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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046613 ID=TCONS_00046613|Name=TCONS_00046613|organism=Clytia hemisphaerica|type=transcript|length=1743bp
AAGACATTTATCTGGCAGAGGAGATATTGGCAGAGAAAAAGATCGGGAAG
ACATCTTACTACTTGGTGAAGTGGGCTGGATGGGGAACTGAAGACAGTAC
TTGGGAACCAAGAGAAAATTTGTTGGATGAGCGGTTACTGCAATTATGGG
AAACACCAGTGGTAGACTTGAGGCAAGTTGAATTTTTCGCTGAACGTCTC
CTTACTTGTTTTGAGGCTTCCCTAAAAGAAAGGTTGAAAAGCGTCAAGCA
GCTTGATTTCCCAGTTGCTATTTTCAGATATCTCTTCAACGGTAGGGGGG
AGGATTTAGCAAGGGGTTCGAAGTTATTGCAAAAACATGACTTTGACCCT
CAATAGTTCCCTAAGAATTGGCATTCAAGTCTCATAAACAAGCGAGGGAC
AAGGAGAGATATCGTTTTTCCTGTCACAATACGTTGCTTTTTGTCGAAGT
CTCCGAAGCTATTCCAGACTTCAAACTCTGGTGAGGTGGAAGACAAAAAG
CAACGTTTGACGCAGAGAATTTCGGTCACTATTTTTAAGGACAcagtaaa
tttttgataaatgtaATTTTAGTTAGGTTTAATATTTAAAGAAATATATC
TACTGATCATGCAAGTTTCTGCTGGTCACACGAACAAAGTGAGAAATATA
ATAGACGTGTAAAGGCTAGTtctttttttgtcttcaataaATTGGGATAA
CTGTTTGCTAACTTTTATTCACTATttacattatttttctttcatataTG
GTAAATTTCGAGATCAATCCTCTGTTTGATGGTACGTCCTCTTTTGTCGT
TCAAATCCACCCTCCTgtaagtggggggcgtacgagggttgccaacaccg
aaataccgacagatCTTTCTTAAATCACCGCAATACCGACAAAACTTTAC
CTAAAACACCAACACCGACGTTTTAGAGCAAGCTTAAGATTTTTATTCTT
AGTACGAATGCTCAATATCACGAGCGTAGTAGTGCACTAGTTCAGTTTTT
CTTGGAGTAAACTATCGCGGATTCAAGGGTTTCAAATCTTTAAACCTCAG
TTCTTCAACGACTAGTGGATAAACAAATCCAGAAAGACAGCATAGGGAAC
GCTTTGAAGGGTTTAAAGTGctatttaaaacgtttttaaaagATCTTTGC
AAAAAAACGAGGGAACAAAGGGATATCTGAATGTAAGTAATGGaggagga
ggcgcaaccatggttgcGCCGACGGAGAAAACTTTTCCATTTTTGTCCTC
TCGTTTAGCTAAAAGAGATCTTTTTTAACGTTATTAGAAGTAAATCTTCc
ttacacaggaaaaaatcttaaaatcccaTGCtaggaaaatggccattttc
cacccggaaaatggccattttccggGGTGGGATTTGCCCCGGGAAAGTGA
GACGTCTCCTAGGCAAATCCCACCctggaaaatggccattttccatGCTT
AGACTTTTCAAATTCAGGGCGGAAAATGGTCATTTTCCATGCTTGGACTT
TTCAAATTCAGGGcggaaaatggccattttccatGCTTGGACTTTTCAAA
TTCAGGGTGAAAAATGACCATTTTCCATGCTTGGACTTATAGCCACGCTC
ACTCTCATCAACACTCAAAATCGCGGTGTTTTCAGAGTTTGTGTTTTCGA
AATCTGAAGGTTTTTGACTATCCCCTTTGCGTGAAATAACCACTTGTGGT
GCAGAATTTTGTGGATTCGAAATTGcaaattttgcttcaaaaa Run BLAST on NCBI protein sequence of TCONS_00046613-protein >TCONS_00046613-protein ID=TCONS_00046613-protein|Name=TCONS_00046613-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
DIYLAEEILAEKKIGKTSYYLVKWAGWGTEDSTWEPRENLLDERLLQLWE
TPVVDLRQVEFFAERLLTCFEASLKERLKSVKQLDFPVAIFRYLFNGRGE
DLARGSKLLQKHDFDPQ Run BLAST on NCBI transcript from alignment at scaffold_115:32068..34135+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046613 ID=TCONS_00046613|Name=TCONS_00046613|organism=Clytia hemisphaerica|type=transcript|length=2068bp|location=Sequence derived from alignment at scaffold_115:32068..34135+ (Clytia hemisphaerica)
AAGACATTTATCTGGCAGAGGAGATATTGGCAGAGAAAAAGGTTAGTGTT
TTGTTTGTCTGGACAAAGTTCTTGTGGGTTGTAAGTGCATGCTTTTACTA
TGGAAAATCCTTTTATCCCTTCCATTAATATTTGCCTATTTTCTTGTGTA
GATCGGGAAGACATCTTACTACTTGGTGAAGTGGGCTGGATGGGGAACTG
AAGACAGTACTTGGGAACCAAGAGAAAATTTGTTGGATGAGCGGTTACTG
CAGTAAGTAACACAGTTGTTTATGCCTTGTTCTTGAGCGTAGATTTCCCA
AAGATAGGATGGAGGCCACTTATTCTGGAAATTgagatttataaaaaaat
cttttttgacgaAGGGGGTGGCCTTAAAGGGGCCTTAAAGTGAATTTAGT
AGATTTTCACTTGCACGATTCAGGCATGATTTCAAGATTTTAAGAATCAC
ATTCGTTTGATTTATAGATTATGGGAAACACCAGTGGTAGACTTGAGGCA
AGTTGAATTTTTCGCTGAACGTCTCCTTACTTGTTTTGAGGCTTCCCTAA
AAGAAAGGTTGAAAAGCGTCAAGCAGCTTGATTTCCCAGTTGCTATTTTC
AGATATCTCTTCAACGGTAGGGGGGAGGATTTAGCAAGGGGTTCGAAGTT
ATTGCAAAAACATGACTTTGACCCTCAATAGTTCCCTAAGAATTGGCATT
CAAGTCTCATAAACAAGCGAGGGACAAGGAGAGATATCGTTTTTCCTGTC
ACAATACGTTGCTTTTTGTCGAAGTCTCCGAAGCTATTCCAGACTTCAAA
CTCTGGTGAGGTGGAAGACAAAAAGCAACGTTTGACGCAGAGAATTTCGG
TCACTATTTTTAAGGACAcagtaaatttttgataaatgtaATTTTAGTTA
GGTTTAATATTTAAAGAAATATATCTACTGATCATGCAAGTTTCTGCTGG
TCACACGAACAAAGTGAGAAATATAATAGACGTGTAAAGGCTAGTtcttt
ttttgtcttcaataaATTGGGATAACTGTTTGCTAACTTTTATTCACTAT
ttacattatttttctttcatataTGGTAAATTTCGAGATCAATCCTCTGT
TTGATGGTACGTCCTCTTTTGTCGTTCAAATCCACCCTCCTgtaagtggg
gggcgtacgagggttgccaacaccgaaataccgacagatCTTTCTTAAAT
CACCGCAATACCGACAAAACTTTACCTAAAACACCAACACCGACGTTTTA
GAGCAAGCTTAAGATTTTTATTCTTAGTACGAATGCTCAATATCACGAGC
GTAGTAGTGCACTAGTTCAGTTTTTCTTGGAGTAAACTATCGCGGATTCA
AGGGTTTCAAATCTTTAAACCTCAGTTCTTCAACGACTAGTGGATAAACA
AATCCAGAAAGACAGCATAGGGAACGCTTTGAAGGGTTTAAAGTGctatt
taaaacgtttttaaaagATCTTTGCAAAAAAACGAGGGAACAAAGGGATA
TCTGAATGTAAGTAATGGaggaggaggcgcaaccatggttgcGCCGACGG
AGAAAACTTTTCCATTTTTGTCCTCTCGTTTAGCTAAAAGAGATCTTTTT
TAACGTTATTAGAAGTAAATCTTCcttacacaggaaaaaatcttaaaatc
ccaTGCtaggaaaatggccattttccacccggaaaatggccattttccgg
GGTGGGATTTGCCCCGGGAAAGTGAGACGTCTCCTAGGCAAATCCCACCc
tggaaaatggccattttccatGCTTAGACTTTTCAAATTCAGGGCGGAAA
ATGGTCATTTTCCATGCTTGGACTTTTCAAATTCAGGGcggaaaatggcc
attttccatGCTTGGACTTTTCAAATTCAGGGTGAAAAATGACCATTTTC
CATGCTTGGACTTATAGCCACGCTCACTCTCATCAACACTCAAAATCGCG
GTGTTTTCAGAGTTTGTGTTTTCGAAATCTGAAGGTTTTTGACTATCCCC
TTTGCGTGAAATAACCACTTGTGGTGCAGAATTTTGTGGATTCGAAATTG
caaattttgcttcaaaaa Coding sequence (CDS) from alignment at scaffold_115:32068..34135+ >TCONS_00046613 ID=TCONS_00046613|Name=TCONS_00046613|organism=Clytia hemisphaerica|type=CDS|length=1062bp|location=Sequence derived from alignment at scaffold_115:32068..34135+ (Clytia hemisphaerica)
GACATTTATCTGGCAGAGGAGATATTGGCAGAGAAAAAGATCGGGAAGAC
ATCTTACTACTTGGTGAAGTGGGCTGGATGGGGAACTGAAGACAGTACTT
GGGAACCAAGAGAAAATTTGTTGGATGAGCGGTTACTGCAATTATGGGAA
ACACCAGTGGTAGACTTGAGGCAAGTTGAATTTTTCGCTGAACGTCTCCT
TACTTGTTTTGAGGCTTCCCTAAAAGAAAGGTTGAAAAGCGTCAAGCAGC
TTGATTTCCCAGTTGCTATTTTCAGATATCTCTTCAACGGTAGGGGGGAG
GATTTAGCAAGGGGTTCGAAGTTATTGCAAAAACATGACTTTGACCCTCA
ATAGGACATTTATCTGGCAGAGGAGATATTGGCAGAGAAAAAGATCGGGA
AGACATCTTACTACTTGGTGAAGTGGGCTGGATGGGGAACTGAAGACAGT
ACTTGGGAACCAAGAGAAAATTTGTTGGATGAGCGGTTACTGCAATTATG
GGAAACACCAGTGGTAGACTTGAGGCAAGTTGAATTTTTCGCTGAACGTC
TCCTTACTTGTTTTGAGGCTTCCCTAAAAGAAAGGTTGAAAAGCGTCAAG
CAGCTTGATTTCCCAGTTGCTATTTTCAGATATCTCTTCAACGGTAGGGG
GGAGGATTTAGCAAGGGGTTCGAAGTTATTGCAAAAACATGACTTTGACC
CTCAATAGGACATTTATCTGGCAGAGGAGATATTGGCAGAGAAAAAGATC
GGGAAGACATCTTACTACTTGGTGAAGTGGGCTGGATGGGGAACTGAAGA
CAGTACTTGGGAACCAAGAGAAAATTTGTTGGATGAGCGGTTACTGCAAT
TATGGGAAACACCAGTGGTAGACTTGAGGCAAGTTGAATTTTTCGCTGAA
CGTCTCCTTACTTGTTTTGAGGCTTCCCTAAAAGAAAGGTTGAAAAGCGT
CAAGCAGCTTGATTTCCCAGTTGCTATTTTCAGATATCTCTTCAACGGTA
GGGGGGAGGATTTAGCAAGGGGTTCGAAGTTATTGCAAAAACATGACTTT
GACCCTCAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046613-exon-scaffold_115-1491911889:32068..32108 | TCONS_00046613-exon-scaffold_115-1491911889:32068..32108 | Clytia hemisphaerica | exon |
| TCONS_00046613-exon-scaffold_115-1510915933:32068..32108 | TCONS_00046613-exon-scaffold_115-1510915933:32068..32108 | Clytia hemisphaerica | exon |
| TCONS_00046613-exon-scaffold_115-1575043694:32068..32108 | TCONS_00046613-exon-scaffold_115-1575043694:32068..32108 | Clytia hemisphaerica | exon |
| TCONS_00046613-exon-scaffold_115-1491911889:32219..32319 | TCONS_00046613-exon-scaffold_115-1491911889:32219..32319 | Clytia hemisphaerica | exon |
| TCONS_00046613-exon-scaffold_115-1510915933:32219..32319 | TCONS_00046613-exon-scaffold_115-1510915933:32219..32319 | Clytia hemisphaerica | exon |
| TCONS_00046613-exon-scaffold_115-1575043694:32219..32319 | TCONS_00046613-exon-scaffold_115-1575043694:32219..32319 | Clytia hemisphaerica | exon |
| TCONS_00046613-exon-scaffold_115-1491911889:32535..34135 | TCONS_00046613-exon-scaffold_115-1491911889:32535..34135 | Clytia hemisphaerica | exon |
| TCONS_00046613-exon-scaffold_115-1510915933:32535..34135 | TCONS_00046613-exon-scaffold_115-1510915933:32535..34135 | Clytia hemisphaerica | exon |
| TCONS_00046613-exon-scaffold_115-1575043694:32535..34135 | TCONS_00046613-exon-scaffold_115-1575043694:32535..34135 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_115 | supercontig | scaffold_115:32068..34135 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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