TCONS_00046693 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046693
Unique NameTCONS_00046693
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2743

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046693 ID=TCONS_00046693|Name=TCONS_00046693|organism=Clytia hemisphaerica|type=transcript|length=2743bp
cgtgGTCATGTTTTGATCTCAATAGTCAGTTATCGAAACTACTGGTAAGT
GTGAAAACGGATCGTTACCATATTTGGATTTTTCTCTGCGGGGGACAAAA
TTTGTGATGATATTCCCGTGCACAAGCCCATCGGTATAAAAGACGTTTCA
TTCGATTTTGAAGATTGCACAGGACAGATCAACTGACAAGAATGGCAGCA
AATAATCCTGTGcCAAAGATCTATCGTGCTGTCATTGAAGATGTCATCAA
AAATGTTCGGGAATCATTTCTCAATGAGGGGGTGGATGAGGCTATTCTCA
ACGAGCTCAAGCAGcTCTGGGAAAACAAGTTACAACAATCAAGAGCCATA
GATGTTATTCCTTCTGATGTGAATGTACGAGTCAGTCTAACGTATCCACA
TAGCTCACAAACAGCTGCAAGCTCTACACAATCCTCACTACCTACCACTG
TGCAGCCAGCTCCAAAACCTGCTGCCCGTCCGCAAGCAACGGCTGTGGCA
CCTACAACAACCCCAACACAAACTGTTTTTAGAAATGCAGCTGGCCAGCA
GCAACAAGTTGTTTATGTTAGCAATCATCCAACTCTTGGTCATGTTGGGC
CCATGACTGGAGCTGCAGTTCAAGCAACAATGGCTTTGCAAAATGCTGCA
GCTGCTGCGGGCAGGGGACAACCCCAGGCAATCATTCGACAACCTATCAT
GGGCATGCCCGGTCAGGTTATAGTCCAGGCCCAGCCTGGAGCACCTAACA
ttTATCAACACTTTCAAGGACATGTTGCAGCAGTCGGTCAGCGAGTGATA
TACGCTCCAGCGACTGCTACTCCTGCTACAGTTGCTGCTGCAGCTGCCCA
ACCTGCACAAATTCAAGCTGCACAACAACAGCAAGCTGCAGCTGTTGCTG
CTGCACAACGAACTCAACAGGTAGCAGCAGCACAAAGAACTCAACAGATA
GCAGCAGCACAAAGAGCTCAGCAAGCAGCTGCAGCGGCAGCAGCAGCTGG
ACAAAAGCCACCTAATCGTAACATAGTCCAAGTAGATGGAGCAAATGATG
AACAAGAAACGTGCTGCTCCCCAACGACCtcgacctctacaaaaccaagG
CAACAACCTAGATGTCGAAAACCATCCAAAGAAATTATACTACAGTTTGA
CGGACCAAATGATTCAGATTCTGAGGATGAAGAAGAGGAAGAGGAAGAAG
ATTTTGACAATGTGGACATCCCGGTGGCTGCCGGTGGTATTAGCGGTGGG
GGTGTTGATATAGATGAACCTGGGGAGGAAGAGGAACCGTTAAATTCTGA
AGATGACGTCACTGATGATGAAGAACAAGCTGATTTGTTTGACACGGATA
ATGTTGTTGTTTGTCAATATGATAAGATTGCAAGAACTCGGAATCGTTGg
aaatttcatttgaaagacGGTATAATGAATTTGAACTCTAAAGACTTTGT
TTTTCATAAGGCCAATGGCGATGCCGAATGgtgatttgttttcatttgat
gAAAATTGGTTTTGTTGCTCCCAATGTGTAGAATACTATTTTCACGATGG
GGGCCGGTCGCTGAAAATTACTTGGTCACATTGATTATTATGTCATTGTA
GTAGACGCAAACAATCACAAAGAACTATCACAAACACGTTGTCTTATAAT
GATCGTCTTTGAATTGGCTCCGAGAGggaaaatttgttaaaaacaaCTGA
AACTTGGGatatatatttctatgtttAAGAAAATCTATAAGAACTGATTA
ACCTCGACTAATTAGACTAACAAGCAAGTGTTTCTTTTCGAAAACACTCA
ATTTTGAAAGAATGGATTACCAGCACAAGTTTTGAGTTTTATGGGCTGTT
ttacttttgtgtttttttttcagattttgttttTAGGGTAGATAACTTTA
TTTCCTTTCATGAAATTTTAATAGAGTGTAAAAAATGTTGTAGTCTCGTT
GTAGATTTGTCATACTTTATTGAATACTATATACTGtagggctcttccag
aaaaaaatttgaatatggctggtggaggatataatacttttttgaaaact
tgccCCAGCGCCCgaacattgtgacttttgacccacCGGACAGCATGCCT
AACCCCCAAACAAGCACTAGTTGACCCCCGGACATGCNACTTTTGACCCA
CCGGACAGCATGCCTAACCCCCAaacaagcattagttgacccccggacat
gcaaaattaccctcaaacagagcaaataTACTCCCACtcccatgtacgaa
cattttctggaagggCCCATAGGTCCATAGAATGATATAGTATCATACAT
GAGTAAAAAGGAAATAATGTTCTTTAAAGTGCCAGCCAATTCAACCAACG
CTTTATATACGGAAAACTTAATTGACACTGAGTGGTTGCAACTAGCTTTT
CggctttgaaaatttggaatttttaaaCTTGAGTGctaaatgttattttt
tttttttttaacttttgtgtTAGCATCCCTGTTGTTTTATTTTGGTTGAC
CTTTTTCGGACATGAATTATTATAAAATACATAAATGAATATTTAGCTTC
AATCAATTTgcgttttgtaattttttatagaaaattttaatttctaaaca
ttttattttttctttggttAATAATGAATATAATAAAGTATTTAAataga
taaaataaatttaGCCAAAAAAACATTGCATTTTTTGTCCATGTTCTCAA
ATTTCCGTTAAAAATGGTTAGATTTAACTATTTAACGTAGGTG
Run BLAST on NCBI

transcript from alignment at scaffold_116:51758..65380-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046693 ID=TCONS_00046693|Name=TCONS_00046693|organism=Clytia hemisphaerica|type=transcript|length=13623bp|location=Sequence derived from alignment at scaffold_116:51758..65380- (Clytia hemisphaerica)
CGTGGTCATGTTTTGATCTCAATAGTCAGTTATCGAAACTACTGGTAAGT
GTGAAAACGGATCGTTACCATATTTGGATTTTTCTCTGCGGGGGACAAAA
TTTGTGATGATATTCCCGTGCACAAGCCCATCGGTATAAAAGACGTTTCA
TTCGATTTTGAAGATTGCACAGGACAGATCAACTGACAAGAATGGCAGCA
AATAATCCTGTGGTAAATGCTTAGTCTTTCTGTCCGAAGAGTATTCTATT
TGCTACCTCTTTTGTTTCAGTTTTTCGTGGAGAAAGGTGTGTAAAAACTT
TCTCCTTTGATATGTCTTCCTGCTGTTTAATGAATTAAAAAAAAATCACT
TCTTTATCTTTACCTGATCTGATGATATATAGACATTACAAAATGCAGTT
TTTATTTATCCAATTCGTGCCACACAAATTTTGGTTGAATACCATTCAAG
AATTTAAGTCATTGTTTTTATATCTAATAGTAAAAATTGTTGGAAACCTG
GAAAACCTCAATTTTTCTTCAAAAACACACTTGGGGGTCTTCGACAAAAA
ACTTTCGAAATTTTTATCGGCATTGGGCCGATAAGCTTCAGACCCCCTCC
CCCCCTTGCTCTTATCGGCCAAAATTTTTCAAATCCAACTTTTACATCTT
CGAAAACACAATTTCCTCCAATCTTGTCCGCCATCGCCTTCCCCCCCGTC
ATCGTTGAATTTTTGTCTATTTGTGCACCAACATTGAGTTTGTTCATACC
CGCATTGATATTGTTAATCAAAACGAAAGATAAAATGACTGGATGAAGTC
GCAACATTTCGAAGGAAAAGGCAGCGCGCTGGCCGATGAAAAAGAGTTTT
TTATCAAAGCTATTTCAAAACTGTACTTTTAAAGTTGCGAATTTGCACGC
AAAAGTGAAAGCACCAAGTGAAATCATATGCTTTCAGTGGAGTTAGTGGA
CGAAATCAGAAAGAAATTGGCTGAAAGGATTTTCGTCTCAATACTTGTTT
TTTTATCGGTATGTAGTTGGACCCCCCCACCCCCTTATCGGCCCAATGCC
GATAAAAAATTCGAAAGTTTTTTGTCAAAGATCCCTTGACTGCTTGATAA
CTCTTGCAAAAACTGTGAGATTTGACTTGTGACATAAATTTACAGAAAGC
CCATGTTAAATAATTTGTAAGGGTGCCTACTTTTGGAAAATTTGGGGAAA
AAGTAGAAAATTTGAGAACATTTTGGAATGTTAGTCCAATTCAGGGTCAC
TTTTTTCGCAAATTTCGAGTCCCACGTACGGTCCATTTTTCGAAGCTCAG
CGGAGCACCCCCGTCGGTCGACAAGGGTAGTACCCCCGCCCCCTTGGGTG
TTAACCTCCACTGGTGCAAGTTACCCACTCTCACGGTAAGTATTATATTC
CAACGCCAGGACAGCAATTATTAGATAACTACCAAAAAACCAGGCGTACC
CAATCGATGAAATCGATACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGA
GGGATAAGGCTGGGACAATCTATTTAAAAGATATGGACAAAAAAAGGCAC
TTTTTTGGGTGATAATTAAGATTTTACTTAGAAACTTTAATTCTCTTAGC
TTACCCCCATCTCGNATCGATACGGGAAATCAATCGATATTAATCAATTT
TAATCGATAATAATCGATAGTGATCGATAACTAATCGATAAACAATCGAT
AGCCAATTGATACTAAGACTTTACGTTCTTATCGATTGGATTCGATTGTT
ATCGATTACTATCGATTAATCGCNCCTGATATGAGCAAGGGAACCATGTT
GGCCACCCCTACTGAAAATTTCAGATCAAAACAAACAAGGAATTAATTCC
TGTAACTCAAAGAAAATTGGAAAAAGCTGTTTTTTGACTGTTTTCGATCC
TTTTTTGGTAAAAGCTATGCAATTTATGTTTGTATTTCTAGAAATCTTAC
CCATTCATTGTCAATACATTTTTTATTTGAAAGTAATCTCTTCATGGAAT
AAAAAGATACTAGCCGGTACCCGGCGTCGCACGCCCGTTTAGGTGTTTGC
TGAACGCATTTAAAGTCATTTGGATGTTGGGAAGGTGGCTTAACTGGGCT
TAAACACGATGAAATCAAAATTAAAGGGAAANACAATTAATTACGATATT
CAAGTGTTTTAAGTACGCGTTAAAGGCTTGTGTAATATATATTACATATA
GATCGTATAATGTATTAACAAGCACTAGCCGGTACCCGGCGTCGCACGCC
CCTTTAGCTGTTTGCTGAACGCATTTAAAGTCATTTGGATGTTGGGAAGG
TGGCTTAAACACGATGAAATCAAAATTAAAGGGAAGAATTCTCTTCAAAG
TTTGACTCTATCCCTCCCATATTTTGAAAAAGATTTTTGTGGCAAAAATG
ATCAGTAAGCAGGAAGGGCGTCATTCCCAAATTACACCATACCGGCGACC
AGCAATGTTCGAGACGGCTCTGCAATAAGATTTTTTTCTCGCTTCGTTCG
CGTTACATTTGCTGTAGTTCTTGATGTTTAGGAAAACTTTGATGTCAAGA
TAAGCGGAGTGAAATAATAGACATGACACGAGTCGAAAAAAGGCAGCCCG
GGGCAAGAGAAGGGTATGGGTATGTGTCGGCCTTAAGGGTGCCTTTTTTG
AAACATGGCAGTTTGAAAAATCGGAAAATCAAACTTCAGTCCCACTAACA
ATCGGAAAAATAGGAAAATTTCAACTTTTTGTCACCAGAAAGATAGAAAT
TTGGTCAAATTAGTACCAAAAAGTGAATTAAAATTCACACAATTTCCCTT
GTTTCTTCTCATCTTTATTCTGCTAAGGGTCTGAGGGACAGGGCCGAAAG
TCAGCTCGCAACCATAGTCCCCCCGGAAGGCAGCTAGGACACGCAGACAA
AAAAGCGTGATAGCGCAATTTTATGTTGCTTTTTANNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATAACTTTTCAAAT
TCAACAATGACTTAGATTTACAGCAAAATAATTATCGACATAGATGTTTA
AAGGTCCCTTTTTACGAAGAAAGAACTCTAGTTTTTACCGCCGTTTGAAT
TTATTTTTAATGTTGCTGTTGTTCTAACAAACTTGTCTTGTGATTCTTAT
GTCTTGTTTTATATTTGTTCTTTTCTTTAACAGATTCTGTTTAAAAGATT
TTCTTTTGTTTTGAAAAGAATTCGAATGTCTCAAATCAAATAAGGTCGTT
AATTACATTCGAAAACATAAAACAAAAAAAAAGAAAGAAAAAAAAAGNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNAAGTCTAATCTATCAATCAAAACAAAGTCTTTATAAA
ACGGCGCGAATCTGATTCAACACATTTGTGGAGCAAGAAGCAAAAGTCAT
CTTTTAAAAGAACAAAACATTGCTTGCGAAAACGAAAGTGACACACAAAA
AACAAACAAACATACATACAGACTACGGCTATTAATATATAGNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTTTTCTTGTCCAAGGCTTGATCACGCGTAA
TAATTAGAGTGAAATTAATTATGCAGAATTTTGGCTACGCGTTAATAATT
AGAGTAAGATTAATTACAATTTTTTGCAAAAAACAGGGTACGCGTTAAAT
TAGACTACGCGTTAAATTAGAAAAACCACGGTACATGGTATTTGGCCATT
CCTATTCCCCTGTGCATTAATCCGATTAATACAGTGATTTGTTTGTGTGA
TTCTACCCAAGCCCTGGTCGCCAAGAGGGTTAGAATTGCGGGAAATTCGG
CCATCGAGATAGTTATTCGGTCGGTGGATAGTCGTCCACCGACCGGTGGA
AAATTGGTCGTCAGAATAGTCATCCGGTCGTCGAAATACTTTATTGCATG
AAAATTTCGCGGTTTAGCGGTCGAGTTCAGAAAGCCGCGAAATTAAAATG
CCGCGAAAAACAATTTTGGAGCTCAACCGTGAAATTAAAATGCCGGGAAA
TGTGATTTTTTGGGTCAACTGAAAAAAAACCCTAAAAGTAGAGTCTTTTT
TGCAAAAAAATGCAATAATCAAGACAAAATTCTCTTGGACCGCGAAATTA
AAATGCCGCGAAATGTGATTTTTTGGGTCAACTGAAAAAAAACCCTAAAA
GTAGAGTCTTTTTTGCAAAAAAATGCAATAATCAAGACAAAATTCTCTTG
GACCGCGAAATTAAAATGCCGCGAATTGCAATTTTGGGCAAAAAAAACGC
GAAATTAAAATGATCGCAAAATTTTCATGCCGCGAAATTTTCATGCAATA
AAGTATATAGTTACCCGGTCGGCGAAATGGCCGTCCGGATGGCGGAAATC
TTATATCCGGCCGGCAGAAAATATACTGTCAGAATAGTCACCGGCCGTTG
GAATAGTCATCCGGCCAACGGAAAATTGGCCGTCGGAAAAGTTATACGGT
CAGCGGAAATAGAGGCCGAGCTAGTTTTTTTCGAGCTAGTTTTATTTCGG
CGGTCGGACAACTATTATTATTATTAAATTCCCGTGAAACTTCAGAATTT
TGAGCTCTGAACCGCGAAATTAAATTCCGCGAAAATTTCTTCCCGCGGAA
ATTTCTTCCCTTAAAGTACGCTACGATATTATCGTGAGATACACTCTGGT
ACACAGACTAGCGATCATACATACAGAAAATTAGCACAATCGATCGCAAT
CGATCTTAATCGATAACAATCGCATTCAATCGATGGCTAATCGATAATAA
TCGAATTTAATCGGTGAAAATCGACACCAATCGATAATAAAATTTTACGT
TCCTATCGATTGGCCATCGATTAGTAATCGATCGATCATCGATTAGTAAT
CGATCGATCATCGATTACGAACGACTTTTATCGATTGACATCGATTAAAT
CAACAATCGATGTTATCGATTGGGTACGCCTGGAAAAAAGAAGTTAAGAT
ACTAATTTTAAACCAGACCCAATCAATCAGTTACATCAATATGCCAAAAA
CATTTTGTTCAACCACCTTCACTTCAAGATAGGCCACCATAGAATGAACT
TCCTTTTATAGGATGAACCATANNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNTTGCACTCCATCACAGAGCCTATTTGAGATATTTT
ACTAACTAGCCCAGAGAAAAATTTTAAACCTTTATTATTTGAATGCATGC
CTTTTTGATACTCAAATATAAAAAAATTAAAAAATTTAAACTCTGCGATG
GAGTGCAAGGCTGAAAGCCACATGAATATGGTTCATACTATAAAAGGAAC
TTCATTCTATGGTGCCCTATCTTGAAGTGAAGGTGGTTGAACAAAATGTT
TTTGGCATTGATGGAACTGTCAATCGGACTTGTCGAACCAATCAAACAAT
CGAACTCCATCGAACAATAATTAAAGTTCGAACTTGGTAAAATTAATCAA
ACCTAATCAAACACTCACAATTTTTGAAGAACTTGTCGAACAAAATTGGA
TTTATATCGAACTGATCGAAACGCAACCCATTGATCGAACTTAACCGAAC
ACTCACAATTTTGTTAAAAAGCTTAGAGTTCGATTAATTTTGGGCTTTCA
AGCAGACTTGCCAACATGAAATATTACCGTCAACTGCTCTAACTTGGGAC
GATTGGTCGAAACATGGGACTGTTAGGGGAGCGCCGTCCATATTCATTTG
ACAACGCAAAACGTCAAATTGACGTTGTGAAGGGATGGGGGGGGGTTTCA
AAAGTTAGGTTTGATGTTATAAGAAATCAAAGGTATACCTTTTTGTGAAA
ATCGCGAATATTTGTAACCACCAACCACACTATACTTTATAAGCTTTCGA
AAATATATTCGAGTATGAATTACATGAAAATTTGTTGCTCGCATAATCCC
ATTGGTTCGCGCTATGATATCATTACATCATATTTTTATTTTTTGAGAGG
ATAACGTCAATTTGACGTTATGCGTCGTCAAATGAATATGGACGGGTCCC
CTTACCGTGAAGTCGGGTAACTAGCATCAGTGGAGGCAAACATGCATAGC
CATCAAATGACTGACCAATCAAAGCAGCAAAATTTCAAAACAAATGAACT
ACGCAGCTCCGCTCGCTACTCTACTCTACCATTTTTTTTTTGATTTAATT
TTAATGACCAGGCAGGTCATTCATTTTAGGGCTATGCATGTTTGCCTCCA
CTGATGCAAGTTACCCGACTTCACGTTAATATCCTGGCCTGTATTTTCAC
TTACTGTTAAATCTCTTTGACAACAAATTTGTTTTGATAACTCCACCAAG
TTTATCAATCATACTTTCTGTCATAACATGTCACGATAACTTTTACTGAT
AGCGCACCCTTTTTAACTTTACCTATCGTAAGTTGGTCTAATTCCGACAC
CATTTTTTAGAGACAGAAATAATATGAAAGCTTGAATCACTGATTGAAAA
AGAATAATTCTCTCTGGCCATTAAGCAAAGAAAAACAGTTTCAACCTTTC
TATCTATTTCAGCTGATAATTGTGGGGGGAAATTTGTTCGTTTTTTTGAG
GTCGCTCAATTTTTTTAGTCAAAGCACTTGTTATACATTTTTGGAAAGCT
AAGGGGTAGTGGAATCAAAATAACTTGGGTATACCTGTTGTATATTTTTG
GAAAGCTCTCAAAAAATTTAAATTAGAGATATATTGCAAATATAGGCGAT
TTCTGTACCTAACTTGAGATATTAACCCTTAAAAACAGTGTTTTTCAGCC
AGAAACAGCTGTTTTGTTCAGTTTTTGCGCTTCTGGAAGCTCGATATCTC
GAGTTAGGTACTGAAATCACCTATACTCACCTTATAATTGATAAATTATG
AAAATATAGCCTACTGTAAGGTATTTTCCTTCACATCCGCAACCCCAAAA
AAACAATCCCAAAAGCTTTAATTCAAGTTTTGAAATTTAGAGGGACCCAT
GGGTGAGGAGGAGCTGCTTATTAAAAAATGTGTAGTAAAGAATTTTGATT
ATTGATTTTCAGTTTTGAACTATTTATAACTTTTTAATAGTCATTCTTTG
ATTATCTTTTTTTCTTGATTTTAGCCAAAGATCTATCGTGCTGTCATTGA
AGATGTCATCAAAAATGTTCGGGAATCATTTCTCAATGAGGGGGTGGATG
AGGCTATTCTCAACGAGCTCAAGCAGGTAATTGCATGCAAATGTCTAACT
TCACCAAGATTCACCAAGTTTGTTGCAATACTTTTTTAATTACCAGATAA
GTTTGATATAATAAATCATTTTTTTGAATAGTTTTTAATTGAATAGAATT
GAAGGAACTCAGAAAATGAGTGATCTTATTATGATGTTCTTTGAAGGAAC
TTAATCCGGCACATTTTATTAAAATCTATAGGATATCTGAAATTATATTT
TCTTTTCAGCTCTGGGAAAACAAGTTACAACAATCAAGAGCCATAGATGT
TATTCCTTCTGATGTGAATGTACGAGTCAGTCTAACGTATCCACATAGCT
CACAAACAGGTAAAAATTACCACAGGGAAATCACAGGGAAAGACAGGGAT
TGCCTAAGGGTATTACAATTTACATCTGTACGATAACTAAATTTCAGATT
TCTAAAGCTTAAAAATTAGTCGAGTCAGAAAGAGTGATACATTTTCTATC
TAATCCTTATTTCAATGTATGTACTTGTTTTATAATTTAAAAATCTTGTC
TCATCAATATTAAACTTAATAAACAAATTTATACAACATTCTATCAATTT
ACTCCAGCTGCAAGCTCTACACAATCCTCACTACCTACCACTGTGCAGCC
AGCTCCAAAACCTGCTGCCCGTCCGCAAGCAACGGCTGTGGCACCTACAA
CAACCCCAACACAAACTGTTTTTAGAAATGCAGCTGGCCAGCAGCAACAA
GTTGTTTATGTTAGCAATCATCCAACTCTTGGTCATGTTGGGCCCATGGT
ATGTTCTAGTTCATGTAGGGAAGAACCAGTGGGGTCCACGATTTATGAGC
TATAAAATTTAATCAGTGAGTTATAAGATATGTGAGATATATCCTTGCAG
ATCCTTGTGTTATGCATTATGATTTCATTCTGAGAAGTCTTTTGGTTTAA
TTTCTCAATGGTCCCACTTATTTTTACCACAGACTGGAGCTGCAGTTCAA
GCAACAATGGCTTTGCAAAATGCTGCAGCTGCTGCGGGCAGGGGACAACC
CCAGGCAATCATTCGACAACCTATCATGGGCATGCCCGGTCAGGTTATAG
TCCAGGTGAGTAAAGTCCTTCATTAGTTTTTGTTTCAAGGATGGCCTTTA
AAATTTCAAACCCTAGGTTTTTGAAGCTAGATCGGTCAGTAAATGAATTT
TATTGATAGATTTATCATTCTTACAAGGCAACAGTTAATTAAACCTTACT
GTTGAATTATTTCTTTTCAAAACAAAGATGGCCACTCAAAACTTTCCCTG
AATTGTTTCCCATTGTTGTGCTCTTATATGGTTAAGATAGTTTAAAGTGA
TTTAGAACACACACTTTCTTTATAAGAATATGCTAAGAATATCACCATCA
TGGGAAATATGCAACAGAACCTAAGAATGCCATTTTAGAACATTTTAAAT
GTCTGTCCCTCCTCAAAACATTAACAAAAATGTAATTTTATGCTTCAGGT
ATTACCAGGTATTAATTGTTGGATTTAGGTCCTAACCTAAGAATACCATA
TTGAATATTTTTAAGATGATTCTCCTCGAAAAGTTGAGAATATCCATGAT
GACTATATGACTAAAAAAGTGTGAGTGGATAAAATGAAAAAAAAAAATTT
TGGGGGGGGGGTAAAAATCCACTCACCATGATGATATTTTATTAACTTAG
CAAAGTAATTTACTTTTTGTACATTTTTATTTTACAGGCCCAGCCTGGAG
CACCTAACAGTAAGTATTGTTTTAAGATTATAAGTCTATAGTATATTTGA
TATTTTTAAGTCCTGTTAAATGTTTTAGCTCTTTCACAGACACTTTTGTG
TATTTAAACTTTGAAACTGAGACATTTGGTAAATTATATATGTTTACCTC
TTCTTCTTTTTTTAGTTTATCAACACTTTCAAGGACATGTTGCAGCAGTC
GGTCAGCGAGTGATATACGCTCCAGCGACTGCTACTCCTGCTACAGTTGC
TGCTGCAGCTGCCCAACCTGCACAAATTCAAGCTGCACAACAACAGCAAG
CTGCAGCTGTTGCTGCTGCACAACGAACTCAACAGGTAGCAGCAGCACAA
AGAACTCAACAGATAGCAGCAGCACAAAGAGCTCAGCAAGCAGCTGCAGC
GGCAGCAGCAGCTGGACAAAAGGTGAATTTTCATTTCAGTCATCTTCAGT
TATTGATAAAAGAACATAACTTGCCTAGCCTTATTACTTCAAAAAGTGCA
AGTTTGACGAGGATACATCATCCATAATTTTTTTCTGGTGAAAAGAACTC
TTGTAATATCTAACAAACTGATCAGGTCTATGCAACTTCAGGCATTCTTT
CATTCCAGCTCAACTGAAGTTGAGAATAGGGCAGTTGTAGTATAGGTAAA
TCTTTTTTTAATTATCTCTTTATTTTCCAGCCACCTAATCGTAACATAGT
CCAAGTAGATGGAGCAAATGATGAACAAGAAACGTGCTGCTCCCCAACGA
CCTCGACCTCTACAAAACCAAGGCAACAACCTAGATGTCGAAAACCATCC
AAAGAAATTATACTACAGTTTGACGGACCAAATGATTCAGATTCTGAGGA
TGAAGAAGAGGAAGAGGAAGAAGATTTTGACAATGTGGACATCCCGGTGG
CTGCCGGTGGTATTAGCGGTGGGGGTGTTGATATAGATGAACCTGGGGAG
GTGAGTGAATGAATCAATTTGATCTGCCTTGATTGGGGTTTTTTAAATTT
CTTTCTAACAGTCATATTTTAATGATCTTGGTTTAGCCCAAAATTTCATT
GGTCTTTTACTGCACTATGTAAAACGGGAAGCAGCAGGAAGTGGTAATTT
ATAATTACTATCAATTCCTCAAACTCCAAAGTTCCGCTGTGCTGCAATAT
CCTGCAACATTCCACAGGCATAATAAAAGGTGGAAGGTCTTGTTAGGTGC
TTAAAACAGACATAATATCAAGAAGGGGCACCAGTAGGTTGTAAGTTGGA
CTTTTGTATAGAGTTCTGAAGAGACGCTCAATAAAAAACCAAGCAATTCA
ACATCCTGCAATTCAAAATTTCCACACATGTGTTTTGTTTACTATCATGT
TAAGGAAGAGGAACCGTTAAATTCTGAAGATGACGTCACTGATGATGAAG
AACAAGCTGATTTGTTTGACACGGATAATGTTGTTGTTTGTCAATATGAT
AAGGTATTTCTTAATTAGTGAAATCTTATTTGAAGTACTTTATTCTTGCA
AGGAAAGTTGTTCCCTTAAAGTATCAGAGGCTTTTGTGATTTTCAGGACT
GCAGAAAGTATACATGGGTCACAACTCAAAAATTAGATTACCCCCTTTGG
ACTTTTTTAACCTACCTCCGGGTACCCCGGTGGAGGTCCTATAAATTAAC
CGTTGTCCCGTTCGTTCGTTCGTCCGTTCGTCTTTTACCAGCTTTTCTCT
AGTCTAGCAAGCTAGACGACTAATTTATACATAGTAGAAATAAAGCAAAA
AATAATGAATGGAACAATTTTAGTCGTCTAGAAACCTTTGTGCACTAACT
CCAAACAAAAGAAAAGTGTCAATATTGCAATTATAATCTTTTCCTGCTCA
AAATAATTCTTGAGAAAAAAAATATGTTTGGATTTGTGTATTGAAAGTTT
TTCATTTGAGTTTATTTCGTTTCGAGAGTTTGTTGTTGCTTGATAAATTG
TTTTCTCGCTACGCAAGTTTCTGCGTAGCTAGCCGGGGTATCTATAAGGC
TGGAACACCGGATTCTTCCAGTCGTTTATACAAACTAAATCCCGTATTAT
TATTATTATTAGTATTGGTATTATTAGTATTACACACATTATAAACGACT
CCAGTCTAGCTTTTCTCGAGATTTGCTCATTAGTTTTTTCTGATTTTTGG
CACAAAGATGCAAAATGGCAATGGCCAAAATGTGACGGAGCCTGATTTTC
GAAAAAAAAGATTTTGCCGGAAAAACTTGTTTTTTTGGCATTTTCTCGAG
ATTTTATCATTATTTTTTCTGATTTTTTGCTCAAAGAAGCGTATTAACAA
TGCCCAAAACATGGCCGAGTCCGATTTTTGAGAATTGTTTTTTTTTCTGG
GTTTTCATTGGACTTTTTCCTTATAATTGGCTGATTTTTCATTCAAAAAC
ATTATTAATAGCAATGCCCACCATCAAGCATGTTTCAATTTTCAATAAAA
CTGATTTTTGAGACCAGAACTTTCTATTTATTTTTTCCCCTACAACCCTT
CCCTCTCCCCCCATCAACAATCAATGATGAATTTATTGCGTTATGTATTT
TCACTAAACTCTATGTTTTCTGACCGATTTTTTCATTTTTGGACCTACCC
CGGTCCTATAAATTAACCTACTCAATTTTTTAATGAGATAGATGTTTTTT
TTTTGCTCACGAAGTCTTGAATATGAAAGATTATNCGCTATATTTTCTGA
CTGATTTTTTTCATTTTTGTCCTCACATTGCTATCTAACTTTCATCATCA
GGTAGGTCCATTCAGCATCTAGCTTGTTTCGTTTATTGTGTCATTTATTC
CAATTAAATTAGGTTGTATGGATTCTTCACAGTTTTATTTACTTTGCGAG
TGGTGTAACATTATTTTGATTTCTAAATTTTTCTTTACAATTTTTCTGCT
TTCTAGATTGCAAGAACTCGGAATCGTTGGAAATTTCATTTGAAAGACGG
TATAATGAATTTGAACTCTAAAGACTTTGTTTTTCATAAGGCCAATGGCG
ATGCCGAATGGTGATTTGTTTTCATTTGATGAAAATTGGTTTTGTTGCTC
CCAATGTGTAGAATACTATTTTCACGATGGGGGCCGGTCGCTGAAAATTA
CTTGGTCACATTGATTATTATGTCATTGTAGTAGACGCAAACAATCACAA
AGAACTATCACAAACACGTTGTCTTATAATGATCGTCTTTGAATTGGCTC
CGAGAGGGAAAATTTGTTAAAAACAACTGAAACTTGGGATATATATTTCT
ATGTTTAAGAAAATCTATAAGAACTGATTAACCTCGACTAATTAGACTAA
CAAGCAAGTGTTTCTTTTCGAAAACACTCAATTTTGAAAGAATGGATTAC
CAGCACAAGTTTTGAGTTTTATGGGCTGTTTTACTTTTGTGTTTTTTTTT
CAGATTTTGTTTTTAGGGTAGATAACTTTATTTCCTTTCATGAAATTTTA
ATAGAGTGTAAAAAATGTTGTAGTCTCGTTGTAGATTTGTCATACTTTAT
TGAATACTATATACTGTAGGGCTCTTCCAGAAAAAAATTTGAATATGGCT
GGTGGAGGATATAATACTTTTTTGAAAACTTGCCCCAGCGCCCGAACATT
GTGACTTTTGACCCACCGGACAGCATGCCTAACCCCCAAACAAGCACTAG
TTGACCCCCGGACATGCNACTTTTGACCCACCGGACAGCATGCCTAACCC
CCAAACAAGCATTAGTTGACCCCCGGACATGCAAAATTACCCTCAAACAG
AGCAAATATACTCCCACTCCCATGTACGAACATTTTCTGGAAGGGCCCAT
AGGTCCATAGAATGATATAGTATCATACATGAGTAAAAAGGAAATAATGT
TCTTTAAAGTGCCAGCCAATTCAACCAACGCTTTATATACGGAAAACTTA
ATTGACACTGAGTGGTTGCAACTAGCTTTTCGGCTTTGAAAATTTGGAAT
TTTTAAACTTGAGTGCTAAATGTTATTTTTTTTTTTTTTAACTTTTGTGT
TAGCATCCCTGTTGTTTTATTTTGGTTGACCTTTTTCGGACATGAATTAT
TATAAAATACATAAATGAATATTTAGCTTCAATCAATTTGCGTTTTGTAA
TTTTTTATAGAAAATTTTAATTTCTAAACATTTTATTTTTTCTTTGGTTA
ATAATGAATATAATAAAGTATTTAAATAGATAAAATAAATTTAGCCAAAA
AAACATTGCATTTTTTGTCCATGTTCTCAAATTTCCGTTAAAAATGGTTA
GATTTAACTATTTAACGTAGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029793XLOC_029793Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046693-exon-scaffold_116-1575043694:65169..65380TCONS_00046693-exon-scaffold_116-1575043694:65169..65380Clytia hemisphaericaexon
TCONS_00046693-exon-scaffold_116-1575043694:57755..57856TCONS_00046693-exon-scaffold_116-1575043694:57755..57856Clytia hemisphaericaexon
TCONS_00046693-exon-scaffold_116-1575043694:57422..57521TCONS_00046693-exon-scaffold_116-1575043694:57422..57521Clytia hemisphaericaexon
TCONS_00046693-exon-scaffold_116-1575043694:56983..57173TCONS_00046693-exon-scaffold_116-1575043694:56983..57173Clytia hemisphaericaexon
TCONS_00046693-exon-scaffold_116-1575043694:56676..56798TCONS_00046693-exon-scaffold_116-1575043694:56676..56798Clytia hemisphaericaexon
TCONS_00046693-exon-scaffold_116-1575043694:56022..56043TCONS_00046693-exon-scaffold_116-1575043694:56022..56043Clytia hemisphaericaexon
TCONS_00046693-exon-scaffold_116-1575043694:55609..55865TCONS_00046693-exon-scaffold_116-1575043694:55609..55865Clytia hemisphaericaexon
TCONS_00046693-exon-scaffold_116-1575043694:55081..55350TCONS_00046693-exon-scaffold_116-1575043694:55081..55350Clytia hemisphaericaexon
TCONS_00046693-exon-scaffold_116-1575043694:54578..54676TCONS_00046693-exon-scaffold_116-1575043694:54578..54676Clytia hemisphaericaexon
TCONS_00046693-exon-scaffold_116-1575043694:51758..53124TCONS_00046693-exon-scaffold_116-1575043694:51758..53124Clytia hemisphaericaexon
TCONS_00046693-exon-scaffold_116-1510915933:65169..65380TCONS_00046693-exon-scaffold_116-1510915933:65169..65380Clytia hemisphaericaexon
TCONS_00046693-exon-scaffold_116-1510915933:57755..57856TCONS_00046693-exon-scaffold_116-1510915933:57755..57856Clytia hemisphaericaexon
TCONS_00046693-exon-scaffold_116-1510915933:57422..57521TCONS_00046693-exon-scaffold_116-1510915933:57422..57521Clytia hemisphaericaexon
TCONS_00046693-exon-scaffold_116-1510915933:56983..57173TCONS_00046693-exon-scaffold_116-1510915933:56983..57173Clytia hemisphaericaexon
TCONS_00046693-exon-scaffold_116-1510915933:56676..56798TCONS_00046693-exon-scaffold_116-1510915933:56676..56798Clytia hemisphaericaexon
TCONS_00046693-exon-scaffold_116-1510915933:56022..56043TCONS_00046693-exon-scaffold_116-1510915933:56022..56043Clytia hemisphaericaexon
TCONS_00046693-exon-scaffold_116-1510915933:55609..55865TCONS_00046693-exon-scaffold_116-1510915933:55609..55865Clytia hemisphaericaexon
TCONS_00046693-exon-scaffold_116-1510915933:55081..55350TCONS_00046693-exon-scaffold_116-1510915933:55081..55350Clytia hemisphaericaexon
TCONS_00046693-exon-scaffold_116-1510915933:54578..54676TCONS_00046693-exon-scaffold_116-1510915933:54578..54676Clytia hemisphaericaexon
TCONS_00046693-exon-scaffold_116-1510915933:51758..53124TCONS_00046693-exon-scaffold_116-1510915933:51758..53124Clytia hemisphaericaexon
TCONS_00046693-exon-scaffold_116-1491911889:65169..65380TCONS_00046693-exon-scaffold_116-1491911889:65169..65380Clytia hemisphaericaexon
TCONS_00046693-exon-scaffold_116-1491911889:57755..57856TCONS_00046693-exon-scaffold_116-1491911889:57755..57856Clytia hemisphaericaexon
TCONS_00046693-exon-scaffold_116-1491911889:57422..57521TCONS_00046693-exon-scaffold_116-1491911889:57422..57521Clytia hemisphaericaexon
TCONS_00046693-exon-scaffold_116-1491911889:56983..57173TCONS_00046693-exon-scaffold_116-1491911889:56983..57173Clytia hemisphaericaexon
TCONS_00046693-exon-scaffold_116-1491911889:56676..56798TCONS_00046693-exon-scaffold_116-1491911889:56676..56798Clytia hemisphaericaexon
TCONS_00046693-exon-scaffold_116-1491911889:56022..56043TCONS_00046693-exon-scaffold_116-1491911889:56022..56043Clytia hemisphaericaexon
TCONS_00046693-exon-scaffold_116-1491911889:55609..55865TCONS_00046693-exon-scaffold_116-1491911889:55609..55865Clytia hemisphaericaexon
TCONS_00046693-exon-scaffold_116-1491911889:55081..55350TCONS_00046693-exon-scaffold_116-1491911889:55081..55350Clytia hemisphaericaexon
TCONS_00046693-exon-scaffold_116-1491911889:54578..54676TCONS_00046693-exon-scaffold_116-1491911889:54578..54676Clytia hemisphaericaexon
TCONS_00046693-exon-scaffold_116-1491911889:51758..53124TCONS_00046693-exon-scaffold_116-1491911889:51758..53124Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_116supercontigscaffold_116:51758..65380 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.37832	3.69461	37.4217	51.2276	43.2561	37.161	27.5552	33.2984	15.3201	11.4843	15.4164	18.4072	13.4946	13.2365	10.1319	14.4815	15.505	11.3278	8.57025	8.49881	11.7394	10.1419	9.59767	11.3196	24.5772	21.8353	7.54275	7.77781	6.59045	8.85479
Blast
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BLAST of TCONS_00046693 vs. Swiss-Prot (Human)
Match: TF2AA (Transcription initiation factor IIA subunit 1 OS=Homo sapiens GN=GTF2A1 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 4.116e-22
Identity = 41/55 (74.55%), Postives = 49/55 (89.09%), Query Frame = 3 
Query: 1317 DEEQADLFDTDNVVVCQYDKIARTRNRWKFHLKDGIMNLNSKDFVFHKANGDAEW 1481
            DEE  +LFDT+NVVVCQYDKI R++N+WKFHLKDGIMNLN +D++F KA GDAEW
Sbjct:  322 DEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSKAIGDAEW 376
The following BLAST results are available for this feature:
BLAST of TCONS_00046693 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TF2AA4.116e-2274.55Transcription initiation factor IIA subunit 1 OS=H... [more]
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