TCONS_00046568 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046568
Unique NameTCONS_00046568
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length768

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046568 ID=TCONS_00046568|Name=TCONS_00046568|organism=Clytia hemisphaerica|type=transcript|length=768bp
aaaatttttgaatatgtGATAATAAATCTAGTGGTTCAATGATTTGTAGA
TTTTTGTCATCAAGATGCTCTTGTAAATTATTCCATTGACGTGAAGCTAT
CTGTGTGAGAGATTGGAGGCCAAAGGTGGTTGTATTGACGTTCCTGACAA
AGAGGAGGCTGATATGGTTGGCTCTAGTCCCAATGTCATGAGGAATTGTA
GAAAAGGTAAAAGTAGAAAGACAGTCAGAAGGAAGGTATCTGTTCAGGTA
GCTGTATATGAACATAATGTTGAGTGTTTCAACGAGATCAaagaatttta
agattttaagttcattATAGGTGGGAGTGACAGAAGCCCTTGGTTCTTGG
AAAGTCATAATCCTGATGGCAGTGTTTTGTAGGACTTGGATTCTGTGAGT
TCGACAGTGTTATATCACAGAGGCCCCAAGTTTGACAAGCATAGCGAATG
TGAGAGGAGAAGATAGCATGGTAAACATTGATAAGGTTTGGAAGAGGGAG
ATAGTGACGGAGTTTAGAGATAGCCCCATTTGCACAACGAAGTTTTAcag
caacaacagcaacatgtTGTTTCCAAGAGAGGTGTTCATCAAGATagaca
cctaaatatttaatGGTTTTACTTGGGGTTAAGCGCTTACccgagatttt
gatttttggaattgTATCAAGACGGCGCCTATTGGACCTAAAGATGATAA
ATTCGGTCTTACTAGCGTTAAGCGATATTTTGTTAGCATTCAGCCAGCTG
ACAAGAACTCTGAGGTCA
Run BLAST on NCBI

protein sequence of TCONS_00046568-protein

>TCONS_00046568-protein ID=TCONS_00046568-protein|Name=TCONS_00046568-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
DLRVLVSWLNANKISLNASKTEFIIFRSNRRRLDTIPKIKISGKRLTPSK
TIKYLGVYLDEHLSWKQHVAVVAVKLRCANGAISKLRHYLPLPNLINVYH
AIFSSHIRYACQTWGLCDITLSNSQNPSPTKHCHQDYDFPRTKGFCHSHL
Run BLAST on NCBI

transcript from alignment at scaffold_113:277875..278642

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046568 ID=TCONS_00046568|Name=TCONS_00046568|organism=Clytia hemisphaerica|type=transcript|length=768bp|location=Sequence derived from alignment at scaffold_113:277875..278642 (Clytia hemisphaerica)
TGACCTCAGAGTTCTTGTCAGCTGGCTGAATGCTAACAAAATATCGCTTA
ACGCTAGTAAGACCGAATTTATCATCTTTAGGTCCAATAGGCGCCGTCTT
GATAcaattccaaaaatcaaaatctcggGTAAGCGCTTAACCCCAAGTAA
AACCattaaatatttaggtgtctATCTTGATGAACACCTCTCTTGGAAAC
AacatgttgctgttgttgctgTAAAACTTCGTTGTGCAAATGGGGCTATC
TCTAAACTCCGTCACTATCTCCCTCTTCCAAACCTTATCAATGTTTACCA
TGCTATCTTCTCCTCTCACATTCGCTATGCTTGTCAAACTTGGGGCCTCT
GTGATATAACACTGTCGAACTCACAGAATCCAAGTCCTACAAAACACTGC
CATCAGGATTATGACTTTCCAAGAACCAAGGGCTTCTGTCACTCCCACCT
ATaatgaacttaaaatcttaaaattcttTGATCTCGTTGAAACACTCAAC
ATTATGTTCATATACAGCTACCTGAACAGATACCTTCCTTCTGACTGTCT
TTCTACTTTTACCTTTTCTACAATTCCTCATGACATTGGGACTAGAGCCA
ACCATATCAGCCTCCTCTTTGTCAGGAACGTCAATACAACCACCTTTGGC
CTCCAATCTCTCACACAGATAGCTTCACGTCAATGGAATAATTTACAAGA
GCATCTTGATGACAAAAATCTACAAATCATTGAACCACTAGATTTATTAT
Cacatattcaaaaatttt

Coding sequence (CDS) from alignment at scaffold_113:277875..278642

>TCONS_00046568 ID=TCONS_00046568|Name=TCONS_00046568|organism=Clytia hemisphaerica|type=CDS|length=453bp|location=Sequence derived from alignment at scaffold_113:277875..278642 (Clytia hemisphaerica)
GACCTCAGAGTTCTTGTCAGCTGGCTGAATGCTAACAAAATATCGCTTAA
CGCTAGTAAGACCGAATTTATCATCTTTAGGTCCAATAGGCGCCGTCTTG
ATAcaattccaaaaatcaaaatctcggGTAAGCGCTTAACCCCAAGTAAA
ACCattaaatatttaggtgtctATCTTGATGAACACCTCTCTTGGAAACA
acatgttgctgttgttgctgTAAAACTTCGTTGTGCAAATGGGGCTATCT
CTAAACTCCGTCACTATCTCCCTCTTCCAAACCTTATCAATGTTTACCAT
GCTATCTTCTCCTCTCACATTCGCTATGCTTGTCAAACTTGGGGCCTCTG
TGATATAACACTGTCGAACTCACAGAATCCAAGTCCTACAAAACACTGCC
ATCAGGATTATGACTTTCCAAGAACCAAGGGCTTCTGTCACTCCCACCTA
Taa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029717XLOC_029717Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046568-proteinTCONS_00046568-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046568-exon-scaffold_113-1491911889:277875..278642TCONS_00046568-exon-scaffold_113-1491911889:277875..278642Clytia hemisphaericaexon
TCONS_00046568-exon-scaffold_113-1510915933:277875..278642TCONS_00046568-exon-scaffold_113-1510915933:277875..278642Clytia hemisphaericaexon
TCONS_00046568-exon-scaffold_113-1575043694:277875..278642TCONS_00046568-exon-scaffold_113-1575043694:277875..278642Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_113supercontigscaffold_113:277875..278642 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.30558	0.784568	0.66591	0.502912	1.50782	0.811811	1.59213	1.59217	1.54156	1.46805	1.29371	0.665	0.80442	1.12556	0.859862	1.04414	1.0878	0.389729	0.765384	1.16389	2.15217	2.22892	0.46828	0.47975	2.95978	1.20763	1.20333	0.344872	0.704428	0.734384
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046568 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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