TCONS_00046692 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046692
Unique NameTCONS_00046692
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2879

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046692 ID=TCONS_00046692|Name=TCONS_00046692|organism=Clytia hemisphaerica|type=transcript|length=2879bp
CAAGCCCATCGGTATAAAAGACGTTTCATTCGATTTTGAAGATTGCACAG
GACAGATCAACTGACAAGAATGGCAGCAAATAATCCTGTGcCAAAGATCT
ATCGTGCTGTCATTGAAGATGTCATCAAAAATGTTCGGGAATCATTTCTC
AATGAGGGGGTGGATGAGGCTATTCTCAACGAGCTCAAGCAGcTCTGGGA
AAACAAGTTACAACAATCAAGAGCCATAGATGTTATTCCTTCTGATGTGA
ATGTACGAGTCAGTCTAACGTATCCACATAGCTCACAAACAGCTGCAAGC
TCTACACAATCCTCACTACCTACCACTGTGCAGCCAGCTCCAAAACCTGC
TGCCCGTCCGCAAGCAACGGCTGTGGCACCTACAACAACCCCAACACAAA
CTGTTTTTAGAAATGCAGCTGGCCAGCAGCAACAAGTTGTTTATGTTAGC
AATCATCCAACTCTTGGTCATGTTGGGCCCATGACTGGAGCTGCAGTTCA
AGCAACAATGGCTTTGCAAAATGCTGCAGCTGCTGCGGGCAGGGGACAAC
CCCAGGCAATCATTCGACAACCTATCATGGGCATGCCCGGTCAGGTTATA
GTCCAGGCCCAGCCTGGAGCACCTAACAttTATCAACACTTTCAAGGACA
TGTTGCAGCAGTCGGTCAGCGAGTGATATACGCTCCAGCGACTGCTACTC
CTGCTACAGTTGCTGCTGCAGCTGCCCAACCTGCACAAATTCAAGCTGCA
CAACAACAGCAAGCTGCAGCTGTTGCTGCTGCACAACGAACTCAACAGGT
AGCAGCAGCACAAAGAACTCAACAGATAGCAGCAGCACAAAGAGCTCAGC
AAGCAGCTGCAGCGGCAGCAGCAGCTGGACAAAAGGTGAATTTTCATTTC
AGTCATCTTCAGTTATTGATAAAAGAACATAACTTGCCTAGCCTTATTAC
TTCAAAAAGTGCAAGTTTGACGAGGATACATCatccataatttttttctg
gtgAAAAGAACTCTTGTAATATCTAACAAACTGATCAGGTCTATGCAACT
TCAGGCATTCTTTCATTccagctcaactgaagttgagaatagggCAGTTG
TAGTATAggtaaatctttttttaattatctCTTTATTTTCCAGCCACCTA
ATCGTAACATAGTCCAAGTAGATGGAGCAAATGATGAACAAGAAACGTGC
TGCTCCCCAACGACCtcgacctctacaaaaccaagGCAACAACCTAGATG
TCGAAAACCATCCAAAGAAATTATACTACAGTTTGACGGACCAAATGATT
CAGATTCTGAGGATGAAGAAGAGGAAGAGGAAGAAGATTTTGACAATGTG
GACATCCCGGTGGCTGCCGGTGGTATTAGCGGTGGGGGTGTTGATATAGA
TGAACCTGGGGAGGAAGAGGAACCGTTAAATTCTGAAGATGACGTCACTG
ATGATGAAGAACAAGCTGATTTGTTTGACACGGATAATGTTGTTGTTTGT
CAATATGATAAGATTGCAAGAACTCGGAATCGTTGgaaatttcatttgaa
agacGGTATAATGAATTTGAACTCTAAAGACTTTGTTTTTCATAAGGCCA
ATGGCGATGCCGAATGgtgatttgttttcatttgatgAAAATTGGTTTTG
TTGCTCCCAATGTGTAGAATACTATTTTCACGATGGGGGCCGGTCGCTGA
AAATTACTTGGTCACATTGATTATTATGTCATTGTAGTAGACGCAAACAA
TCACAAAGAACTATCACAAACACGTTGTCTTATAATGATCGTCTTTGAAT
TGGCTCCGAGAGggaaaatttgttaaaaacaaCTGAAACTTGGGatatat
atttctatgtttAAGAAAATCTATAAGAACTGATTAACCTCGACTAATTA
GACTAACAAGCAAGTGTTTCTTTTCGAAAACACTCAATTTTGAAAGAATG
GATTACCAGCACAAGTTTTGAGTTTTATGGGCTGTTttacttttgtgttt
ttttttcagattttgttttTAGGGTAGATAACTTTATTTCCTTTCATGAA
ATTTTAATAGAGTGTAAAAAATGTTGTAGTCTCGTTGTAGATTTGTCATA
CTTTATTGAATACTATATACTGtagggctcttccagaaaaaaatttgaat
atggctggtggaggatataatacttttttgaaaacttgccCCAGCGCCCg
aacattgtgacttttgacccacCGGACAGCATGCCTAACCCCCAAACAAG
CACTAGTTGACCCCCGGACATGCNACTTTTGACCCACCGGACAGCATGCC
TAACCCCCAaacaagcattagttgacccccggacatgcaaaattaccctc
aaacagagcaaataTACTCCCACtcccatgtacgaacattttctggaagg
gCCCATAGGTCCATAGAATGATATAGTATCATACATGAGTAAAAAGGAAA
TAATGTTCTTTAAAGTGCCAGCCAATTCAACCAACGCTTTATATACGGAA
AACTTAATTGACACTGAGTGGTTGCAACTAGCTTTTCggctttgaaaatt
tggaatttttaaaCTTGAGTGctaaatgttattttttttttttttaactt
ttgtgtTAGCATCCCTGTTGTTTTATTTTGGTTGACCTTTTTCGGACATG
AATTATTATAAAATACATAAATGAATATTTAGCTTCAATCAATTTgcgtt
ttgtaattttttatagaaaattttaatttctaaacattttattttttctt
tggttAATAATGAATATAATAAAGTATTTAAatagataaaataaatttaG
CCAAAAAAACATTGCATTTTTTGTCCATGTTCTCAAATTTCCGTTAAAAA
TGGTTAGATTTAACTATTTAACGTAGGTG
Run BLAST on NCBI

transcript from alignment at scaffold_116:51758..65258-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046692 ID=TCONS_00046692|Name=TCONS_00046692|organism=Clytia hemisphaerica|type=transcript|length=13501bp|location=Sequence derived from alignment at scaffold_116:51758..65258- (Clytia hemisphaerica)
CAAGCCCATCGGTATAAAAGACGTTTCATTCGATTTTGAAGATTGCACAG
GACAGATCAACTGACAAGAATGGCAGCAAATAATCCTGTGGTAAATGCTT
AGTCTTTCTGTCCGAAGAGTATTCTATTTGCTACCTCTTTTGTTTCAGTT
TTTCGTGGAGAAAGGTGTGTAAAAACTTTCTCCTTTGATATGTCTTCCTG
CTGTTTAATGAATTAAAAAAAAATCACTTCTTTATCTTTACCTGATCTGA
TGATATATAGACATTACAAAATGCAGTTTTTATTTATCCAATTCGTGCCA
CACAAATTTTGGTTGAATACCATTCAAGAATTTAAGTCATTGTTTTTATA
TCTAATAGTAAAAATTGTTGGAAACCTGGAAAACCTCAATTTTTCTTCAA
AAACACACTTGGGGGTCTTCGACAAAAAACTTTCGAAATTTTTATCGGCA
TTGGGCCGATAAGCTTCAGACCCCCTCCCCCCCTTGCTCTTATCGGCCAA
AATTTTTCAAATCCAACTTTTACATCTTCGAAAACACAATTTCCTCCAAT
CTTGTCCGCCATCGCCTTCCCCCCCGTCATCGTTGAATTTTTGTCTATTT
GTGCACCAACATTGAGTTTGTTCATACCCGCATTGATATTGTTAATCAAA
ACGAAAGATAAAATGACTGGATGAAGTCGCAACATTTCGAAGGAAAAGGC
AGCGCGCTGGCCGATGAAAAAGAGTTTTTTATCAAAGCTATTTCAAAACT
GTACTTTTAAAGTTGCGAATTTGCACGCAAAAGTGAAAGCACCAAGTGAA
ATCATATGCTTTCAGTGGAGTTAGTGGACGAAATCAGAAAGAAATTGGCT
GAAAGGATTTTCGTCTCAATACTTGTTTTTTTATCGGTATGTAGTTGGAC
CCCCCCACCCCCTTATCGGCCCAATGCCGATAAAAAATTCGAAAGTTTTT
TGTCAAAGATCCCTTGACTGCTTGATAACTCTTGCAAAAACTGTGAGATT
TGACTTGTGACATAAATTTACAGAAAGCCCATGTTAAATAATTTGTAAGG
GTGCCTACTTTTGGAAAATTTGGGGAAAAAGTAGAAAATTTGAGAACATT
TTGGAATGTTAGTCCAATTCAGGGTCACTTTTTTCGCAAATTTCGAGTCC
CACGTACGGTCCATTTTTCGAAGCTCAGCGGAGCACCCCCGTCGGTCGAC
AAGGGTAGTACCCCCGCCCCCTTGGGTGTTAACCTCCACTGGTGCAAGTT
ACCCACTCTCACGGTAAGTATTATATTCCAACGCCAGGACAGCAATTATT
AGATAACTACCAAAAAACCAGGCGTACCCAATCGATGAAATCGATACNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNGAGGGATAAGGCTGGGACAATCTA
TTTAAAAGATATGGACAAAAAAAGGCACTTTTTTGGGTGATAATTAAGAT
TTTACTTAGAAACTTTAATTCTCTTAGCTTACCCCCATCTCGNATCGATA
CGGGAAATCAATCGATATTAATCAATTTTAATCGATAATAATCGATAGTG
ATCGATAACTAATCGATAAACAATCGATAGCCAATTGATACTAAGACTTT
ACGTTCTTATCGATTGGATTCGATTGTTATCGATTACTATCGATTAATCG
CNCCTGATATGAGCAAGGGAACCATGTTGGCCACCCCTACTGAAAATTTC
AGATCAAAACAAACAAGGAATTAATTCCTGTAACTCAAAGAAAATTGGAA
AAAGCTGTTTTTTGACTGTTTTCGATCCTTTTTTGGTAAAAGCTATGCAA
TTTATGTTTGTATTTCTAGAAATCTTACCCATTCATTGTCAATACATTTT
TTATTTGAAAGTAATCTCTTCATGGAATAAAAAGATACTAGCCGGTACCC
GGCGTCGCACGCCCGTTTAGGTGTTTGCTGAACGCATTTAAAGTCATTTG
GATGTTGGGAAGGTGGCTTAACTGGGCTTAAACACGATGAAATCAAAATT
AAAGGGAAANACAATTAATTACGATATTCAAGTGTTTTAAGTACGCGTTA
AAGGCTTGTGTAATATATATTACATATAGATCGTATAATGTATTAACAAG
CACTAGCCGGTACCCGGCGTCGCACGCCCCTTTAGCTGTTTGCTGAACGC
ATTTAAAGTCATTTGGATGTTGGGAAGGTGGCTTAAACACGATGAAATCA
AAATTAAAGGGAAGAATTCTCTTCAAAGTTTGACTCTATCCCTCCCATAT
TTTGAAAAAGATTTTTGTGGCAAAAATGATCAGTAAGCAGGAAGGGCGTC
ATTCCCAAATTACACCATACCGGCGACCAGCAATGTTCGAGACGGCTCTG
CAATAAGATTTTTTTCTCGCTTCGTTCGCGTTACATTTGCTGTAGTTCTT
GATGTTTAGGAAAACTTTGATGTCAAGATAAGCGGAGTGAAATAATAGAC
ATGACACGAGTCGAAAAAAGGCAGCCCGGGGCAAGAGAAGGGTATGGGTA
TGTGTCGGCCTTAAGGGTGCCTTTTTTGAAACATGGCAGTTTGAAAAATC
GGAAAATCAAACTTCAGTCCCACTAACAATCGGAAAAATAGGAAAATTTC
AACTTTTTGTCACCAGAAAGATAGAAATTTGGTCAAATTAGTACCAAAAA
GTGAATTAAAATTCACACAATTTCCCTTGTTTCTTCTCATCTTTATTCTG
CTAAGGGTCTGAGGGACAGGGCCGAAAGTCAGCTCGCAACCATAGTCCCC
CCGGAAGGCAGCTAGGACACGCAGACAAAAAAGCGTGATAGCGCAATTTT
ATGTTGCTTTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNGATAACTTTTCAAATTCAACAATGACTTAGATTTACA
GCAAAATAATTATCGACATAGATGTTTAAAGGTCCCTTTTTACGAAGAAA
GAACTCTAGTTTTTACCGCCGTTTGAATTTATTTTTAATGTTGCTGTTGT
TCTAACAAACTTGTCTTGTGATTCTTATGTCTTGTTTTATATTTGTTCTT
TTCTTTAACAGATTCTGTTTAAAAGATTTTCTTTTGTTTTGAAAAGAATT
CGAATGTCTCAAATCAAATAAGGTCGTTAATTACATTCGAAAACATAAAA
CAAAAAAAAAGAAAGAAAAAAAAAGNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTCTAAT
CTATCAATCAAAACAAAGTCTTTATAAAACGGCGCGAATCTGATTCAACA
CATTTGTGGAGCAAGAAGCAAAAGTCATCTTTTAAAAGAACAAAACATTG
CTTGCGAAAACGAAAGTGACACACAAAAAACAAACAAACATACATACAGA
CTACGGCTATTAATATATAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT
TTCTTGTCCAAGGCTTGATCACGCGTAATAATTAGAGTGAAATTAATTAT
GCAGAATTTTGGCTACGCGTTAATAATTAGAGTAAGATTAATTACAATTT
TTTGCAAAAAACAGGGTACGCGTTAAATTAGACTACGCGTTAAATTAGAA
AAACCACGGTACATGGTATTTGGCCATTCCTATTCCCCTGTGCATTAATC
CGATTAATACAGTGATTTGTTTGTGTGATTCTACCCAAGCCCTGGTCGCC
AAGAGGGTTAGAATTGCGGGAAATTCGGCCATCGAGATAGTTATTCGGTC
GGTGGATAGTCGTCCACCGACCGGTGGAAAATTGGTCGTCAGAATAGTCA
TCCGGTCGTCGAAATACTTTATTGCATGAAAATTTCGCGGTTTAGCGGTC
GAGTTCAGAAAGCCGCGAAATTAAAATGCCGCGAAAAACAATTTTGGAGC
TCAACCGTGAAATTAAAATGCCGGGAAATGTGATTTTTTGGGTCAACTGA
AAAAAAACCCTAAAAGTAGAGTCTTTTTTGCAAAAAAATGCAATAATCAA
GACAAAATTCTCTTGGACCGCGAAATTAAAATGCCGCGAAATGTGATTTT
TTGGGTCAACTGAAAAAAAACCCTAAAAGTAGAGTCTTTTTTGCAAAAAA
ATGCAATAATCAAGACAAAATTCTCTTGGACCGCGAAATTAAAATGCCGC
GAATTGCAATTTTGGGCAAAAAAAACGCGAAATTAAAATGATCGCAAAAT
TTTCATGCCGCGAAATTTTCATGCAATAAAGTATATAGTTACCCGGTCGG
CGAAATGGCCGTCCGGATGGCGGAAATCTTATATCCGGCCGGCAGAAAAT
ATACTGTCAGAATAGTCACCGGCCGTTGGAATAGTCATCCGGCCAACGGA
AAATTGGCCGTCGGAAAAGTTATACGGTCAGCGGAAATAGAGGCCGAGCT
AGTTTTTTTCGAGCTAGTTTTATTTCGGCGGTCGGACAACTATTATTATT
ATTAAATTCCCGTGAAACTTCAGAATTTTGAGCTCTGAACCGCGAAATTA
AATTCCGCGAAAATTTCTTCCCGCGGAAATTTCTTCCCTTAAAGTACGCT
ACGATATTATCGTGAGATACACTCTGGTACACAGACTAGCGATCATACAT
ACAGAAAATTAGCACAATCGATCGCAATCGATCTTAATCGATAACAATCG
CATTCAATCGATGGCTAATCGATAATAATCGAATTTAATCGGTGAAAATC
GACACCAATCGATAATAAAATTTTACGTTCCTATCGATTGGCCATCGATT
AGTAATCGATCGATCATCGATTAGTAATCGATCGATCATCGATTACGAAC
GACTTTTATCGATTGACATCGATTAAATCAACAATCGATGTTATCGATTG
GGTACGCCTGGAAAAAAGAAGTTAAGATACTAATTTTAAACCAGACCCAA
TCAATCAGTTACATCAATATGCCAAAAACATTTTGTTCAACCACCTTCAC
TTCAAGATAGGCCACCATAGAATGAACTTCCTTTTATAGGATGAACCATA
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCACT
CCATCACAGAGCCTATTTGAGATATTTTACTAACTAGCCCAGAGAAAAAT
TTTAAACCTTTATTATTTGAATGCATGCCTTTTTGATACTCAAATATAAA
AAAATTAAAAAATTTAAACTCTGCGATGGAGTGCAAGGCTGAAAGCCACA
TGAATATGGTTCATACTATAAAAGGAACTTCATTCTATGGTGCCCTATCT
TGAAGTGAAGGTGGTTGAACAAAATGTTTTTGGCATTGATGGAACTGTCA
ATCGGACTTGTCGAACCAATCAAACAATCGAACTCCATCGAACAATAATT
AAAGTTCGAACTTGGTAAAATTAATCAAACCTAATCAAACACTCACAATT
TTTGAAGAACTTGTCGAACAAAATTGGATTTATATCGAACTGATCGAAAC
GCAACCCATTGATCGAACTTAACCGAACACTCACAATTTTGTTAAAAAGC
TTAGAGTTCGATTAATTTTGGGCTTTCAAGCAGACTTGCCAACATGAAAT
ATTACCGTCAACTGCTCTAACTTGGGACGATTGGTCGAAACATGGGACTG
TTAGGGGAGCGCCGTCCATATTCATTTGACAACGCAAAACGTCAAATTGA
CGTTGTGAAGGGATGGGGGGGGGTTTCAAAAGTTAGGTTTGATGTTATAA
GAAATCAAAGGTATACCTTTTTGTGAAAATCGCGAATATTTGTAACCACC
AACCACACTATACTTTATAAGCTTTCGAAAATATATTCGAGTATGAATTA
CATGAAAATTTGTTGCTCGCATAATCCCATTGGTTCGCGCTATGATATCA
TTACATCATATTTTTATTTTTTGAGAGGATAACGTCAATTTGACGTTATG
CGTCGTCAAATGAATATGGACGGGTCCCCTTACCGTGAAGTCGGGTAACT
AGCATCAGTGGAGGCAAACATGCATAGCCATCAAATGACTGACCAATCAA
AGCAGCAAAATTTCAAAACAAATGAACTACGCAGCTCCGCTCGCTACTCT
ACTCTACCATTTTTTTTTTGATTTAATTTTAATGACCAGGCAGGTCATTC
ATTTTAGGGCTATGCATGTTTGCCTCCACTGATGCAAGTTACCCGACTTC
ACGTTAATATCCTGGCCTGTATTTTCACTTACTGTTAAATCTCTTTGACA
ACAAATTTGTTTTGATAACTCCACCAAGTTTATCAATCATACTTTCTGTC
ATAACATGTCACGATAACTTTTACTGATAGCGCACCCTTTTTAACTTTAC
CTATCGTAAGTTGGTCTAATTCCGACACCATTTTTTAGAGACAGAAATAA
TATGAAAGCTTGAATCACTGATTGAAAAAGAATAATTCTCTCTGGCCATT
AAGCAAAGAAAAACAGTTTCAACCTTTCTATCTATTTCAGCTGATAATTG
TGGGGGGAAATTTGTTCGTTTTTTTGAGGTCGCTCAATTTTTTTAGTCAA
AGCACTTGTTATACATTTTTGGAAAGCTAAGGGGTAGTGGAATCAAAATA
ACTTGGGTATACCTGTTGTATATTTTTGGAAAGCTCTCAAAAAATTTAAA
TTAGAGATATATTGCAAATATAGGCGATTTCTGTACCTAACTTGAGATAT
TAACCCTTAAAAACAGTGTTTTTCAGCCAGAAACAGCTGTTTTGTTCAGT
TTTTGCGCTTCTGGAAGCTCGATATCTCGAGTTAGGTACTGAAATCACCT
ATACTCACCTTATAATTGATAAATTATGAAAATATAGCCTACTGTAAGGT
ATTTTCCTTCACATCCGCAACCCCAAAAAAACAATCCCAAAAGCTTTAAT
TCAAGTTTTGAAATTTAGAGGGACCCATGGGTGAGGAGGAGCTGCTTATT
AAAAAATGTGTAGTAAAGAATTTTGATTATTGATTTTCAGTTTTGAACTA
TTTATAACTTTTTAATAGTCATTCTTTGATTATCTTTTTTTCTTGATTTT
AGCCAAAGATCTATCGTGCTGTCATTGAAGATGTCATCAAAAATGTTCGG
GAATCATTTCTCAATGAGGGGGTGGATGAGGCTATTCTCAACGAGCTCAA
GCAGGTAATTGCATGCAAATGTCTAACTTCACCAAGATTCACCAAGTTTG
TTGCAATACTTTTTTAATTACCAGATAAGTTTGATATAATAAATCATTTT
TTTGAATAGTTTTTAATTGAATAGAATTGAAGGAACTCAGAAAATGAGTG
ATCTTATTATGATGTTCTTTGAAGGAACTTAATCCGGCACATTTTATTAA
AATCTATAGGATATCTGAAATTATATTTTCTTTTCAGCTCTGGGAAAACA
AGTTACAACAATCAAGAGCCATAGATGTTATTCCTTCTGATGTGAATGTA
CGAGTCAGTCTAACGTATCCACATAGCTCACAAACAGGTAAAAATTACCA
CAGGGAAATCACAGGGAAAGACAGGGATTGCCTAAGGGTATTACAATTTA
CATCTGTACGATAACTAAATTTCAGATTTCTAAAGCTTAAAAATTAGTCG
AGTCAGAAAGAGTGATACATTTTCTATCTAATCCTTATTTCAATGTATGT
ACTTGTTTTATAATTTAAAAATCTTGTCTCATCAATATTAAACTTAATAA
ACAAATTTATACAACATTCTATCAATTTACTCCAGCTGCAAGCTCTACAC
AATCCTCACTACCTACCACTGTGCAGCCAGCTCCAAAACCTGCTGCCCGT
CCGCAAGCAACGGCTGTGGCACCTACAACAACCCCAACACAAACTGTTTT
TAGAAATGCAGCTGGCCAGCAGCAACAAGTTGTTTATGTTAGCAATCATC
CAACTCTTGGTCATGTTGGGCCCATGGTATGTTCTAGTTCATGTAGGGAA
GAACCAGTGGGGTCCACGATTTATGAGCTATAAAATTTAATCAGTGAGTT
ATAAGATATGTGAGATATATCCTTGCAGATCCTTGTGTTATGCATTATGA
TTTCATTCTGAGAAGTCTTTTGGTTTAATTTCTCAATGGTCCCACTTATT
TTTACCACAGACTGGAGCTGCAGTTCAAGCAACAATGGCTTTGCAAAATG
CTGCAGCTGCTGCGGGCAGGGGACAACCCCAGGCAATCATTCGACAACCT
ATCATGGGCATGCCCGGTCAGGTTATAGTCCAGGTGAGTAAAGTCCTTCA
TTAGTTTTTGTTTCAAGGATGGCCTTTAAAATTTCAAACCCTAGGTTTTT
GAAGCTAGATCGGTCAGTAAATGAATTTTATTGATAGATTTATCATTCTT
ACAAGGCAACAGTTAATTAAACCTTACTGTTGAATTATTTCTTTTCAAAA
CAAAGATGGCCACTCAAAACTTTCCCTGAATTGTTTCCCATTGTTGTGCT
CTTATATGGTTAAGATAGTTTAAAGTGATTTAGAACACACACTTTCTTTA
TAAGAATATGCTAAGAATATCACCATCATGGGAAATATGCAACAGAACCT
AAGAATGCCATTTTAGAACATTTTAAATGTCTGTCCCTCCTCAAAACATT
AACAAAAATGTAATTTTATGCTTCAGGTATTACCAGGTATTAATTGTTGG
ATTTAGGTCCTAACCTAAGAATACCATATTGAATATTTTTAAGATGATTC
TCCTCGAAAAGTTGAGAATATCCATGATGACTATATGACTAAAAAAGTGT
GAGTGGATAAAATGAAAAAAAAAAATTTTGGGGGGGGGGTAAAAATCCAC
TCACCATGATGATATTTTATTAACTTAGCAAAGTAATTTACTTTTTGTAC
ATTTTTATTTTACAGGCCCAGCCTGGAGCACCTAACAGTAAGTATTGTTT
TAAGATTATAAGTCTATAGTATATTTGATATTTTTAAGTCCTGTTAAATG
TTTTAGCTCTTTCACAGACACTTTTGTGTATTTAAACTTTGAAACTGAGA
CATTTGGTAAATTATATATGTTTACCTCTTCTTCTTTTTTTAGTTTATCA
ACACTTTCAAGGACATGTTGCAGCAGTCGGTCAGCGAGTGATATACGCTC
CAGCGACTGCTACTCCTGCTACAGTTGCTGCTGCAGCTGCCCAACCTGCA
CAAATTCAAGCTGCACAACAACAGCAAGCTGCAGCTGTTGCTGCTGCACA
ACGAACTCAACAGGTAGCAGCAGCACAAAGAACTCAACAGATAGCAGCAG
CACAAAGAGCTCAGCAAGCAGCTGCAGCGGCAGCAGCAGCTGGACAAAAG
GTGAATTTTCATTTCAGTCATCTTCAGTTATTGATAAAAGAACATAACTT
GCCTAGCCTTATTACTTCAAAAAGTGCAAGTTTGACGAGGATACATCATC
CATAATTTTTTTCTGGTGAAAAGAACTCTTGTAATATCTAACAAACTGAT
CAGGTCTATGCAACTTCAGGCATTCTTTCATTCCAGCTCAACTGAAGTTG
AGAATAGGGCAGTTGTAGTATAGGTAAATCTTTTTTTAATTATCTCTTTA
TTTTCCAGCCACCTAATCGTAACATAGTCCAAGTAGATGGAGCAAATGAT
GAACAAGAAACGTGCTGCTCCCCAACGACCTCGACCTCTACAAAACCAAG
GCAACAACCTAGATGTCGAAAACCATCCAAAGAAATTATACTACAGTTTG
ACGGACCAAATGATTCAGATTCTGAGGATGAAGAAGAGGAAGAGGAAGAA
GATTTTGACAATGTGGACATCCCGGTGGCTGCCGGTGGTATTAGCGGTGG
GGGTGTTGATATAGATGAACCTGGGGAGGTGAGTGAATGAATCAATTTGA
TCTGCCTTGATTGGGGTTTTTTAAATTTCTTTCTAACAGTCATATTTTAA
TGATCTTGGTTTAGCCCAAAATTTCATTGGTCTTTTACTGCACTATGTAA
AACGGGAAGCAGCAGGAAGTGGTAATTTATAATTACTATCAATTCCTCAA
ACTCCAAAGTTCCGCTGTGCTGCAATATCCTGCAACATTCCACAGGCATA
ATAAAAGGTGGAAGGTCTTGTTAGGTGCTTAAAACAGACATAATATCAAG
AAGGGGCACCAGTAGGTTGTAAGTTGGACTTTTGTATAGAGTTCTGAAGA
GACGCTCAATAAAAAACCAAGCAATTCAACATCCTGCAATTCAAAATTTC
CACACATGTGTTTTGTTTACTATCATGTTAAGGAAGAGGAACCGTTAAAT
TCTGAAGATGACGTCACTGATGATGAAGAACAAGCTGATTTGTTTGACAC
GGATAATGTTGTTGTTTGTCAATATGATAAGGTATTTCTTAATTAGTGAA
ATCTTATTTGAAGTACTTTATTCTTGCAAGGAAAGTTGTTCCCTTAAAGT
ATCAGAGGCTTTTGTGATTTTCAGGACTGCAGAAAGTATACATGGGTCAC
AACTCAAAAATTAGATTACCCCCTTTGGACTTTTTTAACCTACCTCCGGG
TACCCCGGTGGAGGTCCTATAAATTAACCGTTGTCCCGTTCGTTCGTTCG
TCCGTTCGTCTTTTACCAGCTTTTCTCTAGTCTAGCAAGCTAGACGACTA
ATTTATACATAGTAGAAATAAAGCAAAAAATAATGAATGGAACAATTTTA
GTCGTCTAGAAACCTTTGTGCACTAACTCCAAACAAAAGAAAAGTGTCAA
TATTGCAATTATAATCTTTTCCTGCTCAAAATAATTCTTGAGAAAAAAAA
TATGTTTGGATTTGTGTATTGAAAGTTTTTCATTTGAGTTTATTTCGTTT
CGAGAGTTTGTTGTTGCTTGATAAATTGTTTTCTCGCTACGCAAGTTTCT
GCGTAGCTAGCCGGGGTATCTATAAGGCTGGAACACCGGATTCTTCCAGT
CGTTTATACAAACTAAATCCCGTATTATTATTATTATTAGTATTGGTATT
ATTAGTATTACACACATTATAAACGACTCCAGTCTAGCTTTTCTCGAGAT
TTGCTCATTAGTTTTTTCTGATTTTTGGCACAAAGATGCAAAATGGCAAT
GGCCAAAATGTGACGGAGCCTGATTTTCGAAAAAAAAGATTTTGCCGGAA
AAACTTGTTTTTTTGGCATTTTCTCGAGATTTTATCATTATTTTTTCTGA
TTTTTTGCTCAAAGAAGCGTATTAACAATGCCCAAAACATGGCCGAGTCC
GATTTTTGAGAATTGTTTTTTTTTCTGGGTTTTCATTGGACTTTTTCCTT
ATAATTGGCTGATTTTTCATTCAAAAACATTATTAATAGCAATGCCCACC
ATCAAGCATGTTTCAATTTTCAATAAAACTGATTTTTGAGACCAGAACTT
TCTATTTATTTTTTCCCCTACAACCCTTCCCTCTCCCCCCATCAACAATC
AATGATGAATTTATTGCGTTATGTATTTTCACTAAACTCTATGTTTTCTG
ACCGATTTTTTCATTTTTGGACCTACCCCGGTCCTATAAATTAACCTACT
CAATTTTTTAATGAGATAGATGTTTTTTTTTTGCTCACGAAGTCTTGAAT
ATGAAAGATTATNCGCTATATTTTCTGACTGATTTTTTTCATTTTTGTCC
TCACATTGCTATCTAACTTTCATCATCAGGTAGGTCCATTCAGCATCTAG
CTTGTTTCGTTTATTGTGTCATTTATTCCAATTAAATTAGGTTGTATGGA
TTCTTCACAGTTTTATTTACTTTGCGAGTGGTGTAACATTATTTTGATTT
CTAAATTTTTCTTTACAATTTTTCTGCTTTCTAGATTGCAAGAACTCGGA
ATCGTTGGAAATTTCATTTGAAAGACGGTATAATGAATTTGAACTCTAAA
GACTTTGTTTTTCATAAGGCCAATGGCGATGCCGAATGGTGATTTGTTTT
CATTTGATGAAAATTGGTTTTGTTGCTCCCAATGTGTAGAATACTATTTT
CACGATGGGGGCCGGTCGCTGAAAATTACTTGGTCACATTGATTATTATG
TCATTGTAGTAGACGCAAACAATCACAAAGAACTATCACAAACACGTTGT
CTTATAATGATCGTCTTTGAATTGGCTCCGAGAGGGAAAATTTGTTAAAA
ACAACTGAAACTTGGGATATATATTTCTATGTTTAAGAAAATCTATAAGA
ACTGATTAACCTCGACTAATTAGACTAACAAGCAAGTGTTTCTTTTCGAA
AACACTCAATTTTGAAAGAATGGATTACCAGCACAAGTTTTGAGTTTTAT
GGGCTGTTTTACTTTTGTGTTTTTTTTTCAGATTTTGTTTTTAGGGTAGA
TAACTTTATTTCCTTTCATGAAATTTTAATAGAGTGTAAAAAATGTTGTA
GTCTCGTTGTAGATTTGTCATACTTTATTGAATACTATATACTGTAGGGC
TCTTCCAGAAAAAAATTTGAATATGGCTGGTGGAGGATATAATACTTTTT
TGAAAACTTGCCCCAGCGCCCGAACATTGTGACTTTTGACCCACCGGACA
GCATGCCTAACCCCCAAACAAGCACTAGTTGACCCCCGGACATGCNACTT
TTGACCCACCGGACAGCATGCCTAACCCCCAAACAAGCATTAGTTGACCC
CCGGACATGCAAAATTACCCTCAAACAGAGCAAATATACTCCCACTCCCA
TGTACGAACATTTTCTGGAAGGGCCCATAGGTCCATAGAATGATATAGTA
TCATACATGAGTAAAAAGGAAATAATGTTCTTTAAAGTGCCAGCCAATTC
AACCAACGCTTTATATACGGAAAACTTAATTGACACTGAGTGGTTGCAAC
TAGCTTTTCGGCTTTGAAAATTTGGAATTTTTAAACTTGAGTGCTAAATG
TTATTTTTTTTTTTTTTAACTTTTGTGTTAGCATCCCTGTTGTTTTATTT
TGGTTGACCTTTTTCGGACATGAATTATTATAAAATACATAAATGAATAT
TTAGCTTCAATCAATTTGCGTTTTGTAATTTTTTATAGAAAATTTTAATT
TCTAAACATTTTATTTTTTCTTTGGTTAATAATGAATATAATAAAGTATT
TAAATAGATAAAATAAATTTAGCCAAAAAAACATTGCATTTTTTGTCCAT
GTTCTCAAATTTCCGTTAAAAATGGTTAGATTTAACTATTTAACGTAGGT
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029793XLOC_029793Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046692-exon-scaffold_116-1575043694:65169..65258TCONS_00046692-exon-scaffold_116-1575043694:65169..65258Clytia hemisphaericaexon
TCONS_00046692-exon-scaffold_116-1575043694:57755..57856TCONS_00046692-exon-scaffold_116-1575043694:57755..57856Clytia hemisphaericaexon
TCONS_00046692-exon-scaffold_116-1575043694:57422..57521TCONS_00046692-exon-scaffold_116-1575043694:57422..57521Clytia hemisphaericaexon
TCONS_00046692-exon-scaffold_116-1575043694:56983..57173TCONS_00046692-exon-scaffold_116-1575043694:56983..57173Clytia hemisphaericaexon
TCONS_00046692-exon-scaffold_116-1575043694:56676..56798TCONS_00046692-exon-scaffold_116-1575043694:56676..56798Clytia hemisphaericaexon
TCONS_00046692-exon-scaffold_116-1575043694:56022..56043TCONS_00046692-exon-scaffold_116-1575043694:56022..56043Clytia hemisphaericaexon
TCONS_00046692-exon-scaffold_116-1575043694:55081..55865TCONS_00046692-exon-scaffold_116-1575043694:55081..55865Clytia hemisphaericaexon
TCONS_00046692-exon-scaffold_116-1575043694:54578..54676TCONS_00046692-exon-scaffold_116-1575043694:54578..54676Clytia hemisphaericaexon
TCONS_00046692-exon-scaffold_116-1575043694:51758..53124TCONS_00046692-exon-scaffold_116-1575043694:51758..53124Clytia hemisphaericaexon
TCONS_00046692-exon-scaffold_116-1510915933:65169..65258TCONS_00046692-exon-scaffold_116-1510915933:65169..65258Clytia hemisphaericaexon
TCONS_00046692-exon-scaffold_116-1510915933:57755..57856TCONS_00046692-exon-scaffold_116-1510915933:57755..57856Clytia hemisphaericaexon
TCONS_00046692-exon-scaffold_116-1510915933:57422..57521TCONS_00046692-exon-scaffold_116-1510915933:57422..57521Clytia hemisphaericaexon
TCONS_00046692-exon-scaffold_116-1510915933:56983..57173TCONS_00046692-exon-scaffold_116-1510915933:56983..57173Clytia hemisphaericaexon
TCONS_00046692-exon-scaffold_116-1510915933:56676..56798TCONS_00046692-exon-scaffold_116-1510915933:56676..56798Clytia hemisphaericaexon
TCONS_00046692-exon-scaffold_116-1510915933:56022..56043TCONS_00046692-exon-scaffold_116-1510915933:56022..56043Clytia hemisphaericaexon
TCONS_00046692-exon-scaffold_116-1510915933:55081..55865TCONS_00046692-exon-scaffold_116-1510915933:55081..55865Clytia hemisphaericaexon
TCONS_00046692-exon-scaffold_116-1510915933:54578..54676TCONS_00046692-exon-scaffold_116-1510915933:54578..54676Clytia hemisphaericaexon
TCONS_00046692-exon-scaffold_116-1510915933:51758..53124TCONS_00046692-exon-scaffold_116-1510915933:51758..53124Clytia hemisphaericaexon
TCONS_00046692-exon-scaffold_116-1491911889:65169..65258TCONS_00046692-exon-scaffold_116-1491911889:65169..65258Clytia hemisphaericaexon
TCONS_00046692-exon-scaffold_116-1491911889:57755..57856TCONS_00046692-exon-scaffold_116-1491911889:57755..57856Clytia hemisphaericaexon
TCONS_00046692-exon-scaffold_116-1491911889:57422..57521TCONS_00046692-exon-scaffold_116-1491911889:57422..57521Clytia hemisphaericaexon
TCONS_00046692-exon-scaffold_116-1491911889:56983..57173TCONS_00046692-exon-scaffold_116-1491911889:56983..57173Clytia hemisphaericaexon
TCONS_00046692-exon-scaffold_116-1491911889:56676..56798TCONS_00046692-exon-scaffold_116-1491911889:56676..56798Clytia hemisphaericaexon
TCONS_00046692-exon-scaffold_116-1491911889:56022..56043TCONS_00046692-exon-scaffold_116-1491911889:56022..56043Clytia hemisphaericaexon
TCONS_00046692-exon-scaffold_116-1491911889:55081..55865TCONS_00046692-exon-scaffold_116-1491911889:55081..55865Clytia hemisphaericaexon
TCONS_00046692-exon-scaffold_116-1491911889:54578..54676TCONS_00046692-exon-scaffold_116-1491911889:54578..54676Clytia hemisphaericaexon
TCONS_00046692-exon-scaffold_116-1491911889:51758..53124TCONS_00046692-exon-scaffold_116-1491911889:51758..53124Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_116supercontigscaffold_116:51758..65258 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.164475	0.137469	0	0.6964	1.19461	0.76981	1.67456	1.38028	0.471208	0.691793	0.415092	0.421753	0.430716	0.434474	0.217681	1.40953	0.61698	0.475001	0	0.542792	0.305468	0.722929	0.366299	0	0	0.881928	0.636326	0.49177	0.67673	0.342285
Blast
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BLAST of TCONS_00046692 vs. Swiss-Prot (Human)
Match: TF2AA (Transcription initiation factor IIA subunit 1 OS=Homo sapiens GN=GTF2A1 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 5.764e-22
Identity = 41/56 (73.21%), Postives = 49/56 (87.50%), Query Frame = 1 
Query: 1450 DDEEQADLFDTDNVVVCQYDKIARTRNRWKFHLKDGIMNLNSKDFVFHKANGDAEW 1617
             DEE  +LFDT+NVVVCQYDKI R++N+WKFHLKDGIMNLN +D++F KA GDAEW
Sbjct:  321 SDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSKAIGDAEW 376
The following BLAST results are available for this feature:
BLAST of TCONS_00046692 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TF2AA5.764e-2273.21Transcription initiation factor IIA subunit 1 OS=H... [more]
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