon-scaffold_113-1491911889:338078..338137TCONS_00046509-exon-scaffold_113-1491911889:338078..338137Clytia hemisphaericaexon
TCONS_00046509-exon-scaffold_113-1510915933:338078..338137TCONS_00046509-exon-scaffold_113-1510915933:338078..338137Clytia hemisphaericaexon
TCONS_00046509-exon-scaffold_113-1575043694:338078..338137TCONS_00046509-exon-scaffold_113-1575043694:338078..338137Clytia hemisphaericaexon
TCONS_00046509-exon-scaffold_113-1491911889:338780..338848TCONS_00046509-exon-scaffold_113-1491911889:338780..338848Clytia hemisphaericaexon
TCONS_00046509-exon-scaffold_113-1510915933:338780..338848TCONS_00046509-exon-scaffold_113-1510915933:338780..338848Clytia hemisphaericaexon
TCONS_00046509-exon-scaffold_113-1575043694:338780..338848TCONS_00046509-exon-scaffold_113-1575043694:338780..338848Clytia hemisphaericaexon
TCONS_00046509-exon-scaffold_113-1491911889:340383..340448TCONS_00046509-exon-scaffold_113-1491911889:340383..340448Clytia hemisphaericaexon
TCONS_00046509-exon-scaffold_113-1510915933:340383..340448TCONS_00046509-exon-scaffold_113-1510915933:340383..340448Clytia hemisphaericaexon
TCONS_00046509-exon-scaffold_113-1575043694:340383..340448TCONS_00046509-exon-scaffold_113-1575043694:340383..340448Clytia hemisphaericaexon
TCONS_00046509-exon-scaffold_113-1491911889:342077..342207TCONS_00046509-exon-scaffold_113-1491911889:342077..342207Clytia hemisphaericaexon
TCONS_00046509-exon-scaffold_113-1510915933:342077..342207TCONS_00046509-exon-scaffold_113-1510915933:342077..342207Clytia hemisphaericaexon
TCONS_00046509-exon-scaffold_113-1575043694:342077..342207TCONS_00046509-exon-scaffold_113-1575043694:342077..342207Clytia hemisphaericaexon
TCONS_00046509-exon-scaffold_113-1491911889:343545..343715TCONS_00046509-exon-scaffold_113-1491911889:343545..343715Clytia hemisphaericaexon
TCONS_00046509-exon-scaffold_113-1510915933:343545..343715TCONS_00046509-exon-scaffold_113-1510915933:343545..343715Clytia hemisphaericaexon
TCONS_00046509-exon-scaffold_113-1575043694:343545..343715TCONS_00046509-exon-scaffold_113-1575043694:343545..343715Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046509-proteinTCONS_00046509-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_113supercontigscaffold_113:330438..343715 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.654772	0	0.629082	0	0	0	0	2.75621e-06	9.57393	0	3.99784	1.67128e-05	2.26879	0.247813	8.52067e-09	2.92501	4.88291	5.14901	1.32053	0	1.53479	0.343802	3.03809	0	0	0	0	0.294251	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001849PH_domain
IPR011993PH_dom-like
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046509 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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