TCONS_00046557 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046557
Unique NameTCONS_00046557
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length510

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046557 ID=TCONS_00046557|Name=TCONS_00046557|organism=Clytia hemisphaerica|type=transcript|length=510bp
CAAGAATTTGCGGTAATTTTATAGTACTTTTTGGCACCTGACAAAAGCAC
TGGACAGTATGTTTGTCGTCAGGGTCATTAAAACTTCTAATATCAAGATT
GCTGGATTTATCAAAGAGAGCTgattcactttcatttttgATGAAtagaa
atgttatttttgttggTGGTCTGGTAGCTGCTATAGGAATAGCATTGGTT
CCTATCTATTTTGTGCCTATGAAACGCCCAGACATATATCaCAACATACA
AAAAGATACACGTAAAGATATTGTACAAGAAGAAGTTCAACCAGGAAATA
TGAAGGTTTGGTCGGATCCTTTTGACAGAAAAAAGGAGTAATTCGTGTTG
ATGATATAAATTATGTACACTGTCTTAAATTAAAAAGTATTGtaatattg
taaatttttttttcaaataattagaCTTTTTGTATATTTAACGCATGATT
TTGGaagtattttattttcatcattacATTGAACCCCTGCCTGAATTGAT
ATTACATTAG
Run BLAST on NCBI

transcript from alignment at scaffold_113:484196..485543-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046557 ID=TCONS_00046557|Name=TCONS_00046557|organism=Clytia hemisphaerica|type=transcript|length=1348bp|location=Sequence derived from alignment at scaffold_113:484196..485543- (Clytia hemisphaerica)
CAAGAATTTGCGGTAATTTTATAGTACTTTTTGGCACCTGACAAAAGCAC
TGGACAGTATGTTTGTCGTCAGGGTCATTAAAACTTCTAATATCAAGATT
GCTGGATTTATCAAAGAGAGCTGATTCACTTTCATTTTTGGTAATTTTAT
TTTTGATAATGTTTCAGCTTCATATACTGGTTTGATTTCAAGTTATATCT
TGGCAATGGGGTGCAGGCTCGTAGTTGCAAGGTTTTGTGTAAAAAATCAA
ACATAGAACATTTTCTGAATTCCTCATTTCTACTGAACCAATAAAAAAGA
AAATATTTTCACACAATTTCTTCAAAATGAATAGATAGGGTACGTTTTTT
AAGGCTTCTCTATAGAATTCTCCTCCTCTGCTCCTGTCCTCATTGGTAGA
AATTCGAAATTTAAAAAATTCTTCACAGAAGCAATCAACAAGAGTGGTTT
GACTTTCGTTTTTGTTGCAGATTTCAATATAACATCACATGGGGAATATT
TTTGTCAAAGTGTTGTGCCAACTTATGTCAGCATTGTATTTTTGAAAAGG
GGAAAAGGAAAGCTTCTAATCCTGAGATAGAAGTTTTAGTCTAAGCTGCC
TACAGTATACTCAACTATCAAAAGCATTTATTCCTCATTTATAGATGAAT
AGAAATGTTATTTTTGTTGGTGGTCTGGTAGCTGCTATAGGAATAGCATT
GGTTCCTATCTATTTTGTGCCTATGAAACGCCCAGACATATATCGTAAGT
CACCGTTTGTGCTTTTTACGAGTTTCTCATTTTGCAATGTTATTAAAAGA
TAAAACAAAACAATTTTAATCATTTTTTGCCCTTTTATGTTGTTTCTTTG
GTCATTATTCTACACGCAGTGAATCTTTTTTTATTGTTTCAGACAACATA
CAAAAAGATACACGTAAAGATATTGTACAAGAAGAAGTTCAACCAGGAAG
TATGTTAAAAGTTTTAAAAATATTATTTTGTTTACTGTTTATACACAAGT
ATATCTTGATTTTTGAAAAGATATCATTTTTTTTACACATTTTCACTTGT
AATGTAACATCTTAGCCAAGAGAGATTCATGAAAATATATCTTCATATAA
TTCATTTTTTTTTGATTTTCTCATTTATGTTATAGATATGAAGGTTTGGT
CGGATCCTTTTGACAGAAAAAAGGAGTAATTCGTGTTGATGATATAAATT
ATGTACACTGTCTTAAATTAAAAAGTATTGTAATATTGTAAATTTTTTTT
TCAAATAATTAGACTTTTTGTATATTTAACGCATGATTTTGGAAGTATTT
TATTTTCATCATTACATTGAACCCCTGCCTGAATTGATATTACATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029707XLOC_029707Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046557-exon-scaffold_113-1575043694:485404..485543TCONS_00046557-exon-scaffold_113-1575043694:485404..485543Clytia hemisphaericaexon
TCONS_00046557-exon-scaffold_113-1575043694:484800..484899TCONS_00046557-exon-scaffold_113-1575043694:484800..484899Clytia hemisphaericaexon
TCONS_00046557-exon-scaffold_113-1575043694:484595..484651TCONS_00046557-exon-scaffold_113-1575043694:484595..484651Clytia hemisphaericaexon
TCONS_00046557-exon-scaffold_113-1575043694:484196..484408TCONS_00046557-exon-scaffold_113-1575043694:484196..484408Clytia hemisphaericaexon
TCONS_00046557-exon-scaffold_113-1510915933:485404..485543TCONS_00046557-exon-scaffold_113-1510915933:485404..485543Clytia hemisphaericaexon
TCONS_00046557-exon-scaffold_113-1510915933:484800..484899TCONS_00046557-exon-scaffold_113-1510915933:484800..484899Clytia hemisphaericaexon
TCONS_00046557-exon-scaffold_113-1510915933:484595..484651TCONS_00046557-exon-scaffold_113-1510915933:484595..484651Clytia hemisphaericaexon
TCONS_00046557-exon-scaffold_113-1510915933:484196..484408TCONS_00046557-exon-scaffold_113-1510915933:484196..484408Clytia hemisphaericaexon
TCONS_00046557-exon-scaffold_113-1491911889:485404..485543TCONS_00046557-exon-scaffold_113-1491911889:485404..485543Clytia hemisphaericaexon
TCONS_00046557-exon-scaffold_113-1491911889:484800..484899TCONS_00046557-exon-scaffold_113-1491911889:484800..484899Clytia hemisphaericaexon
TCONS_00046557-exon-scaffold_113-1491911889:484595..484651TCONS_00046557-exon-scaffold_113-1491911889:484595..484651Clytia hemisphaericaexon
TCONS_00046557-exon-scaffold_113-1491911889:484196..484408TCONS_00046557-exon-scaffold_113-1491911889:484196..484408Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_113supercontigscaffold_113:484196..485543 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.797	10.9605	10.5394	22.6993	11.9609	14.1775	6.96854	14.2339	3.02127	2.2915	2.04036	3.73324	2.92197	2.42102	2.35501	1.64832	4.68304	3.62603	1.22024	0	3.31547	2.09508	10.344	5.11952	10.0518	9.44311	1.46938	0.721075	2.70117	1.72914
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046557 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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