TCONS_00046514 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046514
Unique NameTCONS_00046514
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1158

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046514 ID=TCONS_00046514|Name=TCONS_00046514|organism=Clytia hemisphaerica|type=transcript|length=1158bp
CGTCATGCGCATATGTGATGCAGGAGaataatcaaaatggtagaGCTAAT
TGAACACTGACTTGTTACTAAGGAGCAAGCTTTTTGTGTTTTTCGGTCCT
ACTAGAAACAGaccagacgtCAAACCACCACGTAACGAACGTCGAACGTT
GAAACTTCAGAAAACAGAAGATGAAGGATTTGGATTCTGGTTACAGACTT
ACGCTTTCCCCAAGAATGGAGGAGAAGCTCAAAAACGGACTTTTGTCCGC
TACGTGGAAGACGAGGGAGCAGCTTATATGGCAGGTCTTCGTGAAGGAGA
CATCATCGTAGAGGTGGGAGAACAAAACGTGGAACAAATGGACCATATAA
AAATCGTGCAATTGATCACTGAAGAGAAAACTGAATTAAGATTGGTGGTG
AAATTTATCGATGCTGTCCGACGTGTGGAGCTTGCTGTCCGATTGAAGAA
AAAGCAGACGAAATTAAAGACAAAAGAAGAAGAGTTAATTCGCATTAAAC
AACAAGAGTACGATTTGTTAAATGGAATAATAACATACGAACCTTGTGGC
TCCCCTAAGTCAGAGGACGGTGACGAAATATCTCTCCACACTTCAACAGA
ATCCGAAATCTCATCCATTTCATCGACACAATCGGATGAACTGACCGTCC
GAACCAGCAAATTCAATAAACGTTCATCTCGCGTATTGGATTCAATAAAA
GAACTCAATTGTAACGATAATGTTTCAGGTTATTCAATATCAGATTGGAA
TAATGTTTCTAAAACGACTGATGATGAATTGCTAAGTTTATACTGTGACA
AAATGGACTACCATAATAGCTTACCAAGAGGTTGCCCTAAAAACTTAAAA
CGTGGAGACAGTATGCCAGCACATAAATATCGTTCTTTACCTCGTAAACG
AATCGTAGACACTTCATCGGAAAGTATATCAAATTATACTCGAGAATATG
CACTCGATTATTCGAACGAACAATTCGATTCATTCGATTTTGATGACGGT
GAATCGAGTGACGATTGTTCGTCTTCTCGATCCAGCATCGGAGGAACCGT
TTTTCAAAACCTCGATCGAGCTCCCAGACGGAATCGACCGAAATcgtaca
aaatggcaatgcacTCTTTGAAACATTTAGAGGGTGATGTGGCGGAGCTG
TAATAAAN
Run BLAST on NCBI

transcript from alignment at scaffold_113:386985..390274+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046514 ID=TCONS_00046514|Name=TCONS_00046514|organism=Clytia hemisphaerica|type=transcript|length=3290bp|location=Sequence derived from alignment at scaffold_113:386985..390274+ (Clytia hemisphaerica)
CGTCATGCGCATATGTGATGCAGGAGaataatcaaaatggtagaGCTAAT
TGAACACTGACTTGTTACTAAGGAGCAAGCTTTTTGTGTTTTTCGGTCCT
ACTAGAAACAGGTCATTTTTCATGCTTTTTAAACGTCTGCTTATTGGATG
CTGCCCCTAGTTTTTACAATGGTGAAAACTTTTAAAGGCTtgtttatgga
aaaaattttgcCTGCCAGCGAACGCCGCCTTGGCCTTCTAGATTATGGCC
TGGGACAGGTTCTTGATTTTTAATAATCAATCATACAATAAATAAAGCAC
TGCCAAAATCGGTGAAGGATTCtttataaaagaaacaaaatctTTGTTCA
TGTTGTGTTCAAAAAGCGCCGCTCTAAAGGTCATGGCTTGAAATCGCTGT
TGGGAACTCTCAAATATTTATATTCGCTCAattagaaagatttttcattc
ctTTTTCGCATGCGTTGGGTTTCTTTCAACAAAAGGATTTTAGCTCTTTT
TTTTTCCGTGCTTCGAGATTTTCATTAATTAAACTGTGAGTAAGAAGAAG
AATTTTTACGCaataaaacatttctttttccGAAAATCACAGCGCAGGAC
TAACATAAAGACACCGTTTACACgcaattttgatcaaaaaattttcttca
ttttcctcCAATAGAAATTCTTCATAGTATTCAATTGCGTAATCCGGATT
TGAAGCAGAAAAGGATCTGTTGTAAAAATCGGATTACACGAGCCTAAAGT
ATCACCGTACTATTTTAGCCTCATCATGAATATATTGATTTTAGTTCGAA
AAAGAGAATGAAAATCAGACATTTATGATCTGTTCATTAATTGATCAATG
AAATAATCAAACAACCGCGTTACCGCAATCTCTTTTGTCTGTCTCTATTT
GTAAACCGTGAAAGAATTTTGCgtaatgatttcaaaaaaaaaatggttcA
CTTCTTTTATTCCTAATTTTCAGGCTTCACTTATATCATTTCTCAACAAT
CTAACAATATGTTatgctcttaaaatgttctaacgCGATTTGAAGGTTCC
CTGGTCAGTTTCCCTCATTTCATACACAAACGCTGATCTAACTAAGTTTT
GATtttcgtgtattttacagaccagacgtCAAACCACCACGTAACGAACG
TCGAACGTTGAAACTTCAGAAAACAGAAGATGAAGGATTTGGATTCTGGT
TACAGGTAAGTGTCCCCATGACAACCcatgtttatgtttattttttggTG
GCCATTATGAATTTATGAATCATTGCATGATTGTTTTAACGCATGAATTC
GGTCATGAATATTAATACATTGCGTGAATGTGAAACGGAATTTTCAACAG
GCGCCGATAGATGCTCCATTCATCGATTTGAATGAATTTACTTTGTTTTA
CTTCAATGTTGAGtctgtgttttttgttttgttgttatgGTGATAAAGCA
ATGACATAAAGCTGTGTTTAGCCTGTCTTTCTCAATCCGTTCTTATTAAT
TGGCTGTACAATAGACACTTGATAATGTCATTAACTCAATTTTTAAGTTC
TTAATACTCTCATATTGATCTTAATAAGAAGTCAGCCTAGTGCTAATTAA
ACTGCGTCAAAAATACGAAAGACGTTAAAAAGAAAGACGTTATTATTGTC
CATATTCCGACCAATACTTCAAGTAATCGTTTTTTCCCTTTTCAGACTTA
CGCTTTCCCCAAGAATGGAGGAGAAGCTCAAAAACGGACTTTTGTCCGCT
ACGTGGAAGACGAGGGAGCAGCTTATATGGCAGGTCTTCGTGAAGGAGAC
ATCATCGTAGAGGTGGGAGAACAAAACGTGGAACAAATGGACCATATAAA
AATCGTGCAATTGATCACTGAAGAGAAAACTGAATTAAGGTACTTCGTTT
TTTGTTCTTGGGGAAATTCCCAATGTACTGTAATCTGTCACCACAAGTAA
ATTATAAACGACTTGATATTGGTTAAATGAGATTCCTCACGACAACTTAC
TTTCTAACCTACTTTGATGTTTGGATGTTTCacataaaatataatttttg
gcGGATTCACTGTGATCCTTATCTGAGAAATTAAATTGAACTTTTCTACG
TCTATGTTGTCATAGTTACGGTAACGATTTGTTTGGCCCTTTTAGATTGG
TGGTGAAATTTATCGATGCTGTCCGACGTGTGGAGCTTGCTGTCCGATTG
AAGAAAAAGCAGACGAAATTAAAGACAAAAGAAGAAGAGTTAATTCGCAT
TAAACAACAAGAGTACGATTTGTTAAATGGAAGTAAGTCACCCTTCTCAT
TTCACTTTCCAACTTCAACTCATGCTGAATTTTCTTACGTATAAATTGGT
ATGGCAGGGAGATATGTTTTTAAGGTTTTTGACATGGTGATACTGTCAAA
AGAATAGACACTTTGCAAATGCTCACATTCTCTTTGATTTTCGTGTGAAG
TTGCtcctaattcatgatatgcatcattgcATTGTCTTCCacgctgattg
gttgaaagtaacgttATTGACTGATTTAATGTCAGAAGGCATTGCAATTG
TGATTATCATGAATAAATGTAGTGAACTATTTAGCGTTAAAAAGCTCTCA
ATAAAGTTACTTATAAAGCAATACATTTAAACAAATTCTTCGTATCTTTC
TTCTTCCAGTAATAACATACGAACCTTGTGGCTCCCCTAAGTCAGAGGAC
GGTGACGAAATATCTCTCCACACTTCAACAGAATCCGAAATCTCATCCAT
TTCATCGACACAATCGGATGAACTGACCGTCCGAACCAGCAAATTCAATA
AACGTTCATCTCGCGTATTGGATTCAATAAAAGAACTCAATTGTAACGAT
AATGTTTCAGGTTATTCAATATCAGATTGGAATAATGTTTCTAAAACGAC
TGATGATGAATTGCTAAGTTTATACTGTGACAAAATGGACTACCATAATA
GCTTACCAAGAGGTTGCCCTAAAAACTTAAAACGTGGAGACAGTATGCCA
GCACATAAATATCGTTCTTTACCTCGTAAACGAATCGTAGACACTTCATC
GGAAAGTATATCAAATTATACTCGAGAATATGCACTCGATTATTCGAACG
AACAATTCGATTCATTCGATTTTGATGACGGTGAATCGAGTGACGATTGT
TCGTCTTCTCGATCCAGCATCGGAGGAACCGTTTTTCAAAACCTCGATCG
AGCTCCCAGACGGAATCGACCGAAATcgtacaaaatggcaatgcacTCTT
TGAAACATTTAGAGGGTGATGTGGCGGAGCTGTAATAAAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029690XLOC_029690Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046514-exon-scaffold_113-1491911889:386985..387095TCONS_00046514-exon-scaffold_113-1491911889:386985..387095Clytia hemisphaericaexon
TCONS_00046514-exon-scaffold_113-1510915933:386985..387095TCONS_00046514-exon-scaffold_113-1510915933:386985..387095Clytia hemisphaericaexon
TCONS_00046514-exon-scaffold_113-1575043694:386985..387095TCONS_00046514-exon-scaffold_113-1575043694:386985..387095Clytia hemisphaericaexon
TCONS_00046514-exon-scaffold_113-1491911889:388105..388189TCONS_00046514-exon-scaffold_113-1491911889:388105..388189Clytia hemisphaericaexon
TCONS_00046514-exon-scaffold_113-1510915933:388105..388189TCONS_00046514-exon-scaffold_113-1510915933:388105..388189Clytia hemisphaericaexon
TCONS_00046514-exon-scaffold_113-1575043694:388105..388189TCONS_00046514-exon-scaffold_113-1575043694:388105..388189Clytia hemisphaericaexon
TCONS_00046514-exon-scaffold_113-1491911889:388680..388873TCONS_00046514-exon-scaffold_113-1491911889:388680..388873Clytia hemisphaericaexon
TCONS_00046514-exon-scaffold_113-1510915933:388680..388873TCONS_00046514-exon-scaffold_113-1510915933:388680..388873Clytia hemisphaericaexon
TCONS_00046514-exon-scaffold_113-1575043694:388680..388873TCONS_00046514-exon-scaffold_113-1575043694:388680..388873Clytia hemisphaericaexon
TCONS_00046514-exon-scaffold_113-1491911889:389130..389266TCONS_00046514-exon-scaffold_113-1491911889:389130..389266Clytia hemisphaericaexon
TCONS_00046514-exon-scaffold_113-1510915933:389130..389266TCONS_00046514-exon-scaffold_113-1510915933:389130..389266Clytia hemisphaericaexon
TCONS_00046514-exon-scaffold_113-1575043694:389130..389266TCONS_00046514-exon-scaffold_113-1575043694:389130..389266Clytia hemisphaericaexon
TCONS_00046514-exon-scaffold_113-1491911889:389644..390274TCONS_00046514-exon-scaffold_113-1491911889:389644..390274Clytia hemisphaericaexon
TCONS_00046514-exon-scaffold_113-1510915933:389644..390274TCONS_00046514-exon-scaffold_113-1510915933:389644..390274Clytia hemisphaericaexon
TCONS_00046514-exon-scaffold_113-1575043694:389644..390274TCONS_00046514-exon-scaffold_113-1575043694:389644..390274Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_113supercontigscaffold_113:386985..390274 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.22622	3.25142	1.79635	1.04093	17.881	12.7199	37.7613	35.5258	15.1105	19.8082	21.1526	14.5207	27.6172	27.984	15.7004	16.773	49.7462	46.9077	44.4453	38.3514	32.8442	30.9776	21.7926	22.5061	35.6163	37.0184	39.4642	34.3786	19.3187	20.7138
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046514 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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