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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046515 ID=TCONS_00046515|Name=TCONS_00046515|organism=Clytia hemisphaerica|type=transcript|length=2475bp
CTTCGCAGAAAGATCAATATTTCTGCCACGCTACAGTAACCATTACGCAA
AACCAAAAGTGAAAAGGAAGAGTTGCATTACTCACAGTATATACTTAAAG
AAAGCCACgtaaatttgaattgaatttttggGAATTTGAGTGGCTTCGAA
ATGAGGCTGTTATcggttttattttttgttggCCTGACTTcctATGTCCA
GTCAAAGGCATGCGATGCAGGTGGTGCTATTTCCGCCTGTCGATCCGCCT
GTCCGGCCGAAGTTGAAGAAGAAGTAGTAACCGATGTCTGCGTCAAGGCC
AAACCAAAATGTTGTAAATCCTTGTGTGCTGGTCCAGGGTCCATGTGTCT
TGCTGCTGGCTCTGTATGCCCTGATGGTACTGTAGGTGCTGTAGCGCTTA
CCCCCTGCCCACTTGGTGGTGTCTGCTGCCAGGGTCCACCTGCTCCACCA
GATTGGCCTGTGGACTACCCATGGCCCCCAATGGAATGGCCACCAAATTA
CGTATTCCCTGTCGCTTGGCTCGAAAGATATGATTACCTTCCATATTACT
GGCCTAAACCACCAAGTTCAGTATGGCCAAAAGGTGCTGATCCTGTCCCT
GTAGCTGATGCTCCTGAACCTTCAAATGATGCTCCCGAAGCACCTGCTGA
CCCTCTAGCAGCACCTGCAACTGCCCCTGCCCCTGAGGCTCCAGAAGCCT
CCGAACCTGCTGACGCACCTGAAGCTACAGAGGCGCCGGAAGCTTCAGAA
CCAGCTGAGGAAGCTGAACAAACGGAGCAGCCAGACGCAGCACCCGAACA
ACCAGAAGCATCCGAACCACCAAAAGAGGCAGATCAACCTGACGCACAGC
CAGACGTCCCAGAGCAACAAGACTCAGCACCAGAGCAACCCGAAACACCC
GAACAACCAGCTGCTGATGCTCCAGCCCAAACAGATCCACCTGCTCCCGC
TCCCGCTCCCGCTCCGGAACCACAACAGCCAGAAGAAAACAAAGACAACA
AGAAACAAGCCAAATTCTTGAAGAAGAAGACCAAAAAATCGAAGAAGAAT
AAGaaagctaaaaagtcaaaaaagcacCATTAATTTATGGCAAACATCAA
CCATACTTATAAGTAGAAGTTTAAATTATAGCTATTTAGGAAGATAATTC
GTTTTTTGTAATatatattatgatttttttgtaagatatttgtATCTAGA
ATGTCTAGCTAATCGTTTTACTTGGGAACGATGATTTTGTTGTTTAGGAG
AGGTTATCTTTTTGTTCCCAGGAAAACCGTTTAGAAGGTATACTTCTATA
CTTGAAAACGGTTCAATTAGCTTTGCAttctcaaacatttttttctcgtt
GAAAATATATGTATATGTATTATCTGTAAGAATCGTCAAAAAAGACTTTC
TTGATTTGGTCATGGAACAGAGTTACAGATAGAACGTTCAATATTATATA
TTAATTTTCTCATCCCCGCGGAAACGTTCCTGGCATTCCCGTTcccgaaa
aaatatttctattgctACGTGGACAATGCAGACTCTGGAGTGTTGATCTT
TTTCCGTTGTAAAGTTTCTTCAGGAAATATTTCCCCAGATATGAGAAAAT
TAAGCCATCCTACGGTAATAGTTATTTTgagtcaatagaccttttcataa
attacgtcacaaacatcacttgcctcgcaTTCGAACGATTGCCATGGTGA
TCATAGCCCTTGAgacaatgattttttatgaatagaaagtagttttaata
aaatccgctgggagttaatcaccatggccaTAATTTCAAAGCGAGGCAAG
TGATGTAAtctatgaaaaggtctattagacaggcagctgacgacATCTAA
AATCTGGACGTCTTTGGGACAAACGTcgagttgatttttcttgttcccat
atatctactgatcctaaaaattttactcggcgtccgaaaatttatttaac
ggacatgtccggtagtaatttgtcaaatgatgacgtcaccaccaaaagtg
aaaatttgatttcagcatATAATAACGATATATATACCATTCGACGCATT
TTTCGCCCTAGATTCTaaatcacatcagtctcaataggtaaaaatttaga
tttcaaaagttatgacttaaaTTTGACATGTGATTTTGGTCAATCATGNa
aatgaaattttgcaacatcaatttttcacttttgcttgtgacgtcatcaa
ttgataaattattctcggacacgtccggtaaagatttttaaacacgccga
gtaaatttttctgactctctaaactataaagatttctaaataaatactca
atatttgtccctcgaattttcactgattcactttttttgatgtatcagct
gcctgtctatatCAATACAATTTTGAGCATCTTTCTGTACCTAACTATTT
CGTTTTTTACTTAGTCAATTGTAATTTATTGATTatgtataaaaacaaaa
taaattctaaatacTATTAAAATAG Run BLAST on NCBI protein sequence of TCONS_00046515-protein >TCONS_00046515-protein ID=TCONS_00046515-protein|Name=TCONS_00046515-protein|organism=Clytia hemisphaerica|type=polypeptide|length=310bp
MRLLSVLFFVGLTSYVQSKACDAGGAISACRSACPAEVEEEVVTDVCVKA
KPKCCKSLCAGPGSMCLAAGSVCPDGTVGAVALTPCPLGGVCCQGPPAPP
DWPVDYPWPPMEWPPNYVFPVAWLERYDYLPYYWPKPPSSVWPKGADPVP
VADAPEPSNDAPEAPADPLAAPATAPAPEAPEASEPADAPEATEAPEASE
PAEEAEQTEQPDAAPEQPEASEPPKEADQPDAQPDVPEQQDSAPEQPETP
EQPAADAPAQTDPPAPAPAPAPEPQQPEENKDNKKQAKFLKKKTKKSKKN
KKAKKSKKHH Run BLAST on NCBI transcript from alignment at scaffold_113:394842..398333+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046515 ID=TCONS_00046515|Name=TCONS_00046515|organism=Clytia hemisphaerica|type=transcript|length=3492bp|location=Sequence derived from alignment at scaffold_113:394842..398333+ (Clytia hemisphaerica)
CTTCGCAGAAAGATCAATATTTCTGCCACGCTACAGTAACCATTACGCAA
AACCAAAAGTGAAAAGGAAGAGTTGCATTACTCACAGTATATACTTAAAG
AAAGCCACgtaaatttgaattgaatttttggGAATTTGAGTGGCTTCGAA
ATGAGGCTGTTATcggttttattttttgttggCCTGACTTGTAAGTAAAT
GTTATCATCAATCTTCCCTTTCGTACCTCCCTTTTCTTTcaatatttctt
ctttttatgtttcaaaaataaatattgacaaaataatTTATTCTCAAATA
AGGTAAACCCTTCTAAATGCTTGCGCGTGGGACTATACTTTTACacggtt
tttttaagaatattcttGATGagattgggacaagctggagtttatACAAG
CTCTttcttgatttggttggtcgttagcctgtaataaaacaattttgtta
ctttttctaaagaacgcgtcatctctattactttaaatgaccaattagtg
aagtatcttataaaaactccaggaCATCTCATGAGAttggcaaaaaaaat
aagaatatgctaagaatatcaccatcatggaattttgcaactgaacctaa
gaatgccagtttttagagaattttatctgtaaattgccaattattcccCA
GCAATGTTAAgagctttcacaaaaatgccaaatctTCGCGCAAGGTATGT
ATTACAGTTGCGCAAAttgcctttaaaaaaaaaaaaaagtttcgaaaatt
CTTATCGTAAAAAAGTCGTTAGAAAAGAACAAAGAACGAAAAGAAGCGAA
AGAGATAGAGGTTAAATCTTATGTCGTAAAAGCTTCAGATAGTTATGTTG
GTTTTGTAGCAGTATAACCAATGGATGGATATTTTTCTATTAAACCCatc
ctttcttttttcattttagcctATGTCCAGTCAAAGGCATGCGATGCAGG
TGGTGCTATTTCCGCCTGTCGATCCGCCTGTCCGGCCGAAGTTGAAGAAG
AAGTAGTAACCGATGTCTGCGTCAAGGCCAAACCAAAATGTTGTAAATCC
TTGTGTGCTGGTCCAGGGTCCATGTGTCTTGCTGCTGGCTCTGTATGCCC
TGATGGTACTGTAGGTGCTGTAGCGCTTACCCCCTGCCCACTTGGTGGTG
TCTGCTGCCAGGGTCCACCTGCTCCACCAGATTGGCCTGTGGACTACCCA
TGGCCCCCAATGGAATGGCCACCAAATTACGTATTCCCTGTCGCTTGGCT
CGAAAGATATGATTACCTTCCATATTACTGGCCTAAACCACCAAGTTCAG
TATGGCCAAAAGGTGCTGATCCTGTCCCTGTAGCTGATGCTCCTGAACCT
TCAAATGATGCTCCCGAAGCACCTGCTGACCCTCTAGCAGCACCTGCAAC
TGCCCCTGCCCCTGAGGCTCCAGAAGCCTCCGAACCTGCTGACGCACCTG
AAGCTACAGAGGCGCCGGAAGCTTCAGAACCAGCTGAGGAAGCTGAACAA
ACGGAGCAGCCAGACGCAGCACCCGAACAACCAGAAGCATCCGAACCACC
AAAAGAGGCAGATCAACCTGACGCACAGCCAGACGTCCCAGAGCAACAAG
ACTCAGCACCAGAGCAACCCGAAACACCCGAACAACCAGCTGCTGATGCT
CCAGCCCAAACAGATCCACCTGCTCCCGCTCCCGCTCCCGCTCCGGAACC
ACAACAGCCAGAAGAAAACAAAGACAACAAGAAACAAGCCAGTAAGTATT
TCAACAGTTTCTCAACAGGCAGTTATGATGAACTTTTTATGTATCAACAA
TGATCCCAGGcttcaaactttcaataattgtcATCTACAATtttccccgt
gtatcccaggttttatttacgttactgattgacgccagagaatattaaaa
gctgataatacgcagggaacgaggttgcaaTCTTTACTGATTGGTACTTC
gcattttcatttgatttttaagTTCTTGAAAGTTTTCTATAAATGATAGC
GTCAaatccaaaatctttttcatttccagAATTCTTGAAGAAGAAGACCA
AAAAATCGAAGAAGAATAAGaaagctaaaaagtcaaaaaagcacCATTAA
TTTATGGCAAACATCAACCATACTTATAAGTAGAAGTTTAAATTATAGCT
ATTTAGGAAGATAATTCGTTTTTTGTAATatatattatgatttttttgta
agatatttgtATCTAGAATGTCTAGCTAATCGTTTTACTTGGGAACGATG
ATTTTGTTGTTTAGGAGAGGTTATCTTTTTGTTCCCAGGAAAACCGTTTA
GAAGGTATACTTCTATACTTGAAAACGGTTCAATTAGCTTTGCAttctca
aacatttttttctcgttGAAAATATATGTATATGTATTATCTGTAAGAAT
CGTCAAAAAAGACTTTCTTGATTTGGTCATGGAACAGAGTTACAGATAGA
ACGTTCAATATTATATATTAATTTTCTCATCCCCGCGGAAACGTTCCTGG
CATTCCCGTTcccgaaaaaatatttctattgctACGTGGACAATGCAGAC
TCTGGAGTGTTGATCTTTTTCCGTTGTAAAGTTTCTTCAGGAAATATTTC
CCCAGATATGAGAAAATTAAGCCATCCTACGGTAATAGTTATTTTgagtc
aatagaccttttcataaattacgtcacaaacatcacttgcctcgcaTTCG
AACGATTGCCATGGTGATCATAGCCCTTGAgacaatgattttttatgaat
agaaagtagttttaataaaatccgctgggagttaatcaccatggccaTAA
TTTCAAAGCGAGGCAAGTGATGTAAtctatgaaaaggtctattagacagg
cagctgacgacATCTAAAATCTGGACGTCTTTGGGACAAACGTcgagttg
atttttcttgttcccatatatctactgatcctaaaaattttactcggcgt
ccgaaaatttatttaacggacatgtccggtagtaatttgtcaaatgatga
cgtcaccaccaaaagtgaaaatttgatttcagcatATAATAACGATATAT
ATACCATTCGACGCATTTTTCGCCCTAGATTCTaaatcacatcagtctca
ataggtaaaaatttagatttcaaaagttatgacttaaaTTTGACATGTGA
TTTTGGTCAATCATGNaaatgaaattttgcaacatcaatttttcactttt
gcttgtgacgtcatcaattgataaattattctcggacacgtccggtaaag
atttttaaacacgccgagtaaatttttctgactctctaaactataaagat
ttctaaataaatactcaatatttgtccctcgaattttcactgattcactt
tttttgatgtatcagctgcctgtctatatCAATACAATTTTGAGCATCTT
TCTGTACCTAACTATTTCGTTTTTTACTTAGTCAATTGTAATTTATTGAT
TatgtataaaaacaaaataaattctaaatacTATTAAAATAG Coding sequence (CDS) from alignment at scaffold_113:394842..398333+ >TCONS_00046515 ID=TCONS_00046515|Name=TCONS_00046515|organism=Clytia hemisphaerica|type=CDS|length=2799bp|location=Sequence derived from alignment at scaffold_113:394842..398333+ (Clytia hemisphaerica)
ATGAGGCTGTTATcggttttattttttgttggCCTGACTTcctATGTCCA
GTCAAAGGCATGCGATGCAGGTGGTGCTATTTCCGCCTGTCGATCCGCCT
GTCCGGCCGAAGTTGAAGAAGAAGTAGTAACCGATGTCTGCGTCAAGGCC
AAACCAAAATGTTGTAAATCCTTGTGTGCTGGTCCAGGGTCCATGTGTCT
TGCTGCTGGCTCTGTATGCCCTGATGGTACTGTAGGTGCTGTAGCGCTTA
CCCCCTGCCCACTTGGTGGTGTCTGCTGCCAGGGTCCACCTGCTCCACCA
GATTGGCCTGTGGACTACCCATGGCCCCCAATGGAATGGCCACCAAATTA
CGTATTCCCTGTCGCTTGGCTCGAAAGATATGATTACCTTCCATATTACT
GGCCTAAACCACCAAGTTCAGTATGGCCAAAAGGTGCTGATCCTGTCCCT
GTAGCTGATGCTCCTGAACCTTCAAATGATGCTCCCGAAGCACCTGCTGA
CCCTCTAGCAGCACCTGCAACTGCCCCTGCCCCTGAGGCTCCAGAAGCCT
CCGAACCTGCTGACGCACCTGAAGCTACAGAGGCGCCGGAAGCTTCAGAA
CCAGCTGAGGAAGCTGAACAAACGGAGCAGCCAGACGCAGCACCCGAACA
ACCAGAAGCATCCGAACCACCAAAAGAGGCAGATCAACCTGACGCACAGC
CAGACGTCCCAGAGCAACAAGACTCAGCACCAGAGCAACCCGAAACACCC
GAACAACCAGCTGCTGATGCTCCAGCCCAAACAGATCCACCTGCTCCCGC
TCCCGCTCCCGCTCCGGAACCACAACAGCCAGAAGAAAACAAAGACAACA
AGAAACAAGCCAAATTCTTGAAGAAGAAGACCAAAAAATCGAAGAAGAAT
AAGaaagctaaaaagtcaaaaaagcacCATTAAATGAGGCTGTTATcggt
tttattttttgttggCCTGACTTcctATGTCCAGTCAAAGGCATGCGATG
CAGGTGGTGCTATTTCCGCCTGTCGATCCGCCTGTCCGGCCGAAGTTGAA
GAAGAAGTAGTAACCGATGTCTGCGTCAAGGCCAAACCAAAATGTTGTAA
ATCCTTGTGTGCTGGTCCAGGGTCCATGTGTCTTGCTGCTGGCTCTGTAT
GCCCTGATGGTACTGTAGGTGCTGTAGCGCTTACCCCCTGCCCACTTGGT
GGTGTCTGCTGCCAGGGTCCACCTGCTCCACCAGATTGGCCTGTGGACTA
CCCATGGCCCCCAATGGAATGGCCACCAAATTACGTATTCCCTGTCGCTT
GGCTCGAAAGATATGATTACCTTCCATATTACTGGCCTAAACCACCAAGT
TCAGTATGGCCAAAAGGTGCTGATCCTGTCCCTGTAGCTGATGCTCCTGA
ACCTTCAAATGATGCTCCCGAAGCACCTGCTGACCCTCTAGCAGCACCTG
CAACTGCCCCTGCCCCTGAGGCTCCAGAAGCCTCCGAACCTGCTGACGCA
CCTGAAGCTACAGAGGCGCCGGAAGCTTCAGAACCAGCTGAGGAAGCTGA
ACAAACGGAGCAGCCAGACGCAGCACCCGAACAACCAGAAGCATCCGAAC
CACCAAAAGAGGCAGATCAACCTGACGCACAGCCAGACGTCCCAGAGCAA
CAAGACTCAGCACCAGAGCAACCCGAAACACCCGAACAACCAGCTGCTGA
TGCTCCAGCCCAAACAGATCCACCTGCTCCCGCTCCCGCTCCCGCTCCGG
AACCACAACAGCCAGAAGAAAACAAAGACAACAAGAAACAAGCCAAATTC
TTGAAGAAGAAGACCAAAAAATCGAAGAAGAATAAGaaagctaaaaagtc
aaaaaagcacCATTAAATGAGGCTGTTATcggttttattttttgttggCC
TGACTTcctATGTCCAGTCAAAGGCATGCGATGCAGGTGGTGCTATTTCC
GCCTGTCGATCCGCCTGTCCGGCCGAAGTTGAAGAAGAAGTAGTAACCGA
TGTCTGCGTCAAGGCCAAACCAAAATGTTGTAAATCCTTGTGTGCTGGTC
CAGGGTCCATGTGTCTTGCTGCTGGCTCTGTATGCCCTGATGGTACTGTA
GGTGCTGTAGCGCTTACCCCCTGCCCACTTGGTGGTGTCTGCTGCCAGGG
TCCACCTGCTCCACCAGATTGGCCTGTGGACTACCCATGGCCCCCAATGG
AATGGCCACCAAATTACGTATTCCCTGTCGCTTGGCTCGAAAGATATGAT
TACCTTCCATATTACTGGCCTAAACCACCAAGTTCAGTATGGCCAAAAGG
TGCTGATCCTGTCCCTGTAGCTGATGCTCCTGAACCTTCAAATGATGCTC
CCGAAGCACCTGCTGACCCTCTAGCAGCACCTGCAACTGCCCCTGCCCCT
GAGGCTCCAGAAGCCTCCGAACCTGCTGACGCACCTGAAGCTACAGAGGC
GCCGGAAGCTTCAGAACCAGCTGAGGAAGCTGAACAAACGGAGCAGCCAG
ACGCAGCACCCGAACAACCAGAAGCATCCGAACCACCAAAAGAGGCAGAT
CAACCTGACGCACAGCCAGACGTCCCAGAGCAACAAGACTCAGCACCAGA
GCAACCCGAAACACCCGAACAACCAGCTGCTGATGCTCCAGCCCAAACAG
ATCCACCTGCTCCCGCTCCCGCTCCCGCTCCGGAACCACAACAGCCAGAA
GAAAACAAAGACAACAAGAAACAAGCCAAATTCTTGAAGAAGAAGACCAA
AAAATCGAAGAAGAATAAGaaagctaaaaagtcaaaaaagcacCATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046515-exon-scaffold_113-1491911889:394842..395031 | TCONS_00046515-exon-scaffold_113-1491911889:394842..395031 | Clytia hemisphaerica | exon |
| TCONS_00046515-exon-scaffold_113-1510915933:394842..395031 | TCONS_00046515-exon-scaffold_113-1510915933:394842..395031 | Clytia hemisphaerica | exon |
| TCONS_00046515-exon-scaffold_113-1575043694:394842..395031 | TCONS_00046515-exon-scaffold_113-1575043694:394842..395031 | Clytia hemisphaerica | exon |
| TCONS_00046515-exon-scaffold_113-1491911889:395761..396582 | TCONS_00046515-exon-scaffold_113-1491911889:395761..396582 | Clytia hemisphaerica | exon |
| TCONS_00046515-exon-scaffold_113-1510915933:395761..396582 | TCONS_00046515-exon-scaffold_113-1510915933:395761..396582 | Clytia hemisphaerica | exon |
| TCONS_00046515-exon-scaffold_113-1575043694:395761..396582 | TCONS_00046515-exon-scaffold_113-1575043694:395761..396582 | Clytia hemisphaerica | exon |
| TCONS_00046515-exon-scaffold_113-1491911889:396871..398333 | TCONS_00046515-exon-scaffold_113-1491911889:396871..398333 | Clytia hemisphaerica | exon |
| TCONS_00046515-exon-scaffold_113-1510915933:396871..398333 | TCONS_00046515-exon-scaffold_113-1510915933:396871..398333 | Clytia hemisphaerica | exon |
| TCONS_00046515-exon-scaffold_113-1575043694:396871..398333 | TCONS_00046515-exon-scaffold_113-1575043694:396871..398333 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_113 | supercontig | scaffold_113:394842..398333 + |
Blast
The following BLAST results are available for this feature:
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