|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046531 ID=TCONS_00046531|Name=TCONS_00046531|organism=Clytia hemisphaerica|type=transcript|length=3495bpRun BLAST on NCBI protein sequence of TCONS_00046531-protein >TCONS_00046531-protein ID=TCONS_00046531-protein|Name=TCONS_00046531-protein|organism=Clytia hemisphaerica|type=polypeptide|length=400bp KRSPKVMAACRNRFSKKILVALGVLVILCVGCPFFAFLNVGSPDDSPLASRun BLAST on NCBI transcript from alignment at scaffold_113:221654..236301- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00046531 ID=TCONS_00046531|Name=TCONS_00046531|organism=Clytia hemisphaerica|type=transcript|length=14648bp|location=Sequence derived from alignment at scaffold_113:221654..236301- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_113:221654..236301- >TCONS_00046531 ID=TCONS_00046531|Name=TCONS_00046531|organism=Clytia hemisphaerica|type=CDS|length=6015bp|location=Sequence derived from alignment at scaffold_113:221654..236301- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00046531 vs. Swiss-Prot (Human)
Match: HEXB (Beta-hexosaminidase subunit beta OS=Homo sapiens GN=HEXB PE=1 SV=3) HSP 1 Score: 134.035 bits (336), Expect = 7.376e-58 Identity = 71/160 (44.38%), Postives = 96/160 (60.00%), Query Frame = 2
Query: 662 IKATNFFGARHALETLSQLSAYDDESNGLQIISSADITDKPSYPYRGLLLDTSRNYFSVANIKRLIKALSFNKMNTLHWHITDTHSFPIEIKSVPELQQYGAYDHNKVYSQSDVREIMEYASYHGVRVLPEFDEPAHCGEGWQYGEKAGLGKLAVCVNRE 1141
+KA +GA LET SQL Y D S G I+ + I D P + +RG+L+DTSR+Y V I + + A++FNK N LHWHI D SFP + + PEL G+Y + VY+ +DVR ++EYA G+RVLPEFD P H W G+K L C +R+
Sbjct: 160 LKANRVWGALRGLETFSQL-VYQD-SYGTFTINESTIIDSPRFSHRGILIDTSRHYLPVKIILKTLDAMAFNKFNVLHWHIVDDQSFPYQSITFPELSNKGSYSLSHVYTPNDVRMVIEYARLRGIRVLPEFDTPGHT-LSWGKGQK---DLLTPCYSRQ 313 HSP 2 Score: 110.923 bits (276), Expect = 7.376e-58 Identity = 79/266 (29.70%), Postives = 122/266 (45.86%), Query Frame = 3
Query: 1239 GQLNPTNDNVYDVLGKIYKEYFDMFDPDLFHAGGDEINFNCWNSTQEIADWLVQNYGGRSEEDIMKMWGMFLEKSSNKIYEANNGKEIPLILWTSGMTNNKNYLTKYMDPKRHIIQLWTGST-DSHIANIVNSGFKTIFSTYDTLYLD-CGYGNWLVKGNNWCSPYKDWKLLYENDPVKILQTFNITVTDAIRKSLLGQEAAMWSEQVDEHASEGKIWPRTAALAERLWTNPD-HGWRDAEYRLIFHRERLVNRGVQADALQPLWC 2027
G +NPT + Y L +KE ++F H GGDE+ F CW S +I D++ Q G D K+ +++K + I N G I+W + ++K L I+++W S ++ + SGF I S YLD YG +DW+ Y+ +P+ + T ++ +G EA +W E VD ++WPR +A+ ERLW++ D DA RL HR R+V RG+ A L +C
Sbjct: 320 GPINPTLNTTYSFLTTFFKEISEVFPDQFIHLGGDEVEFKCWESNPKIQDFMRQKGFG---TDFKKLESFYIQKVLDIIATINKGS----IVWQE-VFDDKAKLA-----PGTIVEVWKDSAYPEELSRVTASGFPVILSA--PWYLDLISYG-------------QDWRKYYKVEPL------DFGGTQKQKQLFIGGEACLWGEYVDATNLTPRLWPRASAVGERLWSSKDVRDMDDAYDRLTRHRCRMVERGIAAQPLYAGYC 551 The following BLAST results are available for this feature:
BLAST of TCONS_00046531 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.