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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046577 ID=TCONS_00046577|Name=TCONS_00046577|organism=Clytia hemisphaerica|type=transcript|length=1587bp
AATTCTATTGCAGATACTGTCTGTTCCAAAATTGGTCCAACCAATCGTCA
CTTCTCTCACTATCTCAAAAATCGCATTAGGAACTCTATTTTTCTTGATC
GTGTTAACCCTGCTGAAGTCTTACTAACAATTAATTCTTTATCCTTTAAC
AAGTCATCTGGCCCTTATAGCATTTCCCCAAAAATTCTTCGTCTTCTAAA
GTTTGACCTCTCTGGAcccctttcttttctttttaacctttcattTGAAT
CTGTTTGTTTCCCCACAATACTTAAACTCTCGAAAGTTATTcccgttttc
aaaaacaaaggctcTCCACTTGCAATATCCAATTATTTCCCTATATCTCT
TCTTTCCAACATAGAGAAAATTCTTGAGAAACTTATGTACTCTCGTCTTA
TTACTTTCTTAGATTCTCATCGAGTATTTTTTGAGCGCCAGTTTGGTTTT
CGTAGATCTCACTCAACCATCCATACCTTACTTAATATTGTTGAACGTAT
TTGGAAATCTCTTGATGATGGTGACTTTGTGTGtggtgtttttgttgatt
tgcaaAAGGCTTTTGACACATTGATCATTCTATTCTAATTTCAAAACTGG
ACCACTATGGGGTTAGAGGAAAGGCTAATGACTGGTTCAGATCATATTTA
TCTAACAGATCCCAGTTTGTCTCTATTTCATCTAATAAATCTTCTATTAA
AATAACCCCCCATGGTGTTCCAAAAGGCTCTGTTCTAGGATCTCTCTTAT
TTTTAATCTATTTAATGATCTTCACAATGCAATCTTTTCaagtgaaactt
ttcatttcGCCGATGATAcccatattttacattttaatgatgATCTTCTT
TCCCTTTGCAACAGAGTCAATCGTGACCTAAGATCCCTCCAAACTTGGCT
CAAAGCCAATAAAATATCCCTTAACGCTGGAAAAACTGAATTCTTAATTT
TCAGACACtgttgaaaaattcttccttttcataaaattggaggtaagaaa
atttttcaaagtttaaatatCAAATATCTTGGCGTTTTGATTGACATGCA
CCTAAACTGGAAAGCCCGCACTACATCTTTATCAGCTAAACTTGCCAGAG
CAAATGGTATTATATCTAAGCTCAGGCACtatgtttcaacaaaaaccTTA
GTTAACATTTATTATGCTCTTTTTCATTCTCATCTTCAGTATGGTTGCTA
ACTCTGGGGTCTTACTGACAATACCACCTCCAAGCCTATATTTATCCTTC
AAAAGAAAGCCTTACGTCTTATTACTTTTAAAAACTCTCGATGCCCTTCT
TCTCCACTCTTTTCTGATCTCAAAATTCTCAAGATCTTTGACCTTGTCAA
ATGCcttaatatatcttttgtccACAGATTCCTAAATAACAAATTACcct
ttgaccttctggagttttttaactttattcagCTCGATGCTGAAGACGAA
AACACTCAAAGTACCAGAGGAGCATGTTTGAAACTACTTTTTGTTCCTTC
CTACAACACCCTTATCTTTGGGAACAAATCTTTCTTTCTAAGTTTTGCAT
AACACATTGGAACAGCATCCAGCGATCTTACCCAAAT Run BLAST on NCBI protein sequence of TCONS_00046577-protein >TCONS_00046577-protein ID=TCONS_00046577-protein|Name=TCONS_00046577-protein|organism=Clytia hemisphaerica|type=polypeptide|length=195bp
NSIADTVCSKIGPTNRHFSHYLKNRIRNSIFLDRVNPAEVLLTINSLSFN
KSSGPYSISPKILRLLKFDLSGPLSFLFNLSFESVCFPTILKLSKVIPVF
KNKGSPLAISNYFPISLLSNIEKILEKLMYSRLITFLDSHRVFFERQFGF
RRSHSTIHTLLNIVERIWKSLDDGDFVCGVFVDLQKAFDTLIILF Run BLAST on NCBI transcript from alignment at scaffold_113:519674..521260 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046577 ID=TCONS_00046577|Name=TCONS_00046577|organism=Clytia hemisphaerica|type=transcript|length=1587bp|location=Sequence derived from alignment at scaffold_113:519674..521260 (Clytia hemisphaerica)
ATTTGGGTAAGATCGCTGGATGCTGTTCCAATGTGTTATGCAAAACTTAG
AAAGAAAGATTTGTTCCCAAAGATAAGGGTGTTGTAGGAAGGAACAAAAA
GTAGTTTCAAACATGCTCCTCTGGTACTTTGAGTGTTTTCGTCTTCAGCA
TCGAGctgaataaagttaaaaaactccagaaggtcaaaggGTAATTTGTT
ATTTAGGAATCTGTggacaaaagatatattaagGCATTTGACAAGGTCAA
AGATCTTGAGAATTTTGAGATCAGAAAAGAGTGGAGAAGAAGGGCATCGA
GAGTTTTTAAAAGTAATAAGACGTAAGGCTTTCTTTTGAAGGATAAATAT
AGGCTTGGAGGTGGTATTGTCAGTAAGACCCCAGAGTTAGCAACCATACT
GAAGATGAGAATGAAAAAGAGCATAATAAATGTTAACTAAggtttttgtt
gaaacataGTGCCTGAGCTTAGATATAATACCATTTGCTCTGGCAAGTTT
AGCTGATAAAGATGTAGTGCGGGCTTTCCAGTTTAGGTGCATGTCAATCA
AAACGCCAAGATATTTGatatttaaactttgaaaaattttcttacctcca
attttatgaaaaggaagaatttttcaacaGTGTCTGAAAATTAAGAATTC
AGTTTTTCCAGCGTTAAGGGATATTTTATTGGCTTTGAGCCAAGTTTGGA
GGGATCTTAGGTCACGATTGACTCTGTTGCAAAGGGAAAGAAGATcatca
ttaaaatgtaaaatatgggTATCATCGGCgaaatgaaaagtttcacttGA
AAAGATTGCATTGTGAAGATCATTAAATAGATTAAAAATAAGAGAGATCC
TAGAACAGAGCCTTTTGGAACACCATGGGGGGTTATTTTAATAGAAGATT
TATTAGATGAAATAGAGACAAACTGGGATCTGTTAGATAAATATGATCTG
AACCAGTCATTAGCCTTTCCTCTAACCCCATAGTGGTCCAGTTTTGAAAT
TAGAATAGAATGATCAATGTGTCAAAAGCCTTttgcaaatcaacaaaaac
accaCACACAAAGTCACCATCATCAAGAGATTTCCAAATACGTTCAACAA
TATTAAGTAAGGTATGGATGGTTGAGTGAGATCTACGAAAACCAAACTGG
CGCTCAAAAAATACTCGATGAGAATCTAAGAAAGTAATAAGACGAGAGTA
CATAAGTTTCTCAAGAATTTTCTCTATGTTGGAAAGAAGAGATATAGGGA
AATAATTGGATATTGCAAGTGGAgagcctttgtttttgaaaacgggAATA
ACTTTCGAGAGTTTAAGTATTGTGGGGAAACAAACAGATTCAaatgaaag
gttaaaaagaaaagaaaggggTCCAGAGAGGTCAAACTTTAGAAGACGAA
GAATTTTTGGGGAAATGCTATAAGGGCCAGATGACTTGTTAAAGGATAAA
GAATTAATTGTTAGTAAGACTTCAGCAGGGTTAACACGATCAAGAAAAAT
AGAGTTCCTAATGCGATTTTTGAGATAGTGAGAGAAGTGACGATTGGTTG
GACCAATTTTGGAACAGACAGTATCTGCAATAGAATT Coding sequence (CDS) from alignment at scaffold_113:519674..521260 >TCONS_00046577 ID=TCONS_00046577|Name=TCONS_00046577|organism=Clytia hemisphaerica|type=CDS|length=588bp|location=Sequence derived from alignment at scaffold_113:519674..521260 (Clytia hemisphaerica)
TTAGAATAGAATGATCAATGTGTCAAAAGCCTTttgcaaatcaacaaaaa
caccaCACACAAAGTCACCATCATCAAGAGATTTCCAAATACGTTCAACA
ATATTAAGTAAGGTATGGATGGTTGAGTGAGATCTACGAAAACCAAACTG
GCGCTCAAAAAATACTCGATGAGAATCTAAGAAAGTAATAAGACGAGAGT
ACATAAGTTTCTCAAGAATTTTCTCTATGTTGGAAAGAAGAGATATAGGG
AAATAATTGGATATTGCAAGTGGAgagcctttgtttttgaaaacgggAAT
AACTTTCGAGAGTTTAAGTATTGTGGGGAAACAAACAGATTCAaatgaaa
ggttaaaaagaaaagaaaggggTCCAGAGAGGTCAAACTTTAGAAGACGA
AGAATTTTTGGGGAAATGCTATAAGGGCCAGATGACTTGTTAAAGGATAA
AGAATTAATTGTTAGTAAGACTTCAGCAGGGTTAACACGATCAAGAAAAA
TAGAGTTCCTAATGCGATTTTTGAGATAGTGAGAGAAGTGACGATTGGTT
GGACCAATTTTGGAACAGACAGTATCTGCAATAGAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046577-exon-scaffold_113-1491911889:519674..521260 | TCONS_00046577-exon-scaffold_113-1491911889:519674..521260 | Clytia hemisphaerica | exon |
| TCONS_00046577-exon-scaffold_113-1510915933:519674..521260 | TCONS_00046577-exon-scaffold_113-1510915933:519674..521260 | Clytia hemisphaerica | exon |
| TCONS_00046577-exon-scaffold_113-1575043694:519674..521260 | TCONS_00046577-exon-scaffold_113-1575043694:519674..521260 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_113 | supercontig | scaffold_113:519674..521260 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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