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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046525 ID=TCONS_00046525|Name=TCONS_00046525|organism=Clytia hemisphaerica|type=transcript|length=4714bpRun BLAST on NCBI protein sequence of TCONS_00046525-protein >TCONS_00046525-protein ID=TCONS_00046525-protein|Name=TCONS_00046525-protein|organism=Clytia hemisphaerica|type=polypeptide|length=535bp MTPEDNLADICLDNVLEELGKSNIENKEVLSKVLENPKFQKLLQIHTTLHRun BLAST on NCBI transcript from alignment at scaffold_113:156667..181950- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00046525 ID=TCONS_00046525|Name=TCONS_00046525|organism=Clytia hemisphaerica|type=transcript|length=25284bp|location=Sequence derived from alignment at scaffold_113:156667..181950- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_113:156667..181950- >TCONS_00046525 ID=TCONS_00046525|Name=TCONS_00046525|organism=Clytia hemisphaerica|type=CDS|length=28944bp|location=Sequence derived from alignment at scaffold_113:156667..181950- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00046525 vs. Swiss-Prot (Human)
Match: MPP2 (MAGUK p55 subfamily member 2 OS=Homo sapiens GN=MPP2 PE=1 SV=3) HSP 1 Score: 363.999 bits (933), Expect = 3.549e-110 Identity = 194/511 (37.96%), Postives = 307/511 (60.08%), Query Frame = 3
Query: 312 KLLQIHTTLHEPLTHDKKDQYVALCIEIASELKKF-EEDNKCDELSQIMLKPHFRSLIEAYESITHETYREDNFLPSEDEINKGPPV-----RVVGLSKNDKEPLGISLGKHKDGCIFIQRILRGTLVDRQGLFNVGDIIKEINGEPVGTDPDEVLQQMQSNGGGVTVKCIPAFKDSRTSKCQVHMRCHFEYSPNEDKDFPKGETGLSFQPCDILEIIDQTDSDWWQAKHIDESKTGIIPSLKLEQTRKA-----ANLIPKNKQNXXXXXXXXXXXXXXVYQTCKNSIFDCFDVRLYEEVAKMPAIENKVIAFVGTQGLGKKSVITRLLSNYADRYVSVVPDTSREPREDEEQKKGYNFMNKEEMHKDILAGKYYEWGEDKGNYYGSKLSSIRDIINSGKIALVDCEASALKFLRTAEFMPFIVFFNAPDMQTLQKYNQQS-NSKVSTRE----ELDRIIEESADISETYHHYFDKTIEGGNAEQSYNTLREVIEARSNMTHQWVPISWVY 1796
K H L E +D + L EI +L E+ + EL+ I+ +PHF+SL+E ++S+ +TY P D PV R+VG+ K E LG++ + + G + I RIL G +V +QGL +VGDIIKE+NG+PVG+DP + + +++ G V +K +P++++ + QV ++CHF+Y P D P E GL F D+L+I++Q D++WWQA H++ G+IPS LE+ RKA L P + + G K KK+++Y T KN+ FD ++ +YEEVA+MP K + +G QG+G++S+ +L+ DRY + VP TSR P++ E + +GY+F+++ EM D+ AG+Y E GE +GN YG+++ SIR ++ +GK+ ++D A+K LRTAEF+P++VF APD +TL+ N+ + S +ST++ +L R +EES+ I Y HYFD + N E+++ L+ +E + QWVP+SWVY
Sbjct: 71 KYFGAHERLEETKLEAVRDNNLELVQEILRDLAHVAEQSSTAAELAHILQEPHFQSLLETHDSVASKTYETPPPSPGLDPTFSNQPVPPDAVRMVGIRKTAGEHLGVTF-RVEGGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPVGSDPRALQELLRNASGSVILKILPSYQEPHLPR-QVFVKCHFDYDPARDSLIPCKEAGLRFNAGDLLQIVNQDDANWWQACHVEGGSAGLIPSQLLEEKRKAFVKRDLELTPNS--GTLCGSLSGKKKKRMMYLTTKNAEFDRHELLIYEEVARMPPFRRKTLVLIGAQGVGRRSLKNKLIMWDPDRYGTTVPYTSRRPKDSEREGQGYSFVSRGEMEADVRAGRYLEHGEYEGNLYGTRIDSIRGVVAAGKVCVLDVNPQAVKVLRTAEFVPYVVFIEAPDFETLRAMNRAALESGISTKQLTEADLRRTVEESSRIQRGYGHYFDLCLVNSNLERTFRELQTAME-KLRTEPQWVPVSWVY 576 The following BLAST results are available for this feature:
BLAST of TCONS_00046525 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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