|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046520 ID=TCONS_00046520|Name=TCONS_00046520|organism=Clytia hemisphaerica|type=transcript|length=3693bpRun BLAST on NCBI protein sequence of TCONS_00046520-protein >TCONS_00046520-protein ID=TCONS_00046520-protein|Name=TCONS_00046520-protein|organism=Clytia hemisphaerica|type=polypeptide|length=507bp MISEYVQDTLGPYIQNKMKEIESCSASHCNNEGHCIDRSLLTTPIVKAYERun BLAST on NCBI transcript from alignment at scaffold_113:39334..80121- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00046520 ID=TCONS_00046520|Name=TCONS_00046520|organism=Clytia hemisphaerica|type=transcript|length=40788bp|location=Sequence derived from alignment at scaffold_113:39334..80121- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_113:39334..80121- >TCONS_00046520 ID=TCONS_00046520|Name=TCONS_00046520|organism=Clytia hemisphaerica|type=CDS|length=7620bp|location=Sequence derived from alignment at scaffold_113:39334..80121- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00046520 vs. Swiss-Prot (Human)
Match: HYAL1 (Hyaluronidase-1 OS=Homo sapiens GN=HYAL1 PE=1 SV=2) HSP 1 Score: 186.422 bits (472), Expect = 2.888e-50 Identity = 98/241 (40.66%), Postives = 143/241 (59.34%), Query Frame = 1
Query: 583 KPFVALWNSPTIGCDFNFSTPIDLAHHGIYENYRQTWDGNRVSVFAGAQLGLYPYFSEDGSQVYNGGLPQLINLQQHLQKARMDIERKIPDPNFNGLAVIDWEPWRPLWETNWNKKRIYKVRSVENVRQKYPNWPLESLITQAKREFETAGRSMFESTINLGKQLRPKALWGFYGFPDCYS----KKENRYQCSPEVRSRNDKLDWLYEASTALFPSMYL---LEEHPDNRDYVLGRLRET 1284
+PF +WN+ T C +D++ + N QT+ G +++F +QLG YPY++ G V+ GGLPQ +L HL + DI IP P+F+GLAVIDWE WRP W NW+ K IY+ RS V+ ++P+WP + A+ +F+ A R+ T+ LG+ LRP+ LWGFYGFPDCY+ QC +R++ND+L WL+ S AL+PS+Y+ LE ++ YV R+ E
Sbjct: 30 RPFTTVWNANTQWCLERHGVDVDVSVFDVVANPGQTFRGPDMTIFYSSQLGTYPYYTPTGEPVF-GGLPQNASLIAHLARTFQDILAAIPAPDFSGLAVIDWEAWRPRWAFNWDTKDIYRQRSRALVQAQHPDWPAPQVEAVAQDQFQGAARAWMAGTLQLGRALRPRGLWGFYGFPDCYNYDFLSPNYTGQCPSGIRAQNDQLGWLWGQSRALYPSIYMPAVLEGTGKSQMYVQHRVAEA 269 The following BLAST results are available for this feature:
BLAST of TCONS_00046520 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.