TCONS_00046533 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046533
Unique NameTCONS_00046533
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1577

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046533 ID=TCONS_00046533|Name=TCONS_00046533|organism=Clytia hemisphaerica|type=transcript|length=1577bp
tagctttcataaaaaatgatcttaaagaaattaaaaatgaaaacgaaATG
ATGAGAACGAGCTTGTTGACCAGTTGATGAAAttgtaatgacgtcatcaa
cagTTCGTTGCCGATCAGTGCTCTTGTTGCAAAAAGAATTGTTCAAAATA
AACCAATCAAAAGTATGGGGTATCGAAGTTGAACCAATGAAATGCGAGGA
CGATGATGGCGAAGAGGATGTTTTTCGTTGGAATGTTCTTCTTTCTGGGT
TGAAAAAGACACCATGGAAAGGTGGTCGATTCAAGATCGTAatggaattt
gataaagatttCGATGCCATTCCTCCGCGTATTTCGTTCGCTCGACCCAT
TCCCCAACATCCTAATGttTCCACAACTGACGGGCAAGTTTGCCTTGGTT
GTTTGGAAGAATGGAAACCAAACACTTCACTAGCCTCTGTACTCATCTCT
ATCCAACAATTACTATCAGAGCCTTGGTTTGAAAAAGCCTGGAACGAGGA
TGCAGTTCATATTGCCATGGAAACACCTAAGCAATACAAACAAATGGTTT
TGGATAATGTGATGAATAGTAAACGTGGAGTGGTTGTAAAGGACCCAACA
CCTGCTGCAGCAGAGAAGGAAACCTCACCGAAACACAAAACCATCACTTT
CAAAGAAATCTCCTCGCCTACACTTCCCGCAAATAAGAAAAGTTCGGAAA
GGCTATCTTATGAGAGTTATTTGTACGATTGGAGGAGCTTGGGGACAACA
CATGATGAAATTGATGCCAATACTGTCACGAAAGAATTGAACAAAAAGTT
AGACATGTCCGAGGGATCTCTCCAAGAATCAATGAGTGAAACGATTTTCC
AACAACTTTCCGATCACCTATCTTTCCCATAGAATCAATGAGTGAAACGA
TTTTCCAACAACTTTCCGATCACCGCAAAATAACATACGGTAGTTTCAAT
TCCACAACGGAAGATGAAAAAGCAGTCAAACGTGCTCAGTTATTGAAAGA
CAACAAAATCAAGTTGTTGAAAGATCTACATTCCAACAAGAAAGGAATCA
AAAGTTTGAGAGTGTCGTTACCAACATCGCCGGCAAACAGTCCTGTAGAA
GACTTGTTCGACGAATCAAACCAAGTTACTGAATCACCCAATGAAATTGA
AGCACAACAATTGTTGGAGTGGAGTCAAAAGCTCCCTGAGAAGCATACCT
TATGAATGGTGTAAGAAGGTGAGGTAAAATTTTTATTCAGTCAACAAAGG
TATGTTATTTCATTAACTGTCcaaggcttttccagaaaagacACTTTATA
CCCCTTTTAAGGGTATTGattatttaaaacaatagaGTACTTCAAAAATA
TCCTCAGGCCATTGAATCCAGCTGGATATTCACTTTCTCGTAGCCCCTGG
TTTCCTGATAATAGTAATTTTGGTTAAAAGGATTTGCTGGAAAGCCTATT
TTCATCCAGATAATTTATtcatttaatattttattttcaatttgttattt
tgttaattCTATGGGATGTTTTTTTAACTTCGAGGTTTTTTAAATTATAG
ATTGTaaatttcagtattttagtgGTT
Run BLAST on NCBI

transcript from alignment at scaffold_113:238821..261258-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046533 ID=TCONS_00046533|Name=TCONS_00046533|organism=Clytia hemisphaerica|type=transcript|length=22438bp|location=Sequence derived from alignment at scaffold_113:238821..261258- (Clytia hemisphaerica)
TAGCTTTCATAAAAAATGATCTTAAAGAAATTAAAAATGAAAACGAAATG
ATGAGAACGAGCTTGTTGACCAGTTGATGAAATTGTAATGACGTCATCAA
CAGTTCGTTGCCGATCAGTGCTCTTGTTGCAAAAAGAATTGTTCAAAATA
AACCAATCAAAAGTATGGGTAAGTAACATCCAAGACATTATGTCGATACT
ACAATCAAGATCAAAATATATTGAGAATTCCGGTTATTTTAACGTTTTTC
AAGATTTAAAGTTCCGGCGAGAAAGTCGATTTTGGGTTATCTCTTTAATT
TAATCGAATATTTCAATTTGGGATGGGTTGGCAAACTTCCAGGCTATTTT
CTGAGCCTTATTGGACTATTTTTGAGCTTTTGGATCCTCAGATCCTAAGG
TCTTAAGTCCTAAGTCTAGCGTTAAAACTCAGAGTTAAAACTCTACGCTT
CGAACCTACTTTAGAGCACTTGCAAATCGATTGCGGTTTCAAAACTTCCT
GGGGAATTTCCTTTTTTTTCAAATATTATGACCTTGATTGTAGAACTATT
TAAGTAACGGTTTGGGATAAAAGCCTCTTGATTATCCTACTCCAGAAGAA
ATGTTCTGGAGTTATTATAAAATACTTCATTAATTGGTAATTTAAAGTAA
TAGAGATGACGCGTTCTTTAGAAAAAGTAACAAAATTGTTTTATTACAGG
CTAACGACCAACCAAATCAAAAAAGAGCTTGTAAAAACTCCAGATTGTCC
CCTCCAGAAACGGACAACGAAATAAGTACTTAGTTTATCAAGTTTTTGAA
TTAGATTCCATTGAACGGATCAAATGACAGTTATCAACCATTATCTTTAA
TTTAACCTTTAATTCGTTTATTTGTTTATTTAAAGAGCGATATCGTTTGC
TTTACTCATCAATTTTAATTCACAAGCTTTTTGGTCAGCCTAAGCTGAGC
ATTCAAATAGGTAAAATTTTCCAGTTCCATCATCATAAGACGGCAAAAAA
AAAATCCGATTTCCCGATCGATCTCNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTTCCTGTTGAAATGTTAT
AAATATGAACTACGTTTTGCAAAGATTTTGATGCAAATTGTGTTTTTCTG
GAGTTTGCGCTTTGTGACTTAAAGTTTGTACCTTGTTAGTTTAATGTGTT
ATTGGAGTTTTATCAAGTAAAACAAAAAGTACAGTTTCTATGTATATTTG
ATGGATATCTTTATTTTGGTTCTGACGTTTTGGCAATTTTCTAATTTATT
TCTAGATAACACTTTGGTCAGATATGGATATTGTCTACACCCAACAGAAA
CAAGACGACTTAAAGTCGAAAATTTCGCATAATATTAGAACATCAACGAC
GAAGACGTGAAGCATTATGGATTTTGAATTAAGCGTTACACAAAATATAC
ACATTGTATTGTACACACAGGTCGTAGATACCCTGTTTTCTTATTTCTCA
ATCCAATAAAAACAAAAAGATAAAATTAAAAAATGCGACTAAAAAATTCC
TTTTTATAAGCGTTAAAAAGATCTTTTATATTCAGAATAAATCAGAGAAC
TGCAATATACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNATGTTGTGTAAAATTAACTCTTTTTGTACTATTTACTGAGC
ATTATCAATTTATTGGTGCATTCACTAACTACACAAACATAAAATAATTA
GTAGTAAACGAATAATAAACCTCTTTAAAACTCTACAAAAGACCAGAAAA
CATGATAGTTGATAAGAACTTATACAGCAGCAGCAATCACTTTTTGAAAA
AAGTTCTCATGATGAAGATGAATGTTTACAAAGGCCTGGTTACACGTCTT
GCACTAGAGTATTTTAATTATCAACTAAAGCGCTGTTTTTTTATCTTTGT
GAGTAAGTCCACCTTTAGAATATTGGCCGTAGTACGCCCGCAGCCAAACA
CCCACGCCATAATTTGCGCCCAAAAAATTTTCTCGCCACACAGAAAGACT
ATCGTAACACTTTCGCTATGCGAAATTAAAAATGTATCATAACTGACGGG
AATGAAATTAACAAAAAGTTTTAATTGCACTATGTTTCTCTTTTATTTTA
TAGTAATGAACTATAGCTTAATTGTTTGATGTCGTAGAAAACGTGCTACA
ATGCTAAAGAGAAGTATACTTTGATCTTCTCGTGGGGGGGGGAGGGGTTG
GAGGAGCTCTCAGGCTTGTTTTAAATAATTTTAAATCAAGTTATCAAATG
TTTCACATTTTGTACATTATTCAACATTTTTAGTCTACTCTGTTTCAGTA
CATCTCTTACATCTGTTAACCCACTTATTAAAGCTATCTAGCTAAGCTCT
ATTGGCTGACCTTCCAGCCTCGGCTGGTCTATTCACTTTGGATTGACACA
GATGTGGAACAAGATTGGTCAGAAAGAGGAAAAGAAAAACAGTTTTTTGC
TTATATCAGCATAATATAACTATAGGCAGACACTGTGCTGATATGAATTA
TGTGTCTGATATGAAACGGGAACACTTATGTAAAAATAAAACCTTTAACT
CATTCTTTTCTTCTGCAACAACAGGGTATCGAAGTTGAACCAATGAAATG
CGAGGACGATGATGGCGAAGAGGATGTTTTTCGTTGGAATGTTCTTCTTT
CTGGGTTGAAAAAGACACCATGGAAAGGTAGCTGTCCCTTATATTCGTTG
TTTTTCCTATCTTGAGGTCAACTATATTAGCCCTTTAAAAACTGCCGTTC
GTATTTTCCTATTTGCCACGGCAAAAAATGAAGGTTCGACCTATTTGCCA
GATATGTCGACATGAGCGACCACAGAGTTTACCATCACATTTAGCTTTAT
TTTCTGAAAAATATCAGAAATATAAGTGATATGTGTTTACTTTGAGTTGA
AAAGTGTATGATTATGAAAAACATCTTTGAAATATATTTTCATTATTCAA
TTGTGCTATTTAATGAAATCTAGTTCAAAATCGAACTTTCAATAAGCTTT
AAAAAAACCTCTGGCAAATAGGTCAAGATCTCTATTGTCGGCAAACGCCG
ACACCGGCAAAGAAATCGAAAATGCTCTTGTCGGCATATGCCGACAGCGG
CACGAAAAGGGTTGATAAGCTTAAGCTTGTTTTTCTTGGGTTTGTGAAAT
ACCATAGAAGATCTGAAAATAATAATCTTATAATTTATCCATTCATTCTG
CTCTAAAGGGATACGATGAGTTTGTTAATCTGACAACATTGTTCAGCTTA
AACCTGTAAAACTGCGCCAGTGCCATCTTGTCTGTAAACGAAAACTGCTT
AAGCCTCCCCTGAGTGCCTCGATGGGTAATGATTAACACGATTAACGTTT
ACACCCCATTATTGCATCTTAGGGGGCGAATAGATTTAAAAAACCCAGCT
TATCAAAGGGATCTTGAAACTCTTGATTTTTTTGCTTCGACCAATCATAA
CGCTCAATACTGTACCGTTTTCTCGTCGGAATATCGGCACTTTCAATATA
TATTACTGGCCTGTACTGGCCTCTCGGAAGTCCCCGTTCGTTAGATTTAT
GAATTGGTCACGAAAAGTATACTTTTTGCATTTATACAGGCACGACGCAA
CAGGTACGGCGGTCGCCGTTTCAGATTTTCACAAAAAAACCCGAAACTTT
CCTCTTCGTCGGTATAACCGCTATAAAATCGCTAAAATTTCGTCAATCGC
CGTACCAGATATAAAAAGCTTCCGTCGTGCCTGTTATATAAACTTTTGAA
AGATTCTAACACACGCTAAGAATGTGAAACAGAGCAGTCTGAGTTAAATG
TACTGTAATTTAGTACTCATGATTCGCGAAAATAAAGCATGAACATACAT
GTTTTTCTATAAAAACAAACTATATAAGAACAGAAGGCTTTGGTGGCAAA
AATATTGGGAACAACTTAAGAACATTTCAAGGCTTTATAAACTCCGAAAG
GCCCTATTCCTAAGGAAAATACTCAAAAATACATGTTAGGAAAATCTTTA
GGCTTAAAACTCAAAAAGTTAAGGACATCCATAGGCTTCTAAAACGTGCA
TTTGCTTCTTGAGAGCCCTCCTCTCATTATCTTTTCAGCTTTGTTTGTTT
TGATAAGCATAAACCAACTTTAAACCACCGACAGTGCGTAGGAAGTTACT
ATTTGAACATGCGAACGGCTGAAATAATCAAAAGCTAATCATTTCCATTA
CCATCATAAAGCCATTTGTTTGCCTGTTTTGCACAAAGATAGCGAGAACC
AGCAGCGTGGTGGGTTGACAAAAATTCGGACAAACTGGGGAGGCAAATTT
GGAATATTATGATTTTGGCGCCCCCTATGAAAAATAAATATGTTCGAAGC
GAGTACGAGGTATTAGACTCTTTTTGGCCGAAAACTGCCATATCTAAGAT
GTAAAAGAGCAAAGGGCGCCGTAATTAGTAATCGCAGGCGTCCTTTTGCG
CCCTCTGTGTTTTGGCGCCCCCAAAAAATATCGGCCGCTGGGGGGCACTG
CTTCCCCTCCCTTTGCCACCACGCTACTGGCGAAAACCCAACCCCCCCTA
CTCGAATAATAATAATAATGCCCCCCCCCCCAATAATTTTTTCAAAAATG
GTTATTTTGCAAAATGCAAAGTTTAAAATTTTCTCAATTTATACCAGGGC
GTCAGTAAAATATTCCAAGACAAAACCTCAAATTGTATCCAGGACGTTGT
GCATAGGACGTCAAGTGAAATATTCCAAGCCATAATCTCAAATTGTACGA
AGACGTCATGTGGAATATTGCAAGTCGTAATCTCAAAAATATACCAGGAT
GCTGTGCCAAATATTTCATTTCGATATCGTGCTCTCTGCAGATTACTGAC
ACACATTCTCATTATTTTCCCACGCATCCCATTTCTTATTCTTAGCTACC
TAAAAAAATTTAGAATAATAATCTGATAATTTTTACCGAGTACCTAAAAC
TTGAATTTTTAACTAGGTAATGAACTTCTCGACAATTCAAATCAAAATGA
GAATCCCAAATTTTGAGGAAGTGTGAAAGTTTTCTTACGGTAAAAGCAGT
TGTTAAAGTCCACAATAAACTTTGTTTGAAAGTTGTCAAAGAACTGCTAA
CACCAGATGGAAATAACTTGAGTGGAGATATGAGAGTATTCATAGTATTC
ATAGAAATACACAAAGTGACTTACCTTATATTTTGTGTCTTTTTGCTGTA
GACTTCAGTTAAAAAATCAGTTAAAAAAGACAGCTTCTACAGAAACATAC
TTGAGGAAAGAGTACTCCCTTGAACTAAGTTGTCTTGTAACAGTCTCACT
GGTTAGTCCAAGCAAAACCGCAAATTCTTTTTTATGCCAAACAGTTATCG
TCCGTTTCTTCGAAACTTTCCCGCCGACTTTTTCCCGTATACCGCCATAA
CGCCATACCGCCTTATTTTCCCGCCTTTACTATCACTGTAACGGACGATA
ACATCGTCTAAGCTTCTTGTTACAAAAAAATATCAATTTCTTAGCCGATG
TGACAACATCAATCTGTATGTATTCCAAACAAACAAAAAGATTTGATTCA
CAAACTACATTCAAGGGGGCTGGGCGAGCTTTGCGAACAAGAGTTCTATT
GTTTATATGATAGAACCACTACAAAAAGTATTTTTCGTATAAATCTATTC
CAATGGTTCTTTTTGATTAGTTGTGAAGCAGACAGCTACTGTATCCAGAC
AAGATGGGGTTGGTTATTATGATATTTTTGGTTTTGCTGCCTTTTCTATT
CGGTGCTTCAACTGCTTCCGATTTAAACCAACTGAAAACTGAAATTCAAT
CTTTGAAAACGCAGCTCTCTCAAACCAATAAAGTATTATTTTACTTGAAA
AGCTAAGACCAATACCTGAACGGGATTTGCGATTTAAAAGCCGATAAATG
TGGAACTTGTTTCTGCCGTCAGGATTATAATACTATCCAGAAATATTACT
GTGACTGCAGAGCGAAGCCCGTGCGCCGTGACTGTAAGGATCACTATCAG
TATGGGGAGCGTATCAACGGCTTGTATCGGATCAATCAAAACATATATGG
AGACATGGTACAGGTGTATTGTGACCAGACGACGGATGGTGGTGGTTGGA
CCCTGATACAAAGAAGGGTTGATGGGTCCACTAATTTCTATCGAAACTGG
ACGGAGTACAAAATAGGATTTGGTAAACTTCACAGAGAACATTGGCTTGG
TAATGAACTGATTTATCGCCTGGTAGCACAAGCATTTCTCAGAGGATCAG
AAGCACGTTTCAACTTGCAGGCTAAGGGTGTTTCGTCACGGATTTGGGCT
AAATATTCAACGTTCGAGATCAGTCAAGAATCGAATGGTTATCGACTTCA
CGTGGCAGGATACAGTGGCAATGCAGGTAAACTTTAAAAATTCCTTTGAA
GAAATTCTCGAAGTTATATTTTGACAGTCACGAAAGTTNGTGAAAATTTT
ACCTCCTTTCTGAAATTTTATTTTCCTTTCAATTAGTTTTTTTTTTCCTT
TCGTTTTTTCCCTCGAATCGTGTGAGTCATCTACGCGTAACATTTATTTT
TGAGGTACAGGGTCAATTTTTTGCCACGATATCCTGTATTTTCCCGCCTA
TTTTTATCTGTCTTGTAGCCCTTAAGTGTTTCATTCGAGCCCCTTCCCAT
AAGATGAATCTGTTGAAAAATAGTTAGATGAGGGGGAGAAAATGTCTACT
TCGCAACATTACAGATACATGAAAAGGTTTTTTTATAAGAATGGCGTTTT
TCCATTTCATCATAGATATTCTTAACTTTTTTATTCTTCCGGTATTCTTA
GGTTAGGATCCAGATTCAAACAAGCGTGATACTCTTAGATTCCAAACAAA
CGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NGGGGGGGGGGTTTGGAAATTTTACTTTTGAAAACACAAAAATAAGGTAA
ATGTAGGCTTAAATCAGCCTAAGACTCACTAAAAGGTCCATTTCCTCTTT
GTGCAGGCAATAAAATGGCAAAGCATGATGGTTTGAAATTTACTACATAT
GATCGCGATTCTGATACATGGAGTCCTGAAAACTGTGCTAAGGAAAGACG
AGGAGCTTGGTGGTATCATAAATGCACTGATTCAAATCTCAATGGGTATT
ATGATACTTTTCAACAAAAAGATCACCATTACAGTTTGGCATGGGACCCG
ATGCACATCAAATTCTCGGAAATCAAGTTACGTCGAAAGTGAAAGTCATG
ATATTCATGACGTAATGTTTTATACGAAAGATCCCGGTTTTTGCCAGTAG
TGGCAAATTTTATACAACTTTTGTCTAGTTTAAAGTTGCCACTACCGGCT
AAAACCGGGGTATTTCCGTAGAAAACATTACGTCATGAATATCAGGAATT
AACATCAATCTATATATCGGGGTTTGATTTTTTCAAAGTTGTATTTTTAG
ATTTAGCTTGTTGTAGTTTAGCCACTGACAATATTGAAGGATTTATCAAC
AGAAGGGCAAGAAGATCAAAAAGTCGATAAACGTTTGGAAAAATTAAAAT
TCAACTTCTTTTTATTTAAAAGGTCTTGTTATACATTTAAAATCAACCAT
ATTGTTCATTTAATAATATTTTGAATTATTTTTCAAAATGTATCTTTAAC
ATTTCGTTAAAAATTTTGCCTTCTTCTTTCATTCCAATACTTTACTTTCT
TTATGAATATGATTTTGACCAAATTCACAAAAATTGGTTCTTACAAAAAA
TAAAAAATATTACTGCTTTGCCCAACAGGGTCTCGACAAAATCATCTTTG
TTCAATAACCCTTAATTTTCTTGGCCAAAACGAGCCATCTTTCACTAACA
CTCGCCAAAAAAAGTTCTTACCGAAATTTGAAAAAATTGCTTTTTCACCA
ATATACGTTCTCGACCAATTTGAATTATTCACTATTCCACTGAATTTCTT
CTATTTCAGCTGACAAAGACTTCATTTCTTCGTTTATATCAAAAAATATT
TCATCCTGTGCATATTTCTCCAAGACATTCATTAAAGCGAAACTTTCTTT
ATTTGTCAGGAGCTTGAATTTCTTTCGATAACTCAATTTTGAATAGAATA
ATACTATATTTTTCTTGCCTAATTCAAACAAGCATTTTCGTGCCACCAAT
ATTTTTGTTGATTTATTCAGCCAAGTGAATTCCTCAGTCATTTTTAAAAC
TTGAAAAGGCTCATTCAAAACTTGAATCAGTTCTTTCCTCGTATAATCAA
ACCCCATCATTGATACGAGTTTTAGGAGCCTTAACTGAGATTGGTATGTT
TCATCCCCAAATTCAATTTCTTCAGCAATATAGTTTCCGATTTTATCGAT
GATCCACTGGACTTGATATTCTTGACAGATCGATGTTAATGCGTACAAAT
CAACATCGCCTAAAAATGACATAAATTTTTAGATTTATTTCATTAATTTA
TTAGAAGTCACAAGCTCTGCATAAGTTGCTAATGCTAGACATTCTGCATT
TAGAAAGCCTGTAATGGGCATCTTGCCCTTTAAGGGCAGTGGACTTTACT
CACCCTTAGTGACCTCCCTCCTTTGTAGCTGATTGAGTCGCCCCTGGCCC
CCCTGCCACCACGCCACTGGTCGCAACCACAGAAGACCATACTAAGGAAG
ACAGCTTTTCCATGAGAGCTCATTTCTCTCCTTTATCATCCTTTATTAAT
CCTAACTCGATCTAAAATTATTAGTCGAAGGATGAAACGAATTACTATAA
CTTACCATCAATTTCGCATGGTTTTGTCAGAAAGGTCAGGAAAAGGAGCA
CTTCCTTGATGTTCTTCCAAGGTAGTTCCAATATCAATTCCTTATCTCCA
AGATTTTCAAGGCGTCTCTTGAAAACTGGTGAACTTTTTATCAAGATATG
AGAACTGACGTACAGTTTTGTGCCGCTGACGATAATTGTCACGTCGGTAC
CAAATTTCTTCTCCTCAAAATCGCTTTGTTTGATTTTCTCATAAATTCCA
TATTCAATTTGCTTTTTGAATTTCTTTTCGGCGTATTGGTCTACAACACG
ATCTTCATATATCAGAAAATTGAAGAAATTGATAATGGCGTAGAATTCAC
TTTTATCATTGGTTTGAGTGAGTAAATTTTCCATTTGTACTTTCCAGATT
TCAAATTGAACTTCCTTACTAATATCTTTCATACGGTCAGATTTCCATAA
CGAAAAGGGATCAGTCGTCTTTGTTAAGCCTGTCATGAAACCATTCAGGA
TGTTTTCGAGTTTGAATCTTTCACAGATATGTAATATGTCGATATGATTG
CAATCCAGTTCACCGTTGAAGTGTTCCAAACCAGACTTGTGGTCTTGAGT
CAAATATTCTTCGATTGATTTACGAAATGCATCCAATTCCCATTCATCAC
AGAGTGCCAGAAGTTCAGCAAATTGATCTTCATCTAAAAGGGATAAGGCC
GATAAGATATTGGAAGATAGTGTGAGAAATCCTTTTGATGTGTTTTATTG
GCCCATTCCATTAAATTTCCATACAGGGGGTGGGCGATCCTTTTTAAATA
AAAAAACATGTCTTGGTAATGAACGGATAACCCCTGGAAAATGGCAAAAT
TTTCAAAAAAAAATTTCATATCTTAAAATGACGATAAACAAACTAAAGTC
AGTCTTTTTCATCCTGTAAAAATGAAGAAAAATACTCTTTCAGACCCCTC
TGGACATTTTGCTTAAATTACTCCCTGGAAATGTTCGTCCACCCCCTCTA
TGGGATAAAACGGAATGGGCCATTGTAAAGCTATACTCACATCGCTGAAA
CCCCTCATCCCTCCCTCTGTCTGATCTGAGAGGTCAAATCTCAGCTGGCA
CCTGATTTTTACCTGAGACCAGGGAGGGCGAAGGACCTGCCGAAAATATT
CATTAATTATCTCAAAGGAAGGACTTTTGGCAGAAATTCAATTTGGCGGA
TGGCGGAAAAAATAGATTTTGGCGGGAACTTAAGTAAATCCTCGAGTAAA
TCCGCCAAATTCGTCAAATTTTCTTCCCGCCTAAAGTTCTTCTTTTTAAA
TAAACTAAATCCTAATAGCCTTTAGGATCAACTGAAGCCTTCTTTCAAGC
TACTCATTAAATAAAGCCCTATTGTTTAATGATAATATTATTTGTGCCTT
CCCCAGAAGTTGTTCGATTTTATTATTGTGATTTCAGAGTTAATCAACCA
GTACCTTTATTGAAAATTTCTTTTACCTGTAAATTTGATGTAGTTTTGAG
GATGATAAAATGAAATCGCTTGTTGAACGCTTTCCCATGTTACTTTCAAT
TCGCTAACATCAATTTCTTTGCTCTCCTTGCAAGCTAAAGTTTTCAATTT
TTCTGAGATGGAATCTATGTAACTGGCTGGTACTTTGACCACGTTGTCAT
GTGTTATAACAGTGATGCCACAAATCTCGTCATCCAAATCGAATATAGTA
TTAACTCTTGGAGATGTTATGATTTCATTTTCTTCATCGTGATAGTCATC
CAAAGGGTCATAATCTTTCTCCCAGTATTCTTCTTGAAAATCTTCATAAG
ACATATCTCGGATTTTTAACCCTAAAAAGTTGTAGATGTAAACGTACTTT
GACTTTTAACTGTTAATGAGTGTGGCTTTTATTTGACCCAATTGGTTGGC
GTAACAGCCAATCACCTTACCAACCAATCCTGATAAAAAAATCGAAATCG
GTACTATCGCAAACCTAGTAGATCCATTATCAGGCCCGGCGGAGGCGGAG
AGACTGGGGAGACTTCAGCCTCCCCAACTTTGAGCAAATGAGATTTTTTT
CTCAAATTGCTGGCGAATTTTATCTCCTTTTGAGCCTTCAGCCTCCCCAC
TCTTACTTACGATTGTTCCTCCGGGCATGATTATGGATCTTGTTTGATAA
TCAGCATCTGGTCAGGTAATTGAAGTACAATGGTGAAGGTTGACTTCTTG
CAAAAAAAAGAATTATCAAACCATAAGCTGTACAAGATGCATTGATTGCA
AGATGACATGCAAGATTTTTTCAATTCCTTTACACGTTCTTTAAGGTTTG
GGGACACGAGAAGTTTTTTTCGCGTTGGTGCAATGTAACATACTTTATTC
CACCAAGACAAGAAAAAAAGTGCGTATCTCATGGTTTCTTTTTTTGTTTC
ATGGGACGAAAAGTGAGAGAAATACCCAAAAGACACGCTGATTTTGTCCC
TAGAACAAAAGTGAGAGAAGCACAAATGTTATTAAACGAAAACAAAGTTT
TCAATTTTAGCTTATAAGCTTGAGTTTTTATCCGCAATCGTATTTTTCAA
CGACGATCGTACCTCAACAAAAAACTTACCACCAAACACACTTATGCGTG
TACAGTACACACTCAAAAAAGTGAAATGATATCTGCTTTGATAAAAAATA
TCATTCCTCACGTGGTTTGTAAACAAAAGAGTTCTGAGAATTCGTATCAA
ATATCAGTTTGAAAATATCACATTATATGGTTTTACTTCTTGTCATTAAT
GAAGCAGTGAATTGAATACTGACATTCGTCATTCTGCTTTTGTTTTGATT
TCTCCGACCTTTTTCTAAGACGACTCGCCCTCTAAAAATGACTGACTGCT
GCACCGTTTTATTTGCAATACATAAAACTCGTTAGCCTAGTTATACGAAG
TTCTTAAGACCATATAACGATATCGGTGCTTTAAAGACTTTTTATATACT
TAAGGGGTTTTAAGTCAATCTCCGAGAAGATTCTGATACTCCGCGTATTG
CACGTATTCACTACGTTTGCACGTATTCACTACGTAAGACATTTGCCATA
TCCCTTTAATGCGTCGTGTGTACAGAATGGATAATCTGTTATGAGATTGC
TTATGAATTTGTATTTCTTGTCACAAAAAACCATCAGAGAGGAATCCTGG
TTACTGAATCAAACTAGCTTAGATTTCCAGGATACTAATAAGTCTATTTA
TCAACTATCAGCTCTTCCTTTTCTCACAGGTGGTCGATTCAAGATCGTAA
TGGAATTTGATAAAGATTTCGATGCCATTCCTCCGCGTATTTCGTTCGCT
CGACCCATTCCCCAACATCCTAATGGTAAAAATGTTCAATCATATTTTAT
CCTTCCTTACGAAGCGGGGTTATAAAGACATACACGTGTACGCCTTTTTA
TAAGAGCAAGTATGACTTTGGGTGCGACTTGTATGTTCTTTATATTTTTT
TATTTTCACTCTTAAGTGCTCTTAATTGTTAAATTTTATTCACTTTCAGG
CTTAAACTTTTCTTAGTTTTTTCTAAAATCCGAAGCGAGATTGTTCTTAA
TTTGTTCTTAGGTTTTCGTCAAAATCCAGCCTAATATTCTCATAAAATTG
CCAGTAAATAACTGAACTAAAAGAATATTCTATCAACAACATCTTGAAAC
CACCTGAGTTTTGTTTTTATAGTTTCCACAACTGACGGGCAAGTTTGCCT
TGGTTGTTTGGAAGAATGGAAACCAAACACTTCACTAGCCTCTGTACTCA
TCTCTATCCAACAATTACTATCAGAGCCTTGGTTTGAAAAAGCCTGGAAC
GAGGATGCAGTTCATATTGCCATGGAAACACCTAAGCAATACAAACAAAT
GGTTTTGGATAATGTGATGAATAGTAAACGTGGAGTGGTTGTAAAGGGTA
AGACTTCAAGTTGGTATCTTTTTCAAAATTCGCAAGATAGGAATTCATGA
TCATATTCATTATACGTAACGATTTCTACGGAAATACCCAGGTTTTTGCC
AGTAGTATGGCAAATTTTAAACAAATTTTCTCAAGCTTATATTTGCCACT
ACGGGGTATTTTCGTAAAAATACATTACGTCACGAGTATCAAGAATACAG
TTTTTTTCCTGATAAATCGGAAAAAACTCTTTATCGACGAAAGATAATTG
TAAGATTAATCCCCTCGCTGAGTTTGGAATTAATAAAGTGAGATAAAAAT
CCTCCGTTCTCACTATACATATATACATATGAAATTATCTAGTTATTCGT
GCGATATCGATATGACCCATCAAGTAGCGTATACAAGGGAGGCGCAAAAT
TTGTGTAGGAGAGCAGATTTTTATGACACAGTAATTATCTTTTTATATTA
TAAATAGATAATTACTGTGTCATAAAAATCTGCTCTCCTACACAAATTTT
GCGCCCCTCTTGTCTACGCTGCTGNATGGTGTAAACATTAAGGGTGTCAT
TTGCCTTTTCACACCCGTGTGAAATACGAACTGAATCCCACTCTGGGAAA
TCAGTTTTCACACAAGTGTGATTTAACGATTTTTTCCTGTGACAAGGATC
AGAAAGTGCGTAGAAAACCTTCCATCTTAAATCTTGTGTGAGTTCTGAGG
TATAATTAAACATTAACATTCAAATTTCATTCGCCAGACCCAACACCTGC
TGCAGCAGAGAAGGAAACCTCACCGAAACACAAAACCATCACTTTCAAAG
AAATCTCCTCGCCTACACTTCCCGCAAATAAGAAAAGTTCGGAAAGGCTA
TCTTATGAGAGTTATTTGTACGATTGGAGGAGCTTGGGGACAACACATGA
TGAAATTGATGCCAATACTGTNTTGGAAAATGGACTTTTAAAACCCCTAA
AAAGTGTCAAAATAGACTAAATTTAGGCTTTTTAGCGTAAAACAAGAGAC
TTTCCTTTTCGGAGCTGGGAATTTTTTCAAAAATTAACAAACGGGGGGGG
TCCAAATAACGTCCGGGGGGGTTGGAAAAAAATCGAAAAATTAACAAGCG
GGGGGGCCCGTTTATTTGGCACCTAAGAGTACAGTGTCATAAAAATCTGC
TCTCCGCCTACACAAATTTTGCGCCCCCCCCCCTTGTCTACGCTACTGCC
CATCAGGTTGTTGCAATCATTAACCGCACCTAATCATATACATTTACAGC
ACACACAGGAAAAAATCGTCAAATCACACTCGTGTGAAAACTGATCTCAG
TGATCCCACAGTGGGATTCGGTTCGTTTTTCACACGGGTGGGAAAAGGTA
ATTAACACCCAATGTGTTTGTCTCATGTCGAATTAATTATCAAACTAAAC
GCTCAATCTGCAATGACAATCTGACTTAATTCTTCTTAAATTTGAGGTGT
TTTAGTCTGATACTCAATTCAATATGGTGTAAACATTAAGGGTGTCATTT
GCCTTTTCACACCCGTGTGAAATACGAACTGAATCCCACTCTGGGAAATC
AGTTTTCACACAAGTGTGATTTAACGATTTTTTCCTGTGACAAGGATCAG
AAAGTGCGTAGAAAACCTTCCATCTTAAATCTTGTGTGAGTTCTGAGGTA
TAATTAAACATTAACATTCAAATTTCATTCGCCAGACCCAACACCTGCTG
CAGCAGAGAAGGAAACCTCACCGAAACACAAAACCATCACTTTCAAAGAA
ATCTCCTCGCCTACACTTCCCGCAAATAAGAAAAGTTCGGAAAGGCTATC
TTATGAGAGTTATTTGTACGATTGGAGGAGCTTGGGGACAACACATGATG
AAATTGATGCCAATACTGTCACGAAAGAATTGAACAAAAAGTTAGACATG
TCCGAGGGATCTCTCCAAGGTAAGATGAATCTTTTATTTACGGACACCCT
CTATAGTTATTAAGCTTTTTCAAATCCCAATCTTTTTTTCCACTATCGAA
AACTAAAAATTAGGTGTTTGTGAAAAAAACCATTATCCATGAAGGATATG
CGCAGTAGTGTAGTGGTTGTCAATCTTGACAGCCGTCCAGGAGGTCGGGG
TTAGATTCCTGTTCGGTGCTGTGACTTCGCAAATTAATGTACCTTCACCC
GGGCCAACCCTTGCTATGCGAGGGAAATACACGGGTTGCAAAATGATAAG
AGTGTAGTCAAAACATGCGATTACTCGAAAAAGTTCACGTGAGTTTATTC
CTATGTTACTTGCTTTGCAGATGATAACTTTATTAGTGTCAATAAATTTG
AACCAATCAGAAGTAAAAGTCATGCAACAAGCACATAAAAATTTCGAGTA
AAAGCGTGATTTGTCTTCAGACTTTTATTTTGCAACCTGTGTATTGCCCT
GTATTGGGTAGACAGAAACTCCAGAAGCCTGTCGGTGACTGCTAGGTATC
GACTCCACAATTACCGTTGATAAGGTGAGAGTGCGCTGGCCTTGTTCCCT
AGTGGTTCACACTATGTGTACACAATTTTAGATAGGTTGTAATATCTTTC
CCATAGAATCAATGAGTGAAACGATTTTCCAACAACTTTCCGATCACCTA
TCTTTCCCTTAGAATCAATGAGTGAAACGATTTTCCAACAACTTTCCGAT
CACCTATCTTTCCCATAGAATCAATGAGTGAAAAGATTTTCCAACAACTT
TCCGATCACCTATCTTTCCCATAGAATCAATGAGTGAAACGATTTTCCAA
CAACTTTCCGATCACCTATCTTTCCCATAGAATCAATGAGTGAAACGATT
TTCCAACAACTTTCCGATCACCTATCTTTCCCGTAGAATCAATGAGTGAA
ACGATTTTCCAACAACTTTCCGATCACCTATCTTTCCCATAGAATCAATG
AGTGAAACGATTTTCCAACAACTTTCCGATCACCGCAAAATAACATACGG
TAGTTTCAATTCCACAACGGAAGATGAAAAAGCAGTCAAACGTGCTCAGT
TATTGAAAGACAACAAAATCAAGTTGTTGAAAGATCTACATTCCAACAAG
AAAGGAATCAAAAGTAAGAGGATTTCTTGGGTTGAAAATGAAATCGAAAT
TAGGCATGCCAATTTATTGTAAAAGGAAAAGAACTGTATCTTATAGGATG
AATTCTGGAACGTCACGTGATCTATTTCTAACGATTTAATTCGTTGGAAA
CCATTTCAATGCAAAACTCCTTTACTCACCATGCATAGCCACACCAGATA
TAAATTCCTTTTTCTAGCCTTGAGTAAAACCTCCAAATATTTGTTGCCAC
ATTTTTGTCCAAAGTTGAGATCTCAAAATTTTAAATTTCTAAAAATGAGT
TCTTAAATGGTTCTAACTAAAAGTCAAAAACTTGTAACTCTCAAATTTGG
AAATTAATTAGGCCAAGTATTTGGAGGTTTTGCCTTAGAAGGAATCCATA
TGCCAAATATCTACAAGTATCTAAAACCATCTGTTTATCCATTGAATACT
TCTTGAGCTCAATATGATAAAGAATCCTATCTGAAATCATGGACAAAATA
TTTGAGACAAAAGGGAGTTCCCGGTGAAATTTTAAACACCACGAATGATT
TTAAGCGCCTTAAACTACAGTTGGAAAGTAGAGTTTTAACATGAGACTTA
AGGCTTAGGACCTTAGGATCTCAGGATTTAAAAGCTCAAATTTGCTCGAA
TAAGGCTTGGAATATAGCCTAGAAGCCACCAAACCCCTCTAAAATCGATA
TATTTAATGAAAGAAAGTGGAAGTGCTAAAATAGCAATTCTCGCCCAACT
TTAAATTCTGAAAAACGTTAAAATCACTAAAATCTCAATATATTTCGACC
ATGATTGTACACAGGTTTGAGAGTGTCGTTACCAACATCGCCGGCAAACA
GTCCTGTAGAAGACTTGTTCGACGAATCAAACCAAGTTACTGAATCACCC
AATGAAATTGAAGCACAACAATTGTTGGAGTGGAGTCAAAAGCTCCCTGA
GAAGCATACCTTATGAATGGTGTAAGAAGGTGAGGTAAAATTTTTATTCA
GTCAACAAAGGTATGTTATTTCATTAACTGTCCAAGGCTTTTCCAGAAAA
GACACTTTATACCCCTTTTAAGGGTATTGATTATTTAAAACAATAGAGTA
CTTCAAAAATATCCTCAGGCCATTGAATCCAGCTGGATATTCACTTTCTC
GTAGCCCCTGGTTTCCTGATAATAGTAATTTTGGTTAAAAGGATTTGCTG
GAAAGCCTATTTTCATCCAGATAATTTATTCATTTAATATTTTATTTTCA
ATTTGTTATTTTGTTAATTCTATGGGATGTTTTTTTAACTTCGAGGTTTT
TTAAATTATAGATTGTAAATTTCAGTATTTTAGTGGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029700XLOC_029700Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046533-exon-scaffold_113-1575043694:261091..261258TCONS_00046533-exon-scaffold_113-1575043694:261091..261258Clytia hemisphaericaexon
TCONS_00046533-exon-scaffold_113-1575043694:253332..253434TCONS_00046533-exon-scaffold_113-1575043694:253332..253434Clytia hemisphaericaexon
TCONS_00046533-exon-scaffold_113-1575043694:243784..243879TCONS_00046533-exon-scaffold_113-1575043694:243784..243879Clytia hemisphaericaexon
TCONS_00046533-exon-scaffold_113-1575043694:243212..243436TCONS_00046533-exon-scaffold_113-1575043694:243212..243436Clytia hemisphaericaexon
TCONS_00046533-exon-scaffold_113-1575043694:241290..241523TCONS_00046533-exon-scaffold_113-1575043694:241290..241523Clytia hemisphaericaexon
TCONS_00046533-exon-scaffold_113-1575043694:240146..240372TCONS_00046533-exon-scaffold_113-1575043694:240146..240372Clytia hemisphaericaexon
TCONS_00046533-exon-scaffold_113-1575043694:238821..239344TCONS_00046533-exon-scaffold_113-1575043694:238821..239344Clytia hemisphaericaexon
TCONS_00046533-exon-scaffold_113-1510915933:261091..261258TCONS_00046533-exon-scaffold_113-1510915933:261091..261258Clytia hemisphaericaexon
TCONS_00046533-exon-scaffold_113-1510915933:253332..253434TCONS_00046533-exon-scaffold_113-1510915933:253332..253434Clytia hemisphaericaexon
TCONS_00046533-exon-scaffold_113-1510915933:243784..243879TCONS_00046533-exon-scaffold_113-1510915933:243784..243879Clytia hemisphaericaexon
TCONS_00046533-exon-scaffold_113-1510915933:243212..243436TCONS_00046533-exon-scaffold_113-1510915933:243212..243436Clytia hemisphaericaexon
TCONS_00046533-exon-scaffold_113-1510915933:241290..241523TCONS_00046533-exon-scaffold_113-1510915933:241290..241523Clytia hemisphaericaexon
TCONS_00046533-exon-scaffold_113-1510915933:240146..240372TCONS_00046533-exon-scaffold_113-1510915933:240146..240372Clytia hemisphaericaexon
TCONS_00046533-exon-scaffold_113-1510915933:238821..239344TCONS_00046533-exon-scaffold_113-1510915933:238821..239344Clytia hemisphaericaexon
TCONS_00046533-exon-scaffold_113-1491911889:261091..261258TCONS_00046533-exon-scaffold_113-1491911889:261091..261258Clytia hemisphaericaexon
TCONS_00046533-exon-scaffold_113-1491911889:253332..253434TCONS_00046533-exon-scaffold_113-1491911889:253332..253434Clytia hemisphaericaexon
TCONS_00046533-exon-scaffold_113-1491911889:243784..243879TCONS_00046533-exon-scaffold_113-1491911889:243784..243879Clytia hemisphaericaexon
TCONS_00046533-exon-scaffold_113-1491911889:243212..243436TCONS_00046533-exon-scaffold_113-1491911889:243212..243436Clytia hemisphaericaexon
TCONS_00046533-exon-scaffold_113-1491911889:241290..241523TCONS_00046533-exon-scaffold_113-1491911889:241290..241523Clytia hemisphaericaexon
TCONS_00046533-exon-scaffold_113-1491911889:240146..240372TCONS_00046533-exon-scaffold_113-1491911889:240146..240372Clytia hemisphaericaexon
TCONS_00046533-exon-scaffold_113-1491911889:238821..239344TCONS_00046533-exon-scaffold_113-1491911889:238821..239344Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_113supercontigscaffold_113:238821..261258 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.2826	0.651509	3.67947	3.36391	0.732767	1.33469	2.51502	2.18104	1.05337	0	0	2.21544	0	0	0.387412	0	0	0.524961	0	0.758934	0	0	0	0.625596	0	1.15398	0	0.998412	0	0
Blast
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BLAST of TCONS_00046533 vs. Swiss-Prot (Human)
Match: UBE2U (Ubiquitin-conjugating enzyme E2 U OS=Homo sapiens GN=UBE2U PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.737e-18
Identity = 45/149 (30.20%), Postives = 80/149 (53.69%), Query Frame = 1 
Query:  112 RSVLLLQKELFKINQSKVWGIEVEPMKCEDDDGEEDVFRWNVLLSGLKKTPWKGGRFKIVMEFDKDFDAIPPRISFARPIPQHPNVSTTDGQVCLGCL---EEWKPNTSLASVLISIQQLLSEPWFEKAWNEDAVHIAMETPKQYKQMV 549
            R+ LLL ++   + ++   GI  +P+        ED+  W V + GL+ + W+G  F++ + F  +++  PP + F   IP HPNV    GQ C+  L   E+W  N +L+S+L+++Q +LS P  E   N +A  I ++    Y+ ++
Sbjct:    4 RAYLLLHRDFCDLKENNYKGITAKPVS-------EDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFIT-IPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTIL 144
The following BLAST results are available for this feature:
BLAST of TCONS_00046533 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UBE2U3.737e-1830.20Ubiquitin-conjugating enzyme E2 U OS=Homo sapiens ... [more]
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