TCONS_00046708 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046708
Unique NameTCONS_00046708
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length574

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046708 ID=TCONS_00046708|Name=TCONS_00046708|organism=Clytia hemisphaerica|type=transcript|length=574bp
TTTATAGTTTTAGCATATCAATGAAAGTCCAACAAAAGACATCGAtcgat
taaaaatgaaaataaagattacaggaaaaatcatattcaaaaCTATGCCA
ACCCACATACCAAATGGTTCTTTActaaaagtcaaattttgtgACGTTTC
CTATGCTGACGCTTCTGCGATTACTTTGGGAATAAGTGAGCAAGAAATTC
ACGGATACAAATTTGGAGATATtttgttttatgaaattgaATGTGATAGG
CCTGGCCATGATTGTGGCTTCGTTACCTCTATGGGCGCTGTTTTGAATAT
GGGTTGGAAAGCATATGGTGGTGAATGGATACGGGAGGGAGACTATTTGA
ACAACACACGACATGTTATACACGTTAAAGATGAGACGCAAAATGAATTT
TCACAAGACATAGAGGTGGTTCACTATGTGTGAGTTTGGCATCATAGAAA
TATACCTAGATATATATACCTACCTCATAACCTACATTTTTATTATCTAA
ATAAAGTataatgtttcaaaaaaaattggcagtctgcacattttgataaa
atgatcTTGAAGGAGaaggggggg
Run BLAST on NCBI

protein sequence of TCONS_00046708-protein

>TCONS_00046708-protein ID=TCONS_00046708-protein|Name=TCONS_00046708-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
MKIKITGKIIFKTMPTHIPNGSLLKVKFCDVSYADASAITLGISEQEIHG
YKFGDILFYEIECDRPGHDCGFVTSMGAVLNMGWKAYGGEWIREGDYLNN
TRHVIHVKDETQNEFSQDIEVVHYV
Run BLAST on NCBI

transcript from alignment at scaffold_116:487204..488266-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046708 ID=TCONS_00046708|Name=TCONS_00046708|organism=Clytia hemisphaerica|type=transcript|length=1063bp|location=Sequence derived from alignment at scaffold_116:487204..488266- (Clytia hemisphaerica)
TTTATAGTTTTAGCATATCAATGAAAGTCCAACAAAAGACATCGATCGAT
TAAAAATGAAAATAAAGATTACAGGAAAAATCATATTCAAAACTATGCCA
ACCCACATACCAAATGGTTCTTTACTAAAAGTCAAATTTTGTGACGTTTC
CTATGCTGACGCTTCTGCGATTACTTTGGGAATAAGTGAGCAAGAAATTC
ACGGATACAAATTTGGAGATATTTTGTTTTATGAAATTGAATGTGATAGG
CCTGGCCATGATTGTGGCTTCGTTACCTCTGTAAGTGTATTCATACTGTA
TGTTTTTGTACAAAGCTTCGTCATTAAAATTTTTTTTGTGTGAATTACCC
ATCAATTTCAATACTTTAGCTCGAGCTAGAGTTCAAGGCATTAAAGTCTA
TTTCAAATTAAGCTGGCAGTTTAAATCGCTTTCTTTTTTTATAATACTCC
ACTCATGTTTGTTTTTTCAACGAGCACGAAATCGCTACTTGATTCAAATT
CTATAGTTATTGAGGTTTGAAAAAACACTGCCAGCCAATGACACTAATGA
CATTTGATGCAGGGGTTCAAACATTTTCAAACGCTTGTTTTATTTGTAGA
AGTTTCTTGGTAATTCAAGGTAAGAACTAAGCCTGCATTGATTTCAATCT
CTGGAAGATTGTATTTACACTGCTGTTTTAACAACAACCTTTTGCTATTT
CAATAGATTGCTAAAATTTAGATCAAGTTATATAAGAAATCATGGGTCAA
TTTTGTTTGCATTTTTCAGATGGGCGCTGTTTTGAATATGGGTTGGAAAG
CATATGGTGGTGAATGGATACGGGAGGGAGACTATTTGAACAACACACGA
CATGTTATACACGTTAAAGATGAGACGCAAAATGAATTTTCACAAGACAT
AGAGGTGGTTCACTATGTGTGAGTTTGGCATCATAGAAATATACCTAGAT
ATATATACCTACCTCATAACCTACATTTTTATTATCTAAATAAAGTATAA
TGTTTCAAAAAAAATTGGCAGTCTGCACATTTTGATAAAATGATCTTGAA
GGAGAAGGGGGGG

Coding sequence (CDS) from alignment at scaffold_116:487204..488266-

>TCONS_00046708 ID=TCONS_00046708|Name=TCONS_00046708|organism=Clytia hemisphaerica|type=CDS|length=756bp|location=Sequence derived from alignment at scaffold_116:487204..488266- (Clytia hemisphaerica)
ATGGGCGCTGTTTTGAATATGGGTTGGAAAGCATATGGTGGTGAATGGAT
ACGGGAGGGAGACTATTTGAACAACACACGACATGTTATACACGTTAAAG
ATGAGACGCAAAATGAATTTTCACAAGACATAGAGGTGGTTCACTATGTG
TGAATGAAAATAAAGATTACAGGAAAAATCATATTCAAAACTATGCCAAC
CCACATACCAAATGGTTCTTTACTAAAAGTCAAATTTTGTGACGTTTCCT
ATGCTGACGCTTCTGCGATTACTTTGGGAATAAGTGAGCAAGAAATTCAC
GGATACAAATTTGGAGATATTTTGTTTTATGAAATTGAATGTGATAGGCC
TGGCCATGATTGTGGCTTCGTTACCTCTATGGGCGCTGTTTTGAATATGG
GTTGGAAAGCATATGGTGGTGAATGGATACGGGAGGGAGACTATTTGAAC
AACACACGACATGTTATACACGTTAAAGATGAGACGCAAAATGAATTTTC
ACAAGACATAGAGGTGGTTCACTATGTGTGAATGAAAATAAAGATTACAG
GAAAAATCATATTCAAAACTATGCCAACCCACATACCAAATGGTTCTTTA
CTAAAAGTCAAATTTTGTGACGTTTCCTATGCTGACGCTTCTGCGATTAC
TTTGGGAATAAGTGAGCAAGAAATTCACGGATACAAATTTGGAGATATTT
TGTTTTATGAAATTGAATGTGATAGGCCTGGCCATGATTGTGGCTTCGTT
ACCTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029800XLOC_029800Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046708-proteinTCONS_00046708-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046708-exon-scaffold_116-1575043694:487987..488266TCONS_00046708-exon-scaffold_116-1575043694:487987..488266Clytia hemisphaericaexon
TCONS_00046708-exon-scaffold_116-1575043694:487204..487497TCONS_00046708-exon-scaffold_116-1575043694:487204..487497Clytia hemisphaericaexon
TCONS_00046708-exon-scaffold_116-1510915933:487987..488266TCONS_00046708-exon-scaffold_116-1510915933:487987..488266Clytia hemisphaericaexon
TCONS_00046708-exon-scaffold_116-1510915933:487204..487497TCONS_00046708-exon-scaffold_116-1510915933:487204..487497Clytia hemisphaericaexon
TCONS_00046708-exon-scaffold_116-1491911889:487987..488266TCONS_00046708-exon-scaffold_116-1491911889:487987..488266Clytia hemisphaericaexon
TCONS_00046708-exon-scaffold_116-1491911889:487204..487497TCONS_00046708-exon-scaffold_116-1491911889:487204..487497Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_116supercontigscaffold_116:487204..488266 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.9351	2.18005	1.94762	2.69177	4.45668	3.72888	8.37266	5.17595	4.58685	5.17427	3.05275	3.04251	3.03828	4.29655	2.53888	2.9023	2.40965	6.82996	5.47623	18.3808	2.66432	2.88786	1.89329	2.22907	1.2523	1.95589	11.8864	8.38743	2.14787	1.09916
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046708 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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