TCONS_00046587 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046587
Unique NameTCONS_00046587
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1671

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046587 ID=TCONS_00046587|Name=TCONS_00046587|organism=Clytia hemisphaerica|type=transcript|length=1671bp
ATTTATTGTTAGACGCTGGTGTCGATGTGAATTTTGTTGACGAGAACGGC
TTGACGATCCTGATGAAACATTTAACTGGAACGCTGTGTGAAGAACAATA
TACACTTGTCAAACATCTGCTAGAGAAATATCACGCCAATCCTCAGTTGA
CGGATGGCTCAAATTCTAATCTGTTCCATTACCTAGCGCGATCATCGATT
TACACCAATGTTTTGTATGAGCGATATCAAACCATTGACAAAGAAATGAT
GAGCATCTCAATAAAAATCGCTGAACTTTTGTTAAAGGCGGGCGTTGATA
TCAACGGAGTGAGTGATGAGGGCGTTACACCCTTAATTGCTGCAGTTGCT
AATGTAagtagtatttttgaaatttatttccaCTTGATTCGGAATTTCGT
TTTGATAATGAAACCCATATAATATAGTATATACATAGTATATGTATATA
CTATCGGGGAAAACCGGAGAAGTGGGCGAAGAAAAGTGACGGTTTTCTCC
GTTCAATTTTTGCAAGGTATATAGTTATAAAGACCATGATCAGACGATCT
CGTATCGCTCCCGTATggttttcgttacggatcgagagtgttcatattgg
ttttggAACGTTTTAGAGCAAGAAAACGAAGCAATTCGGCTCCGCTAAAA
ATAGTGGAATGGAGCcttttcgatctgttttgctttgtaacgtgtTTTCT
TTTggcgtttcgaattttgacgttaaCACAGTGTTACGGAACGTTTTAAT
TTGGAACGATGTGGAGCCGTAACGTTTGAATATGGTCCAAATATATTTGA
GTATTGACACCTAATTCAATTAGTATTTCTTGTTATTTTAGGAGAACTTT
CCACTGACTGATTTTCTTCTTGAGAATGGCGCATCTGCCACTGTTGGGAA
AACGGAAGATGATAATAAAACTGTATTACATTTCATCGACCAAAACTATG
ACAAAGACCTGTCTGCTTATGTGGTGGATAAATCTTTCACATCAAAGTCA
AACGAGGAATCGGAAAAACGTGGAAAGATGTACAACCATGCTCAACTTGA
GCTTTTGAAAAACCTTCTCAAGCATGGGGCAGGATGTAAACAGTATACGC
AAAGACATGCATTCGTTATTCACGTTCGCTTTATCCCAATCCTACTTAAA
AATCTGTGAAATTTTGTTGGTCGACCCGAACATAGACTTGATGGTGTACG
AGAATAAACACGGTCAAAATGTTTTACACATGATGTTGGGAAAGCTGGAG
CCAGAGGACAAGAAAACTTTTCAATTGTTTCATAATATTCTGAAAAAGTG
TAATTTGACCAAGGAGTTCAGCAACAAGGTAGACAATAACGGTTTCACAC
CTTTGCTATCATTCGTCTACAACATTGCAAGTAAAAACCAGACGGAGAGA
GCTCTACCGCAGTACACCAAACTGGTTAAAACTTTGTTGACAGAATGTTT
CGTTGATACCGATATTCTGGTTCAAAAGAAAGCAATCGGGCCTGACGACA
AGCCTGCTCTACAATACACTTTGTGGCCTAAACCCTCCCTGGATTACGAA
AAATCAGACGAAAATCAAGAAAAGTTCAAAGGTTACAACAGTTTTGGACA
AATGAACATTTTCCATTTACTTGCTATGAAGAATATCAGCCGAGAAGTTA
TGGAGGTGTTTTACAAATATG
Run BLAST on NCBI

transcript from alignment at scaffold_114:108983..113835+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046587 ID=TCONS_00046587|Name=TCONS_00046587|organism=Clytia hemisphaerica|type=transcript|length=4853bp|location=Sequence derived from alignment at scaffold_114:108983..113835+ (Clytia hemisphaerica)
ATTTATTGTTAGACGCTGGTGTCGATGTGAATTTTGTTGACGAGAACGGC
TTGACGATCCTGATGAAACATTTAACTGGAACGCTGTGTGAAGAACAATA
TACACTTGTCAAACATCTGCTAGAGAAATATCACGCCAATCCTCAGTTGA
CGGATGGCTCAAATTCTAATCTGGTAAGTGAcggaccgtagtgcagtggt
agagcatcctgctacggtgcgcaaggttgtgtgCTCAACCCCCAGCTGGG
taataccaaagatttccaaaatgatACTTGATGTTTCCATGCTTGATACT
CAGCAGTTAAGAGaatgatcaagggtaagtggagcaatccatgGAGAAGT
GTTTCCcacccctaccttcgggtagatagctatcgaaagaggggccttcg
ggtcgcctctgggtcgcctccgactgcgatCGCAGACTCACTTACTTAGT
AAGTGAGGGATAAAACTCAATgctgtttcaatgttcatctaacgtaCATT
ACGTTTCTATAACGTACAAGCTGAACGTTGAAACATCATTCAATGTTTGC
TAGCTGCAAAACCTCGAAAAAGTTGACGCGAAGGAAGGGTAGAAACTCTT
GCCTCAAATTTTTCTACTTAAACTTCCTCTGTTTTGTTTAGAATAAAACT
TAGGCCTCTAGTACTTTTTATATTCTTTGATATTCCTCGGCCTTGAACTC
ACAACCTTGCACATCGTAGCTAGATGCTCCAtgattgagtttaaagcctt
tAACGGCAAGAGATGAATCTTCAACATTCTcaagcaaagaaaaatgaaac
ctGAAGATTTGTGTCTCATTTAGAATGACGTTTTTAACCTAGTCTTTTCT
TCGTTTTCGTGcggcaaaaattttcaatttcccatccaggagtatCGTAT
ATAACTCCTTCGGGGCGCTGAAATCAATGACCATGCTACGATTCTCTTCA
TATTACATCAAACTCAAATCGATCATCATTTTATTGTGTTTTCCCTTATG
TATTTCAGTTCCATTACCTAGCGCGATCATCGATTTACACCAATGTTTTG
TATGAGCGATATCAAACCATTGACAAAGAAATGATGAGCATCTCAATAAA
AATCGCTGAACTTTTGTTAAAGGCGGGCGTTGATATCAACGGAGTGAGTG
ATGAGGGCGTTACACCCTTAATTGCTGCAGTTGCTAATGTAagtagtatt
tttgaaatttatttccaCTTGATTCGGAATTTCGTTTTGATAATGAAACC
CATATAATATAGTATATACATAGTATATGTATATACTATCGGGGAAAACC
GGAGAAGTGGGCGAAGAAAAGTGACGGTTTTCTCCGTTCAATTTTTGCAA
GGTATATAGTTATAAAGACCATGATCAGACGATCTCGTATCGCTCCCGTA
TggttttcgttacggatcgagagtgttcatattggttttggAACGTTTTA
GAGCAAGAAAACGAAGCAATTCGGCTCCGCTAAAAATAGTGGAATGGAGC
cttttcgatctgttttgctttgtaacgtgtTTTCTTTTggcgtttcgaat
tttgacgttaaCACAGTGTTACGGAACGTTTTAATTTGGAACGATGTGGA
GCCGTAACGTTTGAATATGGTCCAAATATATTTGAGTATTGACACCTAAT
TCAATTAGTATTTCTTGTTATTTTAGGAGAACTTTCCACTGACTGATTTT
CTTCTTGAGAATGGCGCATCTGCCACTGTTGGGAAAACGGAAGATGATAA
TAAAACTGTATTACATTTCATCGACCAAAACTATGACAAAGACCTGTCTG
CTTATGTGGTGGTAAGTTTTCTCAACCTCGTCTCCGTCGCCTGTGTACAC
CGGTTTAATATCGAAAATAACGTTTATACAGTTGAAGCTCTCTAATTTGA
CGTTCTGCTATTCGATAGGCTCCCTTATTCGATGAAATTTAAAGTccctg
tcaacaagaaactctcataaacgatgctcccttattcgatgaaaatccaa
ttccccttgaagatcgaattagagagcgttaaCTGTACTTGGATACGCCA
GAGAACACTAAGGTTGAAGTTTTATTTGATTTGCTCTTGTTATGAGCAAA
ATTTTTCCTGGTGGTTCTTTATATTGTATGTCTGGTTTACTGTTCTCAGT
TCAAATAGATGAACAATTGCCTTCTATGTCACTCAAAGATTCattttaaa
agccaaaataaCTTGGTTGGAGAGACATGttttttgaaagtaaatttatt
tgattgaatttatatatctaaagaaaattaaaacaagtgTGGTAAATCAA
TGCCATAAGAGTGCTCGAGTAGTTAGGAACCAGAGCcatatatcaatatt
ttaaaagttatctttcattaaaacttaaaaagtgcaTCACTCTGACTTCC
GTGCTCTAATGAAAGTtagaaaaatcttatatataagGATCAAAACACAA
GTAATCACTTTCTTTAGTTCACTCATCTCTCTTAACCATACACTACAcgc
tttttcataagaacatccaaagccTTAGGACTTTCTTAActgtttgagtt
ttaagcctaaaattgttcctaacatgttcttattttcgccagtttttatt
atttttgtcaattttcttaagaaattcgGTGTTTTAAGATTccacaaagc
cttgaaatgttcttaacatgttcttaacattctggccatcgaagccttat
gttcttgtaaaaaaaaaacatgtacatacACAAATGAAACAAACGCTTGA
ACAGGAGGCACATCGACAAAAAAAAGCATTAAGGaataaatttacaaata
gaaatacAACATTCAACAAAGGCACAAATATAAATAAGGGACACGACAAG
ATGAAGACAGATCCTAAAGTCAGATGCGGCCTTGAGTAAGCACCACTGAT
CTTTATATACcatggaccaagtttctcaatcctggcccagcaaaatcttt
gatcagagttttttgaaaagtgatacCCTAAATGGCGGCAATACTCAATA
GCGGTGCAAATgtatcgagagcgctagatctacgtTCCCTTGAATACTTA
TAGATGTAGCGCCGTtaaggccggtttccacttgcCCGCGCTGTGATCGc
atcttttggcttcaatcctttttgcttggaaaaaagattacgtcataaaa
atgtagcgcgccctagaaaaaaaagttgaacacatttcaactttatCCAA
CCGTtacgttacgtcagatcgcaccaatggagttgcttcatttttctttt
gaccaatagcgggTAAGCTCTGTTCGAAAAGTgcaatcgcagcgcgcgca
agtggagaccggcctttagacgTAATTTTTTAACAcaggcttctttgcgg
gtaccaattcaaaaaaaacttcgatcaataAAGGTCCGTGGTGAGCACTA
TCTGCTATTCACGAGTCATCTTTACCAGAAAATCAATTTAATGTTATAAT
ACTGTATTACTTTTCTGTAGGATAAATCTTTCACATCAAAGTCAAACGAG
GAATCGGAAAAACGTGGAAAGATGTACAACCATGCTCAACTTGAGCTTTT
GAAAAACCTTCTCAAGCATGGGGCAGGATGTAAACAGTATACGCAAAGAC
ATGCATTCGTTATTCACGTTCGCTTTATCCCAATCCTACTTAAAAATCTG
TGAAATTTTGTTGGTCGACCCGAACATAGACTTGATGGTGTACGAGAATA
AACACGGTCAAAATGTTTTACACATGATGTTGGGAAAGCTGGAGCCAGAG
GACAAGAAAACTTTTCAATTGTTTCATAATATTCTGAAAAAGGTATCTCA
CGTAGTCTTTCTttcacaaattattttttttcatgtaaCTTCCTATGGAA
GCCGAGAAAGGTCGGTGcgcgaaaatttcaaaaacctgtCGTGATCTTTT
TCAAATTGTCGCAATCTTGAACAGCGACAGCTTGAAAAATATCGTGCTAG
CTTCTGGAAACGCGATTGTTTGAGAATCATCGAATGTCATATAAACATTA
TACTCCATACCGCGAAATTCCtataactcaaacaaatttgtattccccgt
gcgtgttcgagctGTGGAGACTGTAAATTATAtcaatttatattattttc
tttttcaccagTGTAATTTGACCAAGGAGTTCAGCAACAAGGTAGACAAT
AACGGTTTCACACCTTTGCTATCATTCGTCTACAACATTGCAAGTAAAAA
CCAGACGGAGAGAGCTCTACCGCAGTACACCAAACTGGTTAAAACTTTGT
TGACAGAATGTTTCGTTGATACCGATATTCTGGTTCAAAAGAAAGCAATC
GGGCCTGACGACAAGGTTAATTTTCTCATCCATTTTCTTTAGATGCTAGA
CGGGCATTCCTCAAGGTGTCCTGTAACCTATGTACCGGTCAATGTTCTTA
gctaaattattatttttcttattatttaaaaaaaaaaaaatgtcacggtg
gagtgcgttggtttgagttttctagggACTtattattaagctgtgcattt
ttctgatagtggattattattattaaaaatatttctttttcaaaaagtct
ttttcataatgttgatagtttctctttccaaattattttctcaaaaatgt
ttaattttattatcaggtaggtccataaaagtatagctggtgatatcaaa
atcaaaatcttcttaATTCTATATCTTCTACTAGCCTGCTCTACAATACA
CTTTGTGGCCTAAACCCTCCCTGGATTACGAAAAATCAGACGAAAATCAA
GAAAAGTTCAAAGGTTACAACAGTTTTGGACAAATGAACATTTTCCATTT
ACTTGCTATGAAGAATATCAGCCGAGAAGTTATGGAGGTGTTTTACAAAT
ATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029733XLOC_029733Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046587-exon-scaffold_114-1491911889:108983..109155TCONS_00046587-exon-scaffold_114-1491911889:108983..109155Clytia hemisphaericaexon
TCONS_00046587-exon-scaffold_114-1510915933:108983..109155TCONS_00046587-exon-scaffold_114-1510915933:108983..109155Clytia hemisphaericaexon
TCONS_00046587-exon-scaffold_114-1575043694:108983..109155TCONS_00046587-exon-scaffold_114-1575043694:108983..109155Clytia hemisphaericaexon
TCONS_00046587-exon-scaffold_114-1491911889:109991..110793TCONS_00046587-exon-scaffold_114-1491911889:109991..110793Clytia hemisphaericaexon
TCONS_00046587-exon-scaffold_114-1510915933:109991..110793TCONS_00046587-exon-scaffold_114-1510915933:109991..110793Clytia hemisphaericaexon
TCONS_00046587-exon-scaffold_114-1575043694:109991..110793TCONS_00046587-exon-scaffold_114-1575043694:109991..110793Clytia hemisphaericaexon
TCONS_00046587-exon-scaffold_114-1491911889:112453..112774TCONS_00046587-exon-scaffold_114-1491911889:112453..112774Clytia hemisphaericaexon
TCONS_00046587-exon-scaffold_114-1510915933:112453..112774TCONS_00046587-exon-scaffold_114-1510915933:112453..112774Clytia hemisphaericaexon
TCONS_00046587-exon-scaffold_114-1575043694:112453..112774TCONS_00046587-exon-scaffold_114-1575043694:112453..112774Clytia hemisphaericaexon
TCONS_00046587-exon-scaffold_114-1491911889:113094..113297TCONS_00046587-exon-scaffold_114-1491911889:113094..113297Clytia hemisphaericaexon
TCONS_00046587-exon-scaffold_114-1510915933:113094..113297TCONS_00046587-exon-scaffold_114-1510915933:113094..113297Clytia hemisphaericaexon
TCONS_00046587-exon-scaffold_114-1575043694:113094..113297TCONS_00046587-exon-scaffold_114-1575043694:113094..113297Clytia hemisphaericaexon
TCONS_00046587-exon-scaffold_114-1491911889:113667..113835TCONS_00046587-exon-scaffold_114-1491911889:113667..113835Clytia hemisphaericaexon
TCONS_00046587-exon-scaffold_114-1510915933:113667..113835TCONS_00046587-exon-scaffold_114-1510915933:113667..113835Clytia hemisphaericaexon
TCONS_00046587-exon-scaffold_114-1575043694:113667..113835TCONS_00046587-exon-scaffold_114-1575043694:113667..113835Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_114supercontigscaffold_114:108983..113835 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0754685	0.735084	0	0	0	0	0	0.064092	0.379744	0.0413989	0	0	0	0	0	0	0	0.0659968	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046587 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top