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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046555 ID=TCONS_00046555|Name=TCONS_00046555|organism=Clytia hemisphaerica|type=transcript|length=1352bp
GAAAAAGCTTGCGAATTAAtagtgatgagtaagcaaacgataaaACAACT
ATGCAAAAGGAAAATCCTTAAAAATGATTTGGGACTTTCTGTTAATTACT
TTTGATAAATCCTTTTGTTAATCCTGCTTTGTCAGCAGAGAGGCGCGCCT
TCTTTCTATATCATGAAATGGAACATCTTTAACCTTGCTAAACCTGAACG
ACGTCTAATTTTTCTTCCCCTCCCGTCAGGCGGATCTATGACGAGGTAGA
AGAACAATCCAATGCTGTGTGGAGCGTGCAACGTTATCAAACAGTCAACG
AATACGTTCGAACTTCAAGAGTACCTCACCCTTTCTCCGTCATAGCTGAT
ATCTATCGCTCCTTAGAATGGATCACTTGGCAATGCTGTTGTGGGCAAAA
TACATTGCGTCCAAGATCACTTTCAATGATTCTATACGAGGCTGATTTAG
AGAATAACAAAAAAGCGAAAAAGATGTTGACTTTCTTCGAAAGAGAAATC
GCTAAAGAAGTCCGCAAGAGATATGAAGAGAAAAACTCgaataatgatga
cgtcaccgcTTTATCTGAACGtaTCGAAGATCTCACTAAAAGAATCCAAA
CCCTGAAAACCAAGGAAGTTGTTCAATGAGATGATGTCGTGAGTCTACGG
TTCCGAAGGACAAAGAAACGATAACACGAAATATTTTGGGAgatgaaata
aatttttacttcaaGACACTGCATCTTTTAATCGGTGGTATCTCAGTAAA
ATAAACTTCGCCGATTCCAGAGATAAATTCCACGTAGGATTCGATTTTTC
AAAACAGTCTTTTGGGTATAGTTGGGTATAGGCCCTGGTTTTGGAGAAGA
TCTACATATGgaagaacaatgtttttatACGCACCGAAAGTTCATTCATA
CGCACCGAAAGTTCATTCATACGCACCGAAAGTTCATTCGTACGCACCGA
AAGTTCATTCATACGCAGCGAAAGTTCATTCATACGCACCGAAAGTTCAT
TCATACGCACCGAAAGTTCATTCATACGCACCGAAAGTTCATTCATACGC
ACCGAAAGTTTCATTCATACGCACCGAAAGTTCATTCATACGCAGCGAAA
GTTCATTCATACGCAGCGAAAGTTCATTCATACGCAGCGAAAGTTCATTC
ATACGCAGCGAAAGTTCATTCATACGCACCGAAAGTTCATTCATACGCAC
CGAAAGTTCATTCATACGCAGCGAAAGTTCATTTTTGTCTGACATTAGTG
ccctttatttttttaaattgttcagttttttttacctgcattttattata
tagtccatttttttcaattcataacttttttcagaaagaaaaagaaaacg
cc Run BLAST on NCBI protein sequence of TCONS_00046555-protein >TCONS_00046555-protein ID=TCONS_00046555-protein|Name=TCONS_00046555-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
MEEQCFYTHRKFIHTHRKFIHTHRKFIRTHRKFIHTQRKFIHTHRKFIHT
HRKFIHTHRKFIHTHRKFHSYAPKVHSYAAKVHSYAAKVHSYAAKVHSYA
AKVHSYAPKVHSYAPKVHSYAAKVHFCLTLVPFIFLNCSVFFTCILLYSP
FFSIHNFFQKEKENA Run BLAST on NCBI transcript from alignment at scaffold_113:455507..459481- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046555 ID=TCONS_00046555|Name=TCONS_00046555|organism=Clytia hemisphaerica|type=transcript|length=3975bp|location=Sequence derived from alignment at scaffold_113:455507..459481- (Clytia hemisphaerica)
GAAAAAGCTTGCGAATTAATAGTGATGAGTAAGCAAACGATAAAACAACT
ATGCAAAAGGAAAATCCTTAAAAATGATTTGGGACTTTCTGTTAATTACT
TTTGATAAATCCTTTTGTTAATCCTGCTTTGTCAGCAGAGAGGCGCGCCT
TCTTTCTATATCATGAAATGGAACATCTTTAACCTTGCTAAACCTGAACG
ACGTCTAATTTTTCTTCCCCTCCCGTCAGGCGGATCTATGACGAGGTAGA
AGAACAATCCAATGCTGTGTGGAGCGTGCAACGTTATCAAACAGTCAACG
AATACGTTCGAACTTCAAGAGTACCTCACCCTTTCTCCGTCATAGCTGAT
ATCTATCGCTCCTTAGAATGGATCACTTGGCAATGCTGTTGTGGGCAAAA
TACATTGCGTCCAAGATCACTTTCAATGATTCTATACGGTATAGTCTAGC
AAGCTAGATGACTAATTCAGACATAGTAGAAATAGAGCAAAAAGTAATAG
AGGGAACAATTTTAGACAAACTAAATCCCGTAACAATAATCGTATTATCA
TATAACGCCTATACTACTATATCACATGCATTATAAACGACTCTAGTCTG
TACAACGGTATGATTTAATAATAAATGAGCTAATAACCTCTGGTACTGGA
ACACATTGCTGTACTCATTAAGGAGACGAGACGCAATTTCACGTGTTTTT
GCCAATAATGTTCCGTGACAAAATATCTGTGGAACAGTCTCTCTGCTTCT
CCTGTGTAGACCTTATATAGCAGTGAATTTTTGTAATATATAACAATAGC
GTCCAGTGTGAGGTCGTTGTTATTATTTTNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNTTCCTCAGCGCGGGTATGACAATTTGAGTCA
CAAAACCTTTCAATACCGCCCGCCGATTGAACCTTTAATGGCTTACTTAA
TGACCACTATATGGATAATAATCTTTATTATTGATGAAATTCTATTGTTT
TTCAGAGGCTGATTTAGAGAATAACAAAAAAGCGAAAAAGATGTTGACTT
TCTTCGAAAGAGAAATCGCTAAAGAAGTCCGCAAGAGATATGAAGAGAAA
AACTCGAATAATGATGACGTCACCGCTTTATCTGAACGGTATAATGATTA
TTGCCACGCTAGTCTGCGCTAGTCTCTATTTAAAACCTTTAACCATATTA
GCCCAACGGGCGTAGAATCTACCACGCTGGTGTTCTTTTGTGTATATCTC
AGAGAACGATTTTTGAAACAATTTGACTTTTAATAAAATTCTATTAAGAG
TACTTGTGTGCAATTTTTTAGGGTCATAGCTCGTCCAAATTAGGTTTTAT
GACTTTATCGTGAAACATGACATAAAATCCAGCTAAAATCGCTTAAAACT
CAAAATTTTAAAGTGCTAATAACTTCTGAACTGTTTATCCAATCATTTTC
AAATTTTGACACGTGATAGGCATTGAAAATTTGAATTCAATGAATTCAGA
ATTTTATTTGGAAATGATAACGTCATCATTTATGACGTCATCAAACTTTG
AAAATTTTACTTATCTTCAGCATGGATTTTAAGAAGAAATATCAATTGAA
AATGCAAAACCGGCAATTATCTTAAAGGGCCATCTTTTATCTTTCAGAAG
CTTTTAACAGAATCTAAATATCTGTAGTGGTTCGACTTTGACAGACATTT
TTGTAAAACATATATTTGGGCTGATGACGTCATCGCTTTTTGGATGACGC
CATGAATTTTTTTTTCTTCCTGGAAGTTTCTGTCATGATGGAGAACATCT
ATACCAATTTCCATGGCCATAGCTTTTCTAGAACAAAATTAATCGAGGAT
GGTAGATTCTACCACCTCCCTGGGGCTACAAAAATCAAAAAAGCTTGGGG
GTAATAGGGTTAACTTTCTGACTTTGATCGGAGGTTTCAGATAGGCACTC
TCCCGATGTGCGTATATTTTTAATAGAATGATTTTAGCTGCTGGATACCT
TTAATTACCGTTGAGACTAATTTTAAATTTAAGCTTTTATAATTTTTGTC
TCATTTTCTGTCACTAGTTGTTTGAATCGTACCCTTTTATAATGCCAGTA
AAAAATGTTTTTGATTTTCTTATTCATGAATTTCAATTTATGTGGTTAAG
ATAAGTTGGATTTTCCATGGGGACTCAATTTAGCAGATAATATCCTTTTC
TCCGAAATTCAAAAAACCCATTTACATTGATATATGAAAGTAAAATCATA
CTTCTTCCATATATTATGTCAGTACTCTTTGAGCAATGTTTACCATACAA
ATAAACCATCTAAGTTTCATTGTTGCTTTTCTTTTTCATTTTAGTATCGA
AGATCTCACTAAAAGAATCCAAACCCTGAAAACCAAGGAAGTTGTTCAAT
GAGATGATGTCGTGAGTCTACGGTTCCGAAGGACAAAGAAACGATAACAC
GAAATATTTTGGGAGATGAAATAAATTTTTACTTCAAGACACTGCATCTT
TTAATCGGTGGTATCTCAGTAAAATAAACTTCGCCGATTCCAGAGATAAA
TTCCACGTAGGATTCGATTTTTCAAAACAGTCTTTTGGGTATAGTTGGGT
ATAGGCCCTGGTTTTGGAGAAGATCTACATATGGAAGAACAATGTTTTTA
TACGCACCGAAAGTTCATTCATACGCACCGAAAGTTCATTCATACGCACC
GAAAGTTCATTCGTACGCACCGAAAGTTCATTCATACGCAGCGAAAGTTC
ATTCATACGCACCGAAAGTTCATTCATACGCACCGAAAGTTCATTCATAC
GCACCGAAAGTTCATTCATACGCACCGAAAGTTTCATTCATACGCACCGA
AAGTTCATTCATACGCAGCGAAAGTTCATTCATACGCAGCGAAAGTTCAT
TCATACGCAGCGAAAGTTCATTCATACGCAGCGAAAGTTCATTCATACGC
ACCGAAAGTTCATTCATACGCACCGAAAGTTCATTCATACGCAGCGAAAG
TTCATTTTTGTCTGACATTAGTGCCCTTTATTTTTTTAAATTGTTCAGTT
TTTTTTACCTGCATTTTATTATATAGTCCATTTTTTTCAATTCATAACTT
TTTTCAGAAAGAAAAAGAAAACGCC Coding sequence (CDS) from alignment at scaffold_113:455507..459481- >TCONS_00046555 ID=TCONS_00046555|Name=TCONS_00046555|organism=Clytia hemisphaerica|type=CDS|length=495bp|location=Sequence derived from alignment at scaffold_113:455507..459481- (Clytia hemisphaerica)
ATGGAAGAACAATGTTTTTATACGCACCGAAAGTTCATTCATACGCACCG
AAAGTTCATTCATACGCACCGAAAGTTCATTCGTACGCACCGAAAGTTCA
TTCATACGCAGCGAAAGTTCATTCATACGCACCGAAAGTTCATTCATACG
CACCGAAAGTTCATTCATACGCACCGAAAGTTCATTCATACGCACCGAAA
GTTTCATTCATACGCACCGAAAGTTCATTCATACGCAGCGAAAGTTCATT
CATACGCAGCGAAAGTTCATTCATACGCAGCGAAAGTTCATTCATACGCA
GCGAAAGTTCATTCATACGCACCGAAAGTTCATTCATACGCACCGAAAGT
TCATTCATACGCAGCGAAAGTTCATTTTTGTCTGACATTAGTGCCCTTTA
TTTTTTTAAATTGTTCAGTTTTTTTTACCTGCATTTTATTATATAGTCCA
TTTTTTTCAATTCATAACTTTTTTCAGAAAGAAAAAGAAAACGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046555-exon-scaffold_113-1575043694:459044..459481 | TCONS_00046555-exon-scaffold_113-1575043694:459044..459481 | Clytia hemisphaerica | exon |
| TCONS_00046555-exon-scaffold_113-1575043694:457494..457626 | TCONS_00046555-exon-scaffold_113-1575043694:457494..457626 | Clytia hemisphaerica | exon |
| TCONS_00046555-exon-scaffold_113-1575043694:455507..456287 | TCONS_00046555-exon-scaffold_113-1575043694:455507..456287 | Clytia hemisphaerica | exon |
| TCONS_00046555-exon-scaffold_113-1510915933:459044..459481 | TCONS_00046555-exon-scaffold_113-1510915933:459044..459481 | Clytia hemisphaerica | exon |
| TCONS_00046555-exon-scaffold_113-1510915933:457494..457626 | TCONS_00046555-exon-scaffold_113-1510915933:457494..457626 | Clytia hemisphaerica | exon |
| TCONS_00046555-exon-scaffold_113-1510915933:455507..456287 | TCONS_00046555-exon-scaffold_113-1510915933:455507..456287 | Clytia hemisphaerica | exon |
| TCONS_00046555-exon-scaffold_113-1491911889:459044..459481 | TCONS_00046555-exon-scaffold_113-1491911889:459044..459481 | Clytia hemisphaerica | exon |
| TCONS_00046555-exon-scaffold_113-1491911889:457494..457626 | TCONS_00046555-exon-scaffold_113-1491911889:457494..457626 | Clytia hemisphaerica | exon |
| TCONS_00046555-exon-scaffold_113-1491911889:455507..456287 | TCONS_00046555-exon-scaffold_113-1491911889:455507..456287 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_113 | supercontig | scaffold_113:455507..459481 - |
Blast
The following BLAST results are available for this feature:
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