TCONS_00046517 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046517
Unique NameTCONS_00046517
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1937

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046517 ID=TCONS_00046517|Name=TCONS_00046517|organism=Clytia hemisphaerica|type=transcript|length=1937bp
CAAAAGAATGTTTGCCGGCACTAATGATCGATCAGAGATGAAATGTTTAT
GGTAATTTGTACAGAATTGATGTCGAGGGAAACATGCCGAACTGGCATCT
TTGGGAAGTTATTATTGTATTTATATGTTAATTTTTGTAAATGGATTTGC
TAAGAATTGGATGATATATTTTATTAAGTCTTGATGAAGTCAATATTTGA
CGAATAACAGAGAAACATGCCTCGACCTCGAAATGGAGTTATTCCAAAAC
CCCTTCCTGCTGGCTGGGAAGAAGCAAAAACTAACGAGGGAAAATTTTAT
TACATTGACCACAACTCTCAGAAGACATCTTGGATTGATCCTAGGGATAG
GGAAATCAAACCAAAGACCTTTGCTGATTGTATAGGAAAAGAATTACCAA
TTGGGTGGGAAGAATGTCAAGACGACGTTATAGGAACTTATTTTACTGAC
CATAATGCTGAAAATAATCAGCTGGAGGATCCACGCCAACAATGGCACGA
AGAACAGCAGATTATGTTGGGTGATTATCTATTGCGCACTAAACTTGATA
TTGAGGCTCAACAAAACTTAGTTAATGTTAAACAACGACGCTTGCGATTG
GCACAAAATAAGGTCGATTATCTGGAAGGATTAGAGCGACAACATTTCGA
AACGAATTCCAGTCAAATGTCTCCAGCAAAAGCCCGTTATGATTCACATC
AACTCAAGTTTGACATTGCAAATGCCAGGGAAAGGGTTGGCAActtgaaa
aaagaattacaCAATGTATCCGATGAGGTGCGCCACCAACAAGAAGGACA
CGACAGACTGGAGAAAATTAACGAGACACTTTCAAGCAACGGCCCCTACC
AAGTGGACACGGCCCGCGAAAAAGTGACAGTAATGAACGATGTTCGCGAA
CAACTTTTACTCGGTGAACAAGAGAAAATCCACATACTTCAAGATTTGTT
ACGACAACGTGACGAATACCGTTCTGATATAGCTGGCTATAATCAGAAGG
CAGGATCATGCACAAGTTTAAACAGTACTGGAAGTAACGGACAACTCTCC
ATGAACGGTAGCGAAGAAAACGTCAACACTAATAAACGTCAACTGCGTAA
AGACTATCAACTCGCCTTACACCGTGTACAAAAACTTCAAGCTGGCCTTG
AACTTTTGAATCACCACTTAAGGAACACGCAGAACGGACCTGAACAACAT
CGTTTAGCATTATACAACGAGAAACAACAACTTTTTACTGAACTCCAGCG
CTGTGACGAATACATTAAAACCGAAGAGGCACGAATGCATCTTGAAAGCG
AGAAAGATTTATTAAGTAACGAACTAATCTCAATGAGAGACGTCTCCACG
AAAGTCATCGAAGATCGCAACAGATTAGAAAATGATCGTAAGATCTTGGA
AACGCATTTGGCCGAGAAAACCCGACAAACCAATCTACTGGAAATGAAAC
TAAAAAGTTTATCCACCAGCACTTTATCCGTCTCCTCTACTTCAAGCCGT
GGTTCGCTCTCAACTGGTAGCCGTGGCTCACTATCCGCTTCAAGTCGTGG
CTCACTAAATTCACTCGGACTTTACGGCTCGGATATGACGAATGGTGTAG
ATCACTATTCGAGTGGACTGTGTCATGCGCCCTCGACCGCCTGTCCGCCC
ATTTACGAGCAGAGTATATATTCATCTAGGGGCGAGACGACAGAAGGACT
TTCTATGACGTATGACCAACAAAATGGCCATCAATCAATGTCTAATTCTC
GTGTTTCTTTAACTTCTATTTCACCGCCCATTTCTCCTCTTACCGCGCCC
ATTAGTTATACAGATGTCGCAAACCTAAGACGCCCTATACACCCTGCTGG
CTCGAATGAACGACTACATAAAAGTgcTGAAGACGGACTGAACCATTATT
CGAACCCAGTAAACCAATACCAATTCATGATGGGAAG
Run BLAST on NCBI

transcript from alignment at scaffold_113:497959..508772+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046517 ID=TCONS_00046517|Name=TCONS_00046517|organism=Clytia hemisphaerica|type=transcript|length=10814bp|location=Sequence derived from alignment at scaffold_113:497959..508772+ (Clytia hemisphaerica)
CAAAAGAATGTTTGCCGGCACTAATGATCGATCAGAGATGAAATGTTTAT
GGTAATTTGTACAGAATTGATGTCGAGGGAAACATGCCGAACTGGCATCT
TTGGGAAGTTATTATTGTATTTATATGTTAATTTTTGTAAATGGATTTGC
TAAGAATTGGATGATATATTTTATTAAGTCTTGATGAAGTCAATATTTGA
CGAATAACAGAGAAACATGCCTCGACCTCGAAATGGAGTTATTCCAAAAC
CCCTTCCTGCTGGCTGGGAAGAAGCAAAAACTAACGAGGGAAAATTTTAT
TACATTGACCACAACTCTCAGAAGACATCTTGGATTGATCCTAGGGATAG
GTATGTTTAGgacatttttataaattatataattttttttactacaaAAT
CAATGAACCAAAATGTCACAGAAGGGGAaagagtttttgtttttttcttt
cattgaaacATTCCAATCATTCTTAAAAACATGATTATTTACTTAAGTTG
ATTTCATCATAAGTGAAATCAGGATAGCAATTATGTCACATGACACCATT
GATAACTGAGTGTATAAAATGCATTATCATGTGATCAAAAGACAAAACAC
AATGACATATGAATAATGCAAATTATTAATCATGGAGCCATGTTTGCATT
TAGCCCGGGACATAAATATGGCTTCTAAAACCAAATCAAGATCTATTTTC
AACTCTTAGTAATTGTAAATAAACTCCTTCAATTTCAAAGAGATGAACTG
AAGACTACTTTTAGCCTCCTATAAGTTTGCGACCTTACTTCAACAAGGTT
CCAACTCTGCAAATTGTGGTTCTCGGTAAAAGGCATTTGAAAACTCAGTG
ACTTCAAAGAAGACCTTAGTTTGAAGCTCGGGTCTTCACTTTCCTTTTtt
ctgttacaaaaatataattttagcaTGAATAAATCTTTGAAGCTGTGAAA
AACTATAATATTAAAGAGttattaaagaaataaaattttcgaTAGAACCT
TGCTGACTCGAAGACTCAGAAATGCGCAAAGTCAACAAGGTTCCATTTTA
CTAAAACTACTTcattttataaatttcaaagaagaaataacatgcaaaaa
tatttaaaaatcacaaaaaagacATAAACTAGCTTTTCCAGTTGGAATTT
TCACAAATTTAAGTtttataccgtaagttggtctaatgtcgacatccctc
ttctattTTCGACACCCCTATTAAGGGATAGGAATGATAGGAATGTCGGA
TTCACTGATGGAAATTTTTGTCTATTATTGATCCCGTATCAAAGAAATCT
TCTATTTTCATGATAGAACCTTTTTGACgttaaaatttttggaaaataca
tTATCGCGGATTGCGCTAAGGATTTTTGCTTGAAGATTTCCGATAGAACT
TTGTTGAAATGTGCCAAAGACCAAATTAACTGATAGAACTTTGTGGAATA
TGTTATTTTGAGCCATGGAATTAAGATATTGGAAAGTTTACAGCATTAAC
AATTAGTTTTTGGCATATTAAAACGTTAAGAAccaaaaaactcaattttt
tcaaaattcatgatAGAACCTTGTTGAAGTAAGGTCGAGAGTTATCAAAG
ATTATGCTTTTTCTTACATCAAAATGTTTGGCAAAGTGAAAAACGACAAG
CAAAATACCTAAGAGGTAAAAAGACTTAACAGCCCCATTCAGATTCCTAG
GGTAATAATAGGAGAGATATTACTTAACTAAGCTGTGCTGTCACCCTATA
GAATTTCATTGTCAAAAGAAATTATTGGCTGTAAAAACGTACATTTTCTG
ATAATAATATACCTAGCAAGAGAAATCTTATGAAAAAGTTCTGAAAAGTT
ACATTTTCACAGCCGTTTTTTACAGTGTGCCAAGTCTGCCCGAATCTTCC
CAGATAACATCCTATAAAGTATTAGCTCAAGTATTAGGGTTTTATTTCTG
TAATACACAGCAGATAATTTCCGGCCCAAATTTCTGGAGAAATCTAATAT
GCCGAACTGAGTCGATAGATCCACGTGTTCTTCCAAAAAACTTTGCAAAC
AAGATACAATTATACTGCACACTTAACCATTGTTATTTAAGGGACCCCTT
ACAAACAGCTATctttaagagaaaaaaagattttattctATCTAACAGCA
GCTCACTGATTATAAAGCTAATGATggattgatattttcatttcaataat
ttttgcaGTAGTTGCATGCTTCTGTCTTTGaaacaaaaggtgaaaaaaac
atGAAAGAATTAGGGGTATCTCTGGGTATCTTTAGAATAATAGTATAGCA
CCTTAAAtataattgataaaaataaacataaagAATTATATGCATCCATT
TATGGCTTCATGCCAAAATCAAGGGtatttaaaaaatcatattcaGGTAT
GAAAGGCACTTGAAAAGCGACCCTTCATCTGGATAATCTAACCTTGACAG
TTAGTCATTCTTGGAAATCACTTTTTTAGACAAAGCATGAATAGTcatct
tcaaaaaaatgtttgtttgccGTCACCACCTAACCAACCCTACTTCAAAA
GCTGCCTTacataaaattttattgccattttaaagaagatattttttcca
aaatccaGTCAGGAATTACCGGTAGtgtttgcaacaacaaggaatAGTTA
TCTGTATCAAAATCCTAAGAGTAAGACAATTACATAAAGAATGAAAACTT
ACACAAAATTAAGCTGTGGTGTTACTGTATGCAGCTAACTTTTTCCCCTA
CATATTCTAATTGTACTCGAAATAGGCAGAAAGTTGGCTGTATAATATCA
ATGCTTTGTCCTCTTTTGATATCAATGAACTCTTTCAATGTGTTTACAAG
CAAACAAACTCAGGCATTTAAAGGATAGATTATCAATTTGTAGCCAACCA
ACAAATTTGTGATTTAATTTTAAAGAGAGAATTTTGATTTGTTAGGCCTC
ATTTACAGGCTAAAATCAATATCaacttgaaaataaatttgtctaTTGTG
AATTGGTCATGCATATGAAATCTAGGAATAGCTTATCCGGCATTGCTTGG
GTTGGATATTGTTATGTCATCTTGACAGTATAATTATTTTCTGTGAGTTT
GGTCTTGAAATTATAGTTTTCAAATTTGACATGGATCGGATCCTTTTATC
CAAGGCTTGTAAATTTTATCAGTGGGAAAATAATTATATACTGTAAATAT
AACTTGGGTATTTACACACTAAACTTCTTTACaattaaaagagaaaattc
agtttttttgatATTCCAGTTTACaaggttttgatttttgataaacactT
AAGTTTTCATGTTGGTGTTGCtatcaaatttggaaaatagtACTTATGAG
TATTTTTGCTATTAATGTTTTTTATCATGTGTTATCTTTGCATGGGAAAT
TTTTTCATTCTTGTCATTCAAGAATAAGTCCATTACTGATATTTTTTATG
GttaaatctcgaaaaaatgCTCTATTCTTTATTGAGTTTTATACGCCAAT
TTTTCATGTGCTTACTTTCTGCCTACCAAATTACAAATAACAGAATAAAA
ATAGTGGTACTAGATTTATTGATTGACATTTTATGCCACATGAACaagtc
aaaatctaaatttAGGATTGTTCCAATCCTTTGGGTTATGTTGAACTAGA
TTTGGACCTGTTCAAATACCTACTTTGGGTATTGGTGTACAATCAAAACT
CTTAGAATTTATAGTTTTTATTGGTATTTTTCAGGGAAATCAAACCAAAG
ACCTTTGCTGATTGTATAGGAAAAGGTATGTCACTTTATGATACAACTGC
TCGTAGACCAAACTTAAGTCCTTAGAGGTTTCCAATCAGTATTTATGTCC
TTGATTCTAAACATTAAAACAAGAAATTCCTTAAAATTTATCCATAATTA
TAGCTAATCTGTCCAGATTCACCATAGATTATTGTATCACTGTTTTAAGT
TAAACAATTAGCACTGATTTCGTGCTTCCTCTgcttcctgtctctaaaga
accAACGAATCAAACTTTATTCTTTTGCTTCATAGAATTACCAATTGGGT
GGGAAGAATGTCAAGACGACGTTATAGGAACTTATTTTACTGACCATAAT
GCTGGTAAGCTTTAATGATTTACTTTTTTATCCAACAAAAACGAGATAGT
CGATCAGTTAAATCTGCAAATAACAATCCCTTGATGAGTCAAGAAGTCTC
AAACTTTTTCATTGCATCACATTAACTAGCAGAAGCACTGACTGAAAAAT
TgcactttttgtttttaattgtcTACAAATTCCTTTGAAAAGTAATTAGA
TTGCAACTATTAGAAAACTTTATAtggaaacattttttaattgttcCAAA
ACTGCTATAAATCATGGTATTTTCACATGCATTTTTCTTTTAGATAATTG
GAATGCACTTTTTTTCTGGACATAACATATATTTGAAGGATCATTTATTT
TTTGGttcattgttttgaaattttgttatttCATTTCTTTGTAGAAAATA
ATCAGCTGGAGGATCCACGCCAACAATGGCACGAAGAACAGCAGATTATG
TTGGGTGATTATCTATTGCGCACTAAACTTGATATTGAGGTAAGTAGTTA
AAATACTCTCTCCAATATCAAACAACTCATAAAAAAGCATGGTAATGTGT
TATAATCATTTCTTGTTTATGAAGCATAGGAAGTTGTTAAGagtattttg
tgattttggtaTTCTCTTTTGTAAAATCTTCATTGCCACACCTCATCATT
CatcagtttttatttaatataaaaacatttgaagCCTTCCAATgttatta
actttttgagttttaaacctgaaaatgttaaatgttcttattttcaccat
tttctaagtatttttgtttaatttcttatTAAATTGAGTGTTTTGGAGTC
TTAGTTTTTCGCAAAgccttaacttgctcttaatattttagccattgAAG
CCGTTTGTTCTtttgtagtttgttcttataaaaaaacatgtaactgAAAT
CATAATCACTCTGGCTCAAAATATGTGTCCATGTTcagtaaattcatttt
ttcccaAACATCCAaactgtaatttttttccaaagtttACAAAACTGTTT
ACAAGGTGTGATTATTTGGTTTCTTTAAAGGAAATCTTTATTCAAAACAT
NTTTTCCAAAGTTTGCATAACTGTTTACAAGGTGTGATTATTTGGTTTCT
TTAAAGGAAATCTTTATTGAAAACAGATTGAAACTTTGTAtgtaaaaata
gcaaaaatataGTTAAGTAAGCTTTATTATACTATTAATAGGGACAAACA
GATTTTTCCGTTTTTAAATGACGAATTAAGATCGacatttttcatcaaac
ttttgattttctatGGTTTTCTTGGTCTTTGTCATTTTACAACATGCATA
CAATATTGCAACTACTGGTGCCAATGGAATTAGAAtgctaaagatttttt
ttaaacatgaaCTTTAATAAAGACTCctcttttttgaaataaaacatcAT
CTTAAAACACACTAAAAGACAACAAATAGGATATGATGATCCTTCAATAT
GTCATTGGCTTCTGATTCTATTGTGAAAGGGAATAGAATTTTAAATATGT
CATTATTAAAGTGAATCGTTAGCTGACTTCTGGAATGTGGGTTATTTTTC
TTGTGTGTGTGACGCACATTAATGGTGTTGGAGATTTTGAATCATATCTC
CTCTCTTTCTCTTAATGTAGCATCTGATAGCTTTGAGAAGTACAGTAAAC
AGCTACCTCTGTATTTAATTTTCACAAGGGagaagttttatttataagag
agTGAGAGATTTTTTTATGTAACTCTCAATTTGTGTCTGGATTATAacca
tgaattatttttttatgacatCCTTATCATCTATCGATGAGGAATTTTTG
TGATTCTTAAAACTGACATGATTGTTTAAAATGCTGTTGTTTTTTATGCT
TTTCAGGCTCAACAAAACTTAGTTAATGTTAAACAACGACGCTTGCGATT
GGCACAAAATAAGGTagtgtaaaaatatttcagcattttttattaagaaa
agttatattttagTGATGTCATTCAAATAAGAGATATAATGTGACATTTT
TGAACagttatgaatttcttttcttttcctctgCACAGTTGAGTAGGGTA
ATGTAATATCCCCTACAAAAAAGTTAATATCATAATTGAAGGGTTTTGAG
TGATTTGCGTCGATATAAGGAATCACGAGCACTTGTCCAAAATATGGTGA
TCTTTTAAAGGACTTCTTTACTTTACTGATGAGAGAGGAATTTAGTGTGT
AGGTTGAAATTACTTTGTTTATTTTAGATACGGTAATACTTTAAGAGTTT
TGATAAATGATCTGTGAAAATCACTATCAGTTTTTGTTATGAAAGAATGC
AGAGACTTAAGCAATACCCTCTTAATCGATAATACCGTCGTGTGTTTGAC
TGTTTCATGAAGTATAGTCTCAAGTAACTTCTCATTAATTTTCTCATGGA
AGATTTCATTCTAAAAAGGATAACAATATGGTACttgttgtttttaaaat
tcaccttattcttttgttgttgttttagtttggttttttttatgaaattc
tgttttttaatattttgatctTCTTTGTAGGTCGATTATCTGGAAGGATT
AGAGCGACAACATTTCGAAACGAATTCCAGTCAAATGTCTCCAGCAAAAG
CCCGTTATGATTCACATCAACTCAAGTTTGACATTGCAAATGCCAGGGAA
AGGGTAAGTGGGCTACTCTAATCATTACGTAATGAAAGCTCACTTTCTTA
ATTTTGTTTCTTCGAATTTATTGCTTTTTAGTTAACCCTGAAATCATTTA
TAAACGCTTTTGGTATTATGATAGATGCGTAAGGTTCTCATAAGAGTGTA
TCTGGTAGAgatttgttgtctttttatATCAAGCTCAATCAACTGAAATG
AGGTTTTATTATCATCACATTTGTAACCCTATTTTCTGTATCCATTACAT
ATCTTCTCGCATGTGGTGAATTTTTGTGAATTCTTCTTGGCATCGTGCGT
CGgaacaaatattttctttaaaacaaaaaaaaataattgaaaagtGATGC
ATCGATTCTTTCAAATGATTCATCTACGAATCTTGTTAAACTCCCCTTCC
TTTCTGTGCCAACTATATATCGAAATATCGTCATCTTTGTGTGTTTGTGT
TTACGTCTAATTTCAGTAATTTTGTTCAAGCAATATATAATAAGTTGATG
ACGTTTATCATTTTTGTACATCAGAATAGTGATTCTATaccatttcatta
tttttacatcggtTCGTCGACTTAGCTCATAATTCTAGACTCGATACAGT
ATCCTTGCTATTTCATAGAAGATAAAAATCGTGCGCATCTCATAAAGTTg
cataaaaaagaaacactAAAGAGTTTTGTTTAACAAACCTGTAGACCCTA
TATGATATAGGTTAACAAAGGGAGTATGCAATTATTGTATTGGCAAATAT
ATAtatttccgataccgatttaATTCCCGAATCTCCCTGCAAGGAAACAG
CGGATCGAGAGGAGGTTTAAAACCACGGCGTCTCGCTTGAGGTTATCTAT
AGACTATATTCTACATTTTATTTGCTCATATTCAAATAACTGTTTCTCTG
TTTACAGGTTGGCAActtgaaaaaagaattacaCAATGTATCCGATGAGG
TGCGCCACCAACAAGAAGGACACGACAGACTGGAGAAAATTAACGAGACA
CTTTCAAGCAACGGCCCCTACCAAGTGGACACGGCCCGCGAAAAAGTGAC
AGTAATGAACGATGTTCGCGAACAACTTTTACTCGGTGAACAAGAGAAAA
TCCACATACTTCAAGATTTGTTACGACAACGTGACGAATACCGTTCTGAT
ATAGCTGGCTATAATCAGGTTAGTGTACGCACGTCTCTTATAAAAATACC
CTCTAATTTAACACTATAGAGTATTCTTTAAGGCCTTAAAAACAATTAAA
GCATAGGGTAAAATGATGAAGGAAACTGAGAAAATCGAGCCCCTaatcaa
atgttcttaaccatTAAAAGCTCAAGACcttctgttcttatatagtttgt
tctaacATAAACCTGCAGTGCAATAAGCCCccttttctacttttttgttt
CCATGACAACTACGTACATATACAGATCATAATACTCGTATACAGCTCAT
TAGCTGTCGGGTAGGGGGTATTGATTAAAAAACCTTTATTGAAAAGCTAA
ATTGAGTACGTGTCTTGcaaggaattttgaaattgaaagagACATAATTG
TGTTTCgtttaaaaattctcttttgttATTTTAAGTTGAAAGTCTTTAGG
CTAATGAGGAAAGTACGGTGTAGAAATAATTTTGTAACCTGAAACTTTTA
ATGACTTTCGTTACAAATTTTGCAGAGCCTTTGTACACGCTTCTGGAATT
CCATAAAATccttcaaaaatattatctCATCTGTGTTATCGTTAGCTATT
TTTTTAGCGTGTTTCGAATATTTGTTGTGCCTTTTCTCTTTTGACTGAAA
TTTCATAATGTCAAAAACACTTTTAGAAAACTGACCTCAAGTATTTTTGA
CGCGATTTGAATTTTGATACGGACTCTATTTTTGTATATACGAGGGTGGT
GGCGTTGGACGAAATAGCTCAAATAGCAACGGGGTTTTGAAGCTCTTTTA
TATCattatttgttttttctgaaatcaaaaaaagaatgttgaaattacat
aaaaaacgttaacaaaataatttaccAAAAGATTATATTTCATATCTCAA
TCATAAACACCCAAAGCCTGCGATGAAATCTCTACTCAATTCGTGAAAAA
TGTGCTTGTTATTTGCTTTATCCTGCTATATTGACACACAGATCATATCA
TTAGTACAACCTTTCTCTGAAATTCTCTGCATTCTTTTTGCAACACGAAA
AATAGAACAACAAAATAACTCTTTTGAATTCCCACATCATTGTTATTCTT
TTGGAGATGCCTATACAAAAAACCCcatacaaaaatacaatttttaagGG
ATAAAAGTGAAGCACCAAGAGATGTTATTTTAAGAGATACTTGTCATTCT
CCATGCATCAACATACCGTGGGAATGCCATCATGTAATTTTCCCTTTAAT
GACGCAAAGTCAACATTGTTCTAATTCCTTTTGATAATGCTCTCCTAAAC
ACTCCTCCTTTTTATCCATTTCACGCCACCGTCACTTTCTCGATTTTCCT
CAGCACCCTTTACACACCGATGAAATATTCGAGctggaaaatttaaattt
tcccAAGTTTCTTACTTTTTTTGTATGGCAAGCAAGTTCCTGGATATGGT
TAGTCCTAAAATATATCTAAATAGGCGTACTGATGTCTGTCGTAAAAATA
CATTTTGCTCTTTAATTAGAAGAACCAGGTTAGCAAAAGCTAAATAAATG
CCTACAATATAAAATAGGATAAAACCTTCCCAATATCTGATCGATTACTT
TTACAACAAACTATGCTTTATTGCTTGTTTTCCTGTTTATACTTTGACAG
TACATCATAGTAAgtacatttcaatttttctatctTATTTTACAGAAGGC
AGGATCATGCACAAGTTTAAACAGTACTGGAAGTAACGGACAACTCTCCA
TGAACGGTAGCGAAGAAAACGTCAACACTAATAAACGTCAACTGCGTAAA
GACTATCAACTCGCCTTACACCGTGTACAAAAACTTCAAGCTGGCCTTGA
ACTTTTGAATCACCACTTAAGGAACACGCAGAACGGACCTGAACAACATC
GTTTAGCATTATACAACGAGAAACAACAACTTTTTACTGAACTCCAGCGC
TGTGACGAATACATTAAAACCGAAGAGGCACGAATGCATCTTGAAAGCGA
GAAAGATTTATTAAGTAACGAACTAATCTCAATGAGAGACGTCTCCACGA
AAGTCATCGAAGATCGCAACAGATTAGAAAATGATCGTAAGATCTTGGAA
ACGCATTTGGCCGAGAAAACCCGACAAACCAATCTACTGGAAATGAAACT
AAAAAGGTAAGCCGACGGACTTCTTTTTACAGCGTCTCTTGATCTAATTC
TTGTTGTCGCGCATAATACACGTATGAGGACACACTGTTCTTATGTCAAA
ATCACTCGCAATAATTGTCTCTTCCTTTTTTAGTTTATCCACCAGCACTT
TATCCGTCTCCTCTACTTCAAGCCGTGGTTCGCTCTCAACTGGTAGCCGT
GGCTCACTATCCGCTTCAAGTCGTGGCTCACTAAATTCACTCGGACTTTA
CGGCTCGGATATGACGAATGGTGTAGATCACTATTCGAGTGGACTGTGTC
ATGCGCCCTCGACCGCCTGTCCGCCCATTTACGAGCAGAGTATATATTCA
TCTAGGGGCGAGACGACAGAAGGACTTTCTATGACGTATGACCAACAAAA
TGGCCATCAATCAATGTCTAATTCTCGTGTTTCTTTAACTTCTATTTCAC
CGCCCATTTCTCCTCTTACCGCGCCCATTAGTTATACAGATGTCGCAAAC
CTAAGACGCCCTATACACCCTGCTGGCTCGAATGAACGACTACATAAAAG
TGTAAGTCAAaatctcaaatatttttcttactgGAAAGTGTAACAACTAT
CTTTTATATTGGGTTTTTCGTGGGCCGAAAATTTCAAAGGCAATGGTTTG
TAAACCCTAATTAAGAAATTGTTTTAGcttgtttgttttcttttgttttt
aggcTGAAGACGGACTGAACCATTATTCGAACCCAGTAAACCAATACCAA
TTCATGATGGGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029692XLOC_029692Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046517-exon-scaffold_113-1491911889:497959..498308TCONS_00046517-exon-scaffold_113-1491911889:497959..498308Clytia hemisphaericaexon
TCONS_00046517-exon-scaffold_113-1510915933:497959..498308TCONS_00046517-exon-scaffold_113-1510915933:497959..498308Clytia hemisphaericaexon
TCONS_00046517-exon-scaffold_113-1575043694:497959..498308TCONS_00046517-exon-scaffold_113-1575043694:497959..498308Clytia hemisphaericaexon
TCONS_00046517-exon-scaffold_113-1491911889:501693..501733TCONS_00046517-exon-scaffold_113-1491911889:501693..501733Clytia hemisphaericaexon
TCONS_00046517-exon-scaffold_113-1510915933:501693..501733TCONS_00046517-exon-scaffold_113-1510915933:501693..501733Clytia hemisphaericaexon
TCONS_00046517-exon-scaffold_113-1575043694:501693..501733TCONS_00046517-exon-scaffold_113-1575043694:501693..501733Clytia hemisphaericaexon
TCONS_00046517-exon-scaffold_113-1491911889:501994..502062TCONS_00046517-exon-scaffold_113-1491911889:501994..502062Clytia hemisphaericaexon
TCONS_00046517-exon-scaffold_113-1510915933:501994..502062TCONS_00046517-exon-scaffold_113-1510915933:501994..502062Clytia hemisphaericaexon
TCONS_00046517-exon-scaffold_113-1575043694:501994..502062TCONS_00046517-exon-scaffold_113-1575043694:501994..502062Clytia hemisphaericaexon
TCONS_00046517-exon-scaffold_113-1491911889:502453..502547TCONS_00046517-exon-scaffold_113-1491911889:502453..502547Clytia hemisphaericaexon
TCONS_00046517-exon-scaffold_113-1510915933:502453..502547TCONS_00046517-exon-scaffold_113-1510915933:502453..502547Clytia hemisphaericaexon
TCONS_00046517-exon-scaffold_113-1575043694:502453..502547TCONS_00046517-exon-scaffold_113-1575043694:502453..502547Clytia hemisphaericaexon
TCONS_00046517-exon-scaffold_113-1491911889:503915..503971TCONS_00046517-exon-scaffold_113-1491911889:503915..503971Clytia hemisphaericaexon
TCONS_00046517-exon-scaffold_113-1510915933:503915..503971TCONS_00046517-exon-scaffold_113-1510915933:503915..503971Clytia hemisphaericaexon
TCONS_00046517-exon-scaffold_113-1575043694:503915..503971TCONS_00046517-exon-scaffold_113-1575043694:503915..503971Clytia hemisphaericaexon
TCONS_00046517-exon-scaffold_113-1491911889:504589..504711TCONS_00046517-exon-scaffold_113-1491911889:504589..504711Clytia hemisphaericaexon
TCONS_00046517-exon-scaffold_113-1510915933:504589..504711TCONS_00046517-exon-scaffold_113-1510915933:504589..504711Clytia hemisphaericaexon
TCONS_00046517-exon-scaffold_113-1575043694:504589..504711TCONS_00046517-exon-scaffold_113-1575043694:504589..504711Clytia hemisphaericaexon
TCONS_00046517-exon-scaffold_113-1491911889:505616..505876TCONS_00046517-exon-scaffold_113-1491911889:505616..505876Clytia hemisphaericaexon
TCONS_00046517-exon-scaffold_113-1510915933:505616..505876TCONS_00046517-exon-scaffold_113-1510915933:505616..505876Clytia hemisphaericaexon
TCONS_00046517-exon-scaffold_113-1575043694:505616..505876TCONS_00046517-exon-scaffold_113-1575043694:505616..505876Clytia hemisphaericaexon
TCONS_00046517-exon-scaffold_113-1491911889:507554..508014TCONS_00046517-exon-scaffold_113-1491911889:507554..508014Clytia hemisphaericaexon
TCONS_00046517-exon-scaffold_113-1510915933:507554..508014TCONS_00046517-exon-scaffold_113-1510915933:507554..508014Clytia hemisphaericaexon
TCONS_00046517-exon-scaffold_113-1575043694:507554..508014TCONS_00046517-exon-scaffold_113-1575043694:507554..508014Clytia hemisphaericaexon
TCONS_00046517-exon-scaffold_113-1491911889:508142..508559TCONS_00046517-exon-scaffold_113-1491911889:508142..508559Clytia hemisphaericaexon
TCONS_00046517-exon-scaffold_113-1510915933:508142..508559TCONS_00046517-exon-scaffold_113-1510915933:508142..508559Clytia hemisphaericaexon
TCONS_00046517-exon-scaffold_113-1575043694:508142..508559TCONS_00046517-exon-scaffold_113-1575043694:508142..508559Clytia hemisphaericaexon
TCONS_00046517-exon-scaffold_113-1491911889:508711..508772TCONS_00046517-exon-scaffold_113-1491911889:508711..508772Clytia hemisphaericaexon
TCONS_00046517-exon-scaffold_113-1510915933:508711..508772TCONS_00046517-exon-scaffold_113-1510915933:508711..508772Clytia hemisphaericaexon
TCONS_00046517-exon-scaffold_113-1575043694:508711..508772TCONS_00046517-exon-scaffold_113-1575043694:508711..508772Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_113supercontigscaffold_113:497959..508772 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.583574	0.330216	4.79135	4.98555	2.66531	3.25198	0	0	6.55175e-08	0	0	0	0	0	0	0	0	0	0	0	0	0	0.824764	0.976759	0	0	0	0
Blast
[Close]
BLAST of TCONS_00046517 vs. Swiss-Prot (Human)
Match: WWC2 (Protein WWC2 OS=Homo sapiens GN=WWC2 PE=1 SV=2)

HSP 1 Score: 231.491 bits (589), Expect = 2.492e-64
Identity = 151/430 (35.12%), Postives = 236/430 (54.88%), Query Frame = 1 
Query:  217 MPRPRNGVIPKPLPAGWEEAKTNEGKFYYIDHNSQKTSWIDPRDREIKPKTFADCIGKELPIGWEECQDDVIGTYFTDHNAENNQLEDPRQQWHEEQQIMLGDYLLRTKLDIEAQQNLVNVKQRRLRLAQNKVDYLEGL--ERQHFETNSSQMSPAKARYDSHQLKFDIANARERVGNLKKELHNVSDEVRHQQEGHDRLEKINETLSSN-GPYQVDTAREKVTVMNDVREQLLLGEQEKIHILQDLLRQRDEYRSDI-AGYNQKAGSCTSLNS--------TGSNGQLSMNG-----SEENVNTNKRQLRKDYQLALHRVQKLQAGLELLNHHLRNTQNGPEQHRLALYNEKQQLFTELQRCDEYIKTEEARMHLESEKDLLSNELISMRDVSTKVIEDRNRLENDRKILETHLAEKTRQTNLLEMKLK 1455
            MPR R G    PLP GWEEA+  +GK +YIDHN+++TSWIDPRDR  KP +FADC+G ELP GWE   D  IG Y+ DH  +  Q+EDPR+QW  EQ+ ML DYL   +  +  Q+ L +VK++RL LA ++   L     E+    T+    S +  +YD   LK +I+  R RV  LK+EL  +  E+ ++++G + L++I++ +S     Y++  A+  +T +  +R+ +  GE+EK  ++Q L + ++ +  D   G ++    C+ +NS          +  Q S++G     S  N+   K +L   Y+ A   +  L+  L  L+          E+ +L L NEK++L  ELQ      +T++    LE+E+  L  EL+S+R   ++ + +R RLE  RK L   L E T+ T  L  +LK
Sbjct:    1 MPR-RAGSGQLPLPRGWEEARDYDGKVFYIDHNTRRTSWIDPRDRLTKPLSFADCVGDELPWGWEAGFDPQIGVYYIDHINKTTQIEDPRKQWRGEQEKMLKDYLSVAQDALRTQKELYHVKEQRLALALDEYVRLNDAYKEKSSSHTSLFSGSSSSTKYDPDILKAEISTTRLRVKKLKRELSQMKQELLYKEQGFETLQQIDKKMSGGQSGYELSEAKAILTELKSIRKAISSGEKEKQDLMQSLAKLQERFHLDQNIGRSEPDLRCSPVNSHLCLSRQTLDAGSQTSISGDIGVRSRSNL-AEKVRLSLQYEEAKRSMANLKIELSKLDSEAWPGALDIEKEKLMLINEKEELLKELQFVTPQKRTQDELERLEAERQRLEEELLSVRGTPSRALAERLRLEERRKELLQKLEETTKLTTYLHSQLK 428
The following BLAST results are available for this feature:
BLAST of TCONS_00046517 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WWC22.492e-6435.12Protein WWC2 OS=Homo sapiens GN=WWC2 PE=1 SV=2[more]
back to top