|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046591 ID=TCONS_00046591|Name=TCONS_00046591|organism=Clytia hemisphaerica|type=transcript|length=650bp
TCAGGTGAGACAAACGAATTGCACAGTGCAGGTCCTTCAACTTCTCAGGA
TACAGATGATACTATTGATCTTCAATACTTCACTTCCAATCATGAATTGA
AAACTGCAATCGCAAATTACGAGATAAAAACCATTACCCGATATAATGTA
CTCAACAgtacaaaaaattttgatgaagatgTATCCCTGGAAAagtattt
gaaaaatcaaatgaagATCAAGAAAAAACTTCCCTTTGTCAGATGGGAGA
TGAATCAGAGAAATGACAAGCTGCCACTCAAATTCACAGGAACTCCGTAT
ATCTGGGTTGGAACTAAAAACTATATATGCCATCAAGGCCAAgataagaa
cattcgaaggaaAGAAAAGCTTAAAGGACAAGCTGCAGCAAATTTTGCCA
GCAAAGGAGATCATCCCCAATACTCCAAAGTGAGAAGAAACATTCGCCct
acgaaaaaaaaacattgttcgGTTAGTTTCGCAgttaaaaaactattttt
attccCTGAATATGCCACAGACAGACGACAGCAGAAAGAGAGGAGAGGGG
ATGTGCATGTGACCATCCATATTTAATGATAGCATTGGTTATTTGTTGTT
ATTACTATTGAATTTATTCCTGATGTTCATTAGGATCAACAAAATTGGCA Run BLAST on NCBI protein sequence of TCONS_00046591-protein >TCONS_00046591-protein ID=TCONS_00046591-protein|Name=TCONS_00046591-protein|organism=Clytia hemisphaerica|type=polypeptide|length=191bp
SGETNELHSAGPSTSQDTDDTIDLQYFTSNHELKTAIANYEIKTITRYNV
LNSTKNFDEDVSLEKYLKNQMKIKKKLPFVRWEMNQRNDKLPLKFTGTPY
IWVGTKNYICHQGQDKNIRRKEKLKGQAAANFASKGDHPQYSKVRRNIRP
TKKKHCSVSFAVKKLFLFPEYATDRRQQKERRGDVHVTIHI Run BLAST on NCBI transcript from alignment at scaffold_114:138411..139538+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046591 ID=TCONS_00046591|Name=TCONS_00046591|organism=Clytia hemisphaerica|type=transcript|length=1128bp|location=Sequence derived from alignment at scaffold_114:138411..139538+ (Clytia hemisphaerica)
TCAGGTGAGACAAACGAATTGCACAGTGCAGGTCCTTCAACTTCTCAGGA
TACAGATGATACTATTGGTATGAAGTCTTGAATTATTTATAAGTGAAAGA
CAGTTGTAGAACTCCAATATGACCGACCCCCCGAAACGATAGTgctgaat
gtaaaaaatgtgtCTGTCTCCACGACCATTAGCTCAACCGACATATGTAT
GAGAACTATTATTTTACACTGAATATGATGTGGTCACTTCTCGGGACAAG
CAGCACATCTTGGTTGGGGCTGATTGAGGCTGTACTTACAACAATTAATA
TATACGCCCAAATTTAATTTCAGATGATACGCTGTAGTTGAGACAATCtc
taaaataattataaaatctTATTATTTAAATCTTTACATTTAGATCTTCA
ATACTTCACTTCCAATCATGAATTGAAAACTGCAATCGCAAATTACGAGA
TAAAAACCATTACCCGATATAATGTACTCAACAgtacaaaaaattttgat
gaagatggTATGTTTCAAGAAGCTCTATTCTCATAATGTTATATATCATT
ATCTTAAAGATATATGTGAAGAAAAGGggcccaaaaattaaaaaagtcga
GGGGATTGATCTGCTACTGACATTCatctatttttttaatttgatctcCA
ATTTTTTAGTATCCCTGGAAAagtatttgaaaaatcaaatgaagATCAAG
AAAAAACTTCCCTTTGTCAGATGGGAGATGAATCAGAGAAATGACAAGCT
GCCACTCAAATTCACAGGAACTCCGTATATCTGGGTTGGAACTAAAAACT
ATATATGCCATCAAGGCCAAgataagaacattcgaaggaaAGAAAAGCTT
AAAGGACAAGCTGCAGCAAATTTTGCCAGCAAAGGAGATCATCCCCAATA
CTCCAAAGTGAGAAGAAACATTCGCCctacgaaaaaaaaacattgttcgG
TTAGTTTCGCAgttaaaaaactatttttattccCTGAATATGCCACAGAC
AGACGACAGCAGAAAGAGAGGAGAGGGGATGTGCATGTGACCATCCATAT
TTAATGATAGCATTGGTTATTTGTTGTTATTACTATTGAATTTATTCCTG
ATGTTCATTAGGATCAACAAAATTGGCA Coding sequence (CDS) from alignment at scaffold_114:138411..139538+ >TCONS_00046591 ID=TCONS_00046591|Name=TCONS_00046591|organism=Clytia hemisphaerica|type=CDS|length=1728bp|location=Sequence derived from alignment at scaffold_114:138411..139538+ (Clytia hemisphaerica)
TCAGGTGAGACAAACGAATTGCACAGTGCAGGTCCTTCAACTTCTCAGGA
TACAGATGATACTATTGATCTTCAATACTTCACTTCCAATCATGAATTGA
AAACTGCAATCGCAAATTACGAGATAAAAACCATTACCCGATATAATGTA
CTCAACAgtacaaaaaattttgatgaagatgTATCCCTGGAAAagtattt
gaaaaatcaaatgaagATCAAGAAAAAACTTCCCTTTGTCAGATGGGAGA
TGAATCAGAGAAATGACAAGCTGCCACTCAAATTCACAGGAACTCCGTAT
ATCTGGGTTGGAACTAAAAACTATATATGCCATCAAGGCCAAgataagaa
cattcgaaggaaAGAAAAGCTTAAAGGACAAGCTGCAGCAAATTTTGCCA
GCAAAGGAGATCATCCCCAATACTCCAAAGTGAGAAGAAACATTCGCCct
acgaaaaaaaaacattgttcgGTTAGTTTCGCAgttaaaaaactattttt
attccCTGAATATGCCACAGACAGACGACAGCAGAAAGAGAGGAGAGGGG
ATGTGCATGTGACCATCCATATTTAATCAGGTGAGACAAACGAATTGCAC
AGTGCAGGTCCTTCAACTTCTCAGGATACAGATGATACTATTGATCTTCA
ATACTTCACTTCCAATCATGAATTGAAAACTGCAATCGCAAATTACGAGA
TAAAAACCATTACCCGATATAATGTACTCAACAgtacaaaaaattttgat
gaagatgTATCCCTGGAAAagtatttgaaaaatcaaatgaagATCAAGAA
AAAACTTCCCTTTGTCAGATGGGAGATGAATCAGAGAAATGACAAGCTGC
CACTCAAATTCACAGGAACTCCGTATATCTGGGTTGGAACTAAAAACTAT
ATATGCCATCAAGGCCAAgataagaacattcgaaggaaAGAAAAGCTTAA
AGGACAAGCTGCAGCAAATTTTGCCAGCAAAGGAGATCATCCCCAATACT
CCAAAGTGAGAAGAAACATTCGCCctacgaaaaaaaaacattgttcgGTT
AGTTTCGCAgttaaaaaactatttttattccCTGAATATGCCACAGACAG
ACGACAGCAGAAAGAGAGGAGAGGGGATGTGCATGTGACCATCCATATTT
AATCAGGTGAGACAAACGAATTGCACAGTGCAGGTCCTTCAACTTCTCAG
GATACAGATGATACTATTGATCTTCAATACTTCACTTCCAATCATGAATT
GAAAACTGCAATCGCAAATTACGAGATAAAAACCATTACCCGATATAATG
TACTCAACAgtacaaaaaattttgatgaagatgTATCCCTGGAAAagtat
ttgaaaaatcaaatgaagATCAAGAAAAAACTTCCCTTTGTCAGATGGGA
GATGAATCAGAGAAATGACAAGCTGCCACTCAAATTCACAGGAACTCCGT
ATATCTGGGTTGGAACTAAAAACTATATATGCCATCAAGGCCAAgataag
aacattcgaaggaaAGAAAAGCTTAAAGGACAAGCTGCAGCAAATTTTGC
CAGCAAAGGAGATCATCCCCAATACTCCAAAGTGAGAAGAAACATTCGCC
ctacgaaaaaaaaacattgttcgGTTAGTTTCGCAgttaaaaaactattt
ttattccCTGAATATGCCACAGACAGACGACAGCAGAAAGAGAGGAGAGG
GGATGTGCATGTGACCATCCATATTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046591-exon-scaffold_114-1491911889:138411..138477 | TCONS_00046591-exon-scaffold_114-1491911889:138411..138477 | Clytia hemisphaerica | exon |
| TCONS_00046591-exon-scaffold_114-1510915933:138411..138477 | TCONS_00046591-exon-scaffold_114-1510915933:138411..138477 | Clytia hemisphaerica | exon |
| TCONS_00046591-exon-scaffold_114-1575043694:138411..138477 | TCONS_00046591-exon-scaffold_114-1575043694:138411..138477 | Clytia hemisphaerica | exon |
| TCONS_00046591-exon-scaffold_114-1491911889:138804..138917 | TCONS_00046591-exon-scaffold_114-1491911889:138804..138917 | Clytia hemisphaerica | exon |
| TCONS_00046591-exon-scaffold_114-1510915933:138804..138917 | TCONS_00046591-exon-scaffold_114-1510915933:138804..138917 | Clytia hemisphaerica | exon |
| TCONS_00046591-exon-scaffold_114-1575043694:138804..138917 | TCONS_00046591-exon-scaffold_114-1575043694:138804..138917 | Clytia hemisphaerica | exon |
| TCONS_00046591-exon-scaffold_114-1491911889:139070..139538 | TCONS_00046591-exon-scaffold_114-1491911889:139070..139538 | Clytia hemisphaerica | exon |
| TCONS_00046591-exon-scaffold_114-1510915933:139070..139538 | TCONS_00046591-exon-scaffold_114-1510915933:139070..139538 | Clytia hemisphaerica | exon |
| TCONS_00046591-exon-scaffold_114-1575043694:139070..139538 | TCONS_00046591-exon-scaffold_114-1575043694:139070..139538 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_114 | supercontig | scaffold_114:138411..139538 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029309 | CaRF |
Blast
The following BLAST results are available for this feature:
|
