TCONS_00046560 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046560
Unique NameTCONS_00046560
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length245

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046560 ID=TCONS_00046560|Name=TCONS_00046560|organism=Clytia hemisphaerica|type=transcript|length=245bp
TGCGGTTGTGTTTCGGTGCCGGTGGATTGTATGTGGGCGCCTGTTGAATG
TGTTGGGGCGCCAGTAGATTGTATGTGGGTTCCGGTAGTTGATTGTGTTT
GCACATTGTTCGAAATATCGAAAGTGTGgactttgtttttctttcttatc
attGCCAAGATGTAGGTATATGTTCCAACGGCGATTAAGAGAAACAGAAT
ATCAAAAGGTAGACAGTGATAGGCGTATAAATCATCAATACTTGT
Run BLAST on NCBI

transcript from alignment at scaffold_113:97298..97542

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046560 ID=TCONS_00046560|Name=TCONS_00046560|organism=Clytia hemisphaerica|type=transcript|length=245bp|location=Sequence derived from alignment at scaffold_113:97298..97542 (Clytia hemisphaerica)
ACAAGTATTGATGATTTATACGCCTATCACTGTCTACCTTTTGATATTCT
GTTTCTCTTAATCGCCGTTGGAACATATACCTACATCTTGGCaatgataa
gaaagaaaaacaaagtcCACACTTTCGATATTTCGAACAATGTGCAAACA
CAATCAACTACCGGAACCCACATACAATCTACTGGCGCCCCAACACATTC
AACAGGCGCCCACATACAATCCACCGGCACCGAAACACAACCGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029709XLOC_029709Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046560-exon-scaffold_113-1491911889:97298..97542TCONS_00046560-exon-scaffold_113-1491911889:97298..97542Clytia hemisphaericaexon
TCONS_00046560-exon-scaffold_113-1510915933:97298..97542TCONS_00046560-exon-scaffold_113-1510915933:97298..97542Clytia hemisphaericaexon
TCONS_00046560-exon-scaffold_113-1575043694:97298..97542TCONS_00046560-exon-scaffold_113-1575043694:97298..97542Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_113supercontigscaffold_113:97298..97542 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	5.51707	0	0	0	0	0	0	5.04593	0	0.552064	1.14665	0.9427	0	0	0.638701	0.8824	4.61684	0	0	0	0.865288	3.56491	3.97699	1.13821	1.21473	0.921331	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046560 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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