TCONS_00046558 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046558
Unique NameTCONS_00046558
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length438

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046558 ID=TCONS_00046558|Name=TCONS_00046558|organism=Clytia hemisphaerica|type=transcript|length=438bp
GCCCCATCTACATCACACAAAAGAAAATAGGAGTAAACGAGACAATAATG
TTGATGTTATAAAACAAGATGAAtagaaatgttatttttgttggTGGTCT
GGTAGCTGCTATAGGAATAGCATTGGTTCCTATCTATTTTGTGCCTATGA
AACGCCCAGACATATATCaCAACATACAAAAAGATACACGTAAAGATATT
GTACAAGAAGAAGTTCAACCAGGAAATATGAAGGTTTGGTCGGATCCTTT
TGACAGAAAAAAGGAGTAATTCGTGTTGATGATATAAATTATGTACACTG
TCTTAAATTAAAAAGTATTGtaatattgtaaatttttttttcaaataatt
agaCTTTTTGTATATTTAACGCATGATTTTGGaagtattttattttcatc
attacATTGAACCCCTGCCTGAATTGATATTACATTAG
Run BLAST on NCBI

transcript from alignment at scaffold_113:484196..489029-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046558 ID=TCONS_00046558|Name=TCONS_00046558|organism=Clytia hemisphaerica|type=transcript|length=4834bp|location=Sequence derived from alignment at scaffold_113:484196..489029- (Clytia hemisphaerica)
GCCCCATCTACATCACACAAAAGAAAATAGGAGTAAACGAGACAATAATG
TTGATGTTATAAAACAAGGTTAGTATTACGTCGGTATTACGCCAGTACTA
CGTCGGTATTACGCCAGTACTATGTCGGTATTATAAAAATAAATTGGCAT
TGTAAAAAAAGTTGCTATCAAAAATAAAAAAAGTTGGTATCAAAAAAAAA
AAGTTGGTATTAAAAAAAAAGTTGGTATCAAAAAAAAAAAGTTGGTATTA
AAAAAAAAGTTGGTATCAAAAAAAAAAGTTGGTATCAAAAAAAAAAAGTT
GGTATCAAAAAAAAAAGTTGGTATCAATACAAAAAAAAAAAGTTGGTATT
AAAAAGCCTTTTGGCGCGCCATAAAAAAAGTTTAAACCCTTATTTTCTCA
CGCTGGTAACAACAACAAAAAACACTGATGAAACGTCAATGAAAGTAGCT
ATCATTTTTTAGTGTCTCATGTAACTTATGGCATATCCAAAAAGCCATTA
GTTTGGTGCAGAAAATTGGGCGCCTTAGACATATTCATTTATACCTTTTA
AAAAGCGCATTAGGATGTAGAATTCAAAAATTGCTGTTATTAGGCAAAAA
GCAAAAAATTTAATAAACTTTGAGATCCGTGTTGAGATTTGCATGAATTT
GAGTAATTTAGAACCAGCAAGCTTGTCAAGTCTCATCTCCCAGTCAGCGT
GCGTTCAGAAGTTATTCAATTTTACTTTACAAACTCCAAATGTTAAGCAT
CAAACTTTCTTGGTGATAACTTTGCTTATGATGATTGTTTTTTAAAGAAA
ATCTTCAATTAGAGGCATAGATAAAAAAAACAAGATATAACACAGCGTTA
TTTACATTTGTTTCAAGGAGAATGAACACTTTTGACACTTTCATTCACTC
AAAGTTGTTTTAAAGTTTTTTTTTATTTTATGACGGGAAGAGCGCGTAAC
ACATAAAAATATTATGTACTATTCCTCCTAATTAAACAATTTTATCTTAG
TTAGGATAAGTGTTTTATATTTTCTTACTCCGGGCTAATAAGAAGTTTAT
ATTTGGTTAAAAGTTAATGTTCTTTATGTGCATAATTGATTAAAAGAGTA
AAGAAGACGGGGATCGGTATCATTCTTCTAATATTTCAGTTTGAATTTTT
CGCATAGCCTAACTAGGATAAATTATCCTATATATGATAAACATTCTAGC
CTATTTAGGATAAAAGCCTAATTAGGATAATTTATCCTAGTTTGCAATAG
TCCCTGACTGATAAACATGAAATTTGGACCGAAGTTGCATATCATTAATG
GAAACACTTTTGCGTAATTTTCTTATTCAAATTTTGCTGACGTCAACAGA
AATCAGTAAAATACAAATTTTTGTAATAAATTGCTGACATCTACAAAATT
TCAAAAATATTTTTTTTCAAAATGAACCTTTTTAAAGGATGTGCAACTTT
TGTCAAAATTTCATGTTTATACCATCAGCCAAACTGGAGTTATTCAAAAA
CAAGTTTTGCTGACATCAGCATTTTTTGGTTTTTGTCTATTAATAACTTT
TTTGGGTGAAAAATTTAATTTTATTAACAGTGATATTTGAATTCTACATC
CTAATACGCTTCTTTATTAAAGGTATATAAATGAACATGTCTAAGGCCCC
TAATTTTTTGCACCCAACTTATGGCTTTTTGGACATGCCATAAGTTACAC
GAGGTCCTGAAGCTTTACCCCCTCGTTTAACCATTATATCGGCAATACTT
CGTTTATATGGTTAAAAAATGTATTGGTTGCATTTCGCTTGGCCAGCCAT
GTTCCAAAAGCTTTTAAATACCATCAACTAGTTGATCTTGTGTCATCGCC
TTAATGTTCTTTCAGAGATATTTCATTTCAGCCCATCGCATCGATTTCTT
TAGGAGCTTCCCTATTTTTTCGAGCGAAGGGAGTTAAGTAGCACTGCAGG
CAAAGATTTTTCCCTGTTTGCGAAGCATTTTTAGTATTTTGCGATGTTGT
TTGGAAGAAAATGCGAAAGTATCTTCAATTCATTTCTCTAGAAGAGGGAA
GTAAGACTTGAAGTCAGAGATTAGACAAAGCAAAGTATAGTGAAGTTTTG
CAGTAACGAGTAGATAAAGCAATATATAAATGAGTGAATAAAGTTGCAAT
GGACAAACGAGTGAATAAATTAGCGAGGTAGCGAGTTTATAAAGCAATAG
ATAAACGAATGAAGAAAGTAGCCGAGTAGATAAAGAAATAGATAAACGAG
TGAATAAAATAGCGAAGTGACAAGTAGATAAAGCAATATATAAATGAGTG
AATAAAGTTGCAAGTTTTTAAAGCAATAGATAAACGAGTGAATAAATTAG
CGAGGTAGCCGAGTAGATAAAGCAATAGATAAACGAGTGAATAAAGTAGT
GAAGTGGCAAGTTTATAAAGCAATAGATAAACAAGTGAATAAAGTAGCGA
TGTTGTAAGTTTATAAAGCAATAGATAAACGAGTGAATAAAGTAGCGAAG
TCGCAAGTAGAAAGCAATATATAAATGAGTGAATAAATTAGCGAAGTAGT
GAGTTGATAAAGCAATAGAAAAACGAGTGAATAAAGTAGCGATGTTGTAA
GTTTATAAAGCAATAGATAAACGAGTGAATAAAGGAGCGAAGTCGCAAGT
AGAAAGCAATATATAAATGAGTGAATAAATTAGCGAGGTAGCCGAGTAGA
TAAAGCAATAGATAAACTAGTGAATAAAGTAGTGAAGTGGCAATCTCAAG
TAGATAAAGCAATAGTTAAACGAGTGAATAAATTAGCGATGTTGTAAGTT
TATAAAGCAATATATAAATGAGTGAATAAATTAGCGAAGTAGTGAGTTGA
TAAAGCAATAGATAAACGAATGAATAAAGTAGCAAAGTGGCAAGTTGATA
AAGCAATGGATACACGAGTGAATAAAGTAGCAAAGTGGCAAGTTTATAAA
GCAATAGATAAACGAGTGAATAAAGTAGTCAAGTAGAAAAAGCAATATAT
AAACGAGTGAATAAAGTAGCAAAGTGGCAAGTTAATAAGGCAATAGATAA
ACAAGTGAATAAAGTAGCCGAGTAGAAAAAGCAATAGATAAACGAGTGAA
TAAAGTAGCGAAGTCGCAAGTAGAAAGCAATATATAAACGAGTGAATAAA
TTAGCGAAGTAGTGAGTTTATAAAGCAAAAGATAAACAAATGAAAGAAGT
AGCAAAATAGGTGTTTTCTTATAGTTTTTTTAGTTAGGAAATCTTTTTGG
GTCGCTAAATCTAAAATTCACTTCGCATTTTGCGAAGTGCAAAGCTGTAA
TTGCAACCCTGGATATTGTTAGGGAAATGAAAAGCACTTGCATTGAACGA
GTCTGAATAAATTGGATTTCTAACACATATACATTTTGTACTCGCAACGC
GCGAGCCTCGTGCAAACGTAAAGACATGCAAAACCCCCATTGTAGCTAAA
ATGCAAAAAAAAATTATGTGTTAAGAATTTATTTGTCAAGAATTTGCGGT
AATTTTATAGTACTTTTTGGCACCTGACAAAAGCACTGGACAGTATGTTT
GTCGTCAGGGTCATTAAAACTTCTAATATCAAGATTGCTGGATTTATCAA
AGAGAGCTGATTCACTTTCATTTTTGGTAATTTTATTTTTGATAATGTTT
CAGCTTCATATACTGGTTTGATTTCAAGTTATATCTTGGCAATGGGGTGC
AGGCTCGTAGTTGCAAGGTTTTGTGTAAAAAATCAAACATAGAACATTTT
CTGAATTCCTCATTTCTACTGAACCAATAAAAAAGAAAATATTTTCACAC
AATTTCTTCAAAATGAATAGATAGGGTACGTTTTTTAAGGCTTCTCTATA
GAATTCTCCTCCTCTGCTCCTGTCCTCATTGGTAGAAATTCGAAATTTAA
AAAATTCTTCACAGAAGCAATCAACAAGAGTGGTTTGACTTTCGTTTTTG
TTGCAGATTTCAATATAACATCACATGGGGAATATTTTTGTCAAAGTGTT
GTGCCAACTTATGTCAGCATTGTATTTTTGAAAAGGGGAAAAGGAAAGCT
TCTAATCCTGAGATAGAAGTTTTAGTCTAAGCTGCCTACAGTATACTCAA
CTATCAAAAGCATTTATTCCTCATTTATAGATGAATAGAAATGTTATTTT
TGTTGGTGGTCTGGTAGCTGCTATAGGAATAGCATTGGTTCCTATCTATT
TTGTGCCTATGAAACGCCCAGACATATATCGTAAGTCACCGTTTGTGCTT
TTTACGAGTTTCTCATTTTGCAATGTTATTAAAAGATAAAACAAAACAAT
TTTAATCATTTTTTGCCCTTTTATGTTGTTTCTTTGGTCATTATTCTACA
CGCAGTGAATCTTTTTTTATTGTTTCAGACAACATACAAAAAGATACACG
TAAAGATATTGTACAAGAAGAAGTTCAACCAGGAAGTATGTTAAAAGTTT
TAAAAATATTATTTTGTTTACTGTTTATACACAAGTATATCTTGATTTTT
GAAAAGATATCATTTTTTTTACACATTTTCACTTGTAATGTAACATCTTA
GCCAAGAGAGATTCATGAAAATATATCTTCATATAATTCATTTTTTTTTG
ATTTTCTCATTTATGTTATAGATATGAAGGTTTGGTCGGATCCTTTTGAC
AGAAAAAAGGAGTAATTCGTGTTGATGATATAAATTATGTACACTGTCTT
AAATTAAAAAGTATTGTAATATTGTAAATTTTTTTTTCAAATAATTAGAC
TTTTTGTATATTTAACGCATGATTTTGGAAGTATTTTATTTTCATCATTA
CATTGAACCCCTGCCTGAATTGATATTACATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029707XLOC_029707Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046558-exon-scaffold_113-1575043694:488962..489029TCONS_00046558-exon-scaffold_113-1575043694:488962..489029Clytia hemisphaericaexon
TCONS_00046558-exon-scaffold_113-1575043694:484800..484899TCONS_00046558-exon-scaffold_113-1575043694:484800..484899Clytia hemisphaericaexon
TCONS_00046558-exon-scaffold_113-1575043694:484595..484651TCONS_00046558-exon-scaffold_113-1575043694:484595..484651Clytia hemisphaericaexon
TCONS_00046558-exon-scaffold_113-1575043694:484196..484408TCONS_00046558-exon-scaffold_113-1575043694:484196..484408Clytia hemisphaericaexon
TCONS_00046558-exon-scaffold_113-1510915933:488962..489029TCONS_00046558-exon-scaffold_113-1510915933:488962..489029Clytia hemisphaericaexon
TCONS_00046558-exon-scaffold_113-1510915933:484800..484899TCONS_00046558-exon-scaffold_113-1510915933:484800..484899Clytia hemisphaericaexon
TCONS_00046558-exon-scaffold_113-1510915933:484595..484651TCONS_00046558-exon-scaffold_113-1510915933:484595..484651Clytia hemisphaericaexon
TCONS_00046558-exon-scaffold_113-1510915933:484196..484408TCONS_00046558-exon-scaffold_113-1510915933:484196..484408Clytia hemisphaericaexon
TCONS_00046558-exon-scaffold_113-1491911889:488962..489029TCONS_00046558-exon-scaffold_113-1491911889:488962..489029Clytia hemisphaericaexon
TCONS_00046558-exon-scaffold_113-1491911889:484800..484899TCONS_00046558-exon-scaffold_113-1491911889:484800..484899Clytia hemisphaericaexon
TCONS_00046558-exon-scaffold_113-1491911889:484595..484651TCONS_00046558-exon-scaffold_113-1491911889:484595..484651Clytia hemisphaericaexon
TCONS_00046558-exon-scaffold_113-1491911889:484196..484408TCONS_00046558-exon-scaffold_113-1491911889:484196..484408Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_113supercontigscaffold_113:484196..489029 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
42.2107	44.2108	59.8207	50.1363	13.9457	6.45934	15.1405	7.95605	21.0948	18.0103	21.3329	20.5782	12.645	13.0823	14.5868	13.7882	26.6415	28.4921	9.10084	8.96139	15.2646	8.42473	34.0096	23.6318	4.75212	7.18336	8.90269	5.85362	9.17417	9.64041
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046558 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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