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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046715 ID=TCONS_00046715|Name=TCONS_00046715|organism=Clytia hemisphaerica|type=transcript|length=2032bp TAcgaaatagaataaaaacaaatatggtagcatcgaaatcgaaagtactT TCTAGCATCAACACATCAACCTGCATCAACACACAAAACCAGATGATGGC GCATTTAGACTCTGTTGAGTTTGTTATTATATCAATTGGAAGCAACAATT CAGCTCTAAAGGACATATTAAAAGAACTTGATCctcatgatgaaattgaa agCAACACTTCATATACTTGGCActtaaaaaacaaatatttcaagGCTGA CGTCAACATTTATTGCTGTAGTAGAGAagagtttttgaaaaactttttag aatttcgaaaattggagGCTGTATTATTCACTTTTGATGCTGCATCTAGT GATTcgttttgtgaaattgaaaaaacatcacaccttttcaaagaagatGA GAGCCCAGAGCTTCGGATGGTCTGGGAAACAAGCAATAAAAGATTGGAAG atGCAACaaaggataaatatttttcatggtgTTTGGATCACCAATTCGAG CTGATCGAAAATATGGAGACTGGAGAAGAGGCAGATGAAGatagtTTTGG TGTGAAGTATGGCGTGGACAGGATAAAAGAAGCCTTGCGTTCACATATGT GGGCCAACCATCAGATGATAGAGCCAGATGAAAAACCGAAAAAACCTTCA ACAACAACAGTGCATAACGAACAACAAACAATGACAGAACAGAACGAAGA TCTTTTTCACGATAATGAATCATTCGAAGATCTTTTCAACAAATTACACG TTATGAAAGAGCAAGCACAAAACCTCGATGGAGACGCACGGAAAGATTAT GCTGAAAAAGTAGCGTACGCTTTCATGGAAGCACTTGGTATTGATGATGG AGAAAGTGATTCTGAAGATAGGTAATCAATTGAGTAATAAGCTCATTTAT TGAAAATGGGAGGAATTATACTCTCCACTTGTACGCgtttcgatcgcact ttttcaagcaaagcttCCAAGCTATtggttaaaagaaaaatgaagcaact gcgttggcgcgatctgacgtaacgattgaaaaaagttgataaaTGTGTCC AACTGATTTTTTCGAGcacgcgctacatttttatgacgtaatcttttttt tcaagcaaaaaaaatattagcCAAAAaatgcgatcgcagcgcgcgcaagt gaaGGCCGGCCTTTAAACCGATATACTTTTTCGAGATTAATAACGTACTG AAGCATGGGCAGATCATTTTGTGTGATGAAAGATGGATCTCAAAGGCTGC CAAAATTATTAAGTTATTCAAAGGGATTGGAACGGTGGCAAGATGCATGA ATTATGCTTTGATGATTACAAGAACATAATTTATATGAGAATATAATGAA GTCGTGATGGAAATTCGTTGTTTAAACATATAACAGTATGTTGTATAGAA TTGTATATTTACAGATAATATGTATGTATGttatccccgggggggggggg ggcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNttttccgacccttacagtgcattttaaacatattggaaaaggtaccc ttaggacccgcacatacccgtcggtccttttgcccagctgccccccggGA TGTTATCCCACTTTATCCCAAGTTTTTCATTGCCCATTTTTTCGCCTTTT TATGACTTACCTTAGACGTTTGtttacaaaataatttatttggaaaaaag aaatggagaaaaaatCCGTATAAAAGTTggtattttttcgaaaaattaaa aaaaaacatttgcttGTTCATCATGAACTTATTCATGGCTTCATTGATAA TTCATGAGTAAGCGTAAGTCCCATTTGAAATTGGTCACTGCATGCCtgag aaataatcattttaccATATATGGTAGAATTAAGAACTTTTATATGTTAT ACTaaacgctttttataagaacacaaggtttcgatggccaaaatatagaa caagttaagaacattttgaggctttgtgaactctaaaacacccaatttct taggaaaatggacaaaaactcacaaaatggtg Run BLAST on NCBI transcript from alignment at scaffold_116:600638..607972- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046715 ID=TCONS_00046715|Name=TCONS_00046715|organism=Clytia hemisphaerica|type=transcript|length=7335bp|location=Sequence derived from alignment at scaffold_116:600638..607972- (Clytia hemisphaerica) TACGAAATAGAATAAAAACAAATATGGTAGCATCGAAATCGAAAGTACTT
TCTAGCATCAACACATCAACCTGCATCAACACACAAAACCAGATGATGGC
GCATTTAGACTCTGTTGAGTTTGTTATTATATCAATTGGAAGCAACAATT
CAGCTCTAAAGGACATATTAAAAGGTGAATTTTATCAGCATATTGGTGTA
AAGTAGTAGAAACATTGAAAAATATTGACTTCAAACATAGGTAGCGTCTG
AGACAACTCTGATGCTGCAATATATTAAAATTTCCTCAGACCTCACTTCG
CGCGCGCCCTCCTTTAAACAACCTTACTGGCCAACGCACCGGGAAGTCCA
GTGTGTTTGTCCGTGCCAAAATCCCTCAGCCAGACGGGAACCTTTTGTCT
GGTGTTATGTTAATTTTTTGAACTTCTTGACACCGGAGACAAAGTTTGTT
TAAAAACAATAATGTGCACCGGGCCAGTCTTGAAAGAAGAGAATATTTAC
GCCAGAGATTTCTTGGCGTAGCCTTTGTTTAAGCCTATGAAATCCAAAGT
CTGTGCCAGAGATATCCGGCATACATGCCTTATTTTCCAGATTGGGCACC
GGGCGGACGCACTGGTTGAGATAGATTGTCTGGTGTTAAAAAGTTTTACT
TGAGATTTGTTCTTTTCTAAAGAAGAGATTTTTTTTTTTTAATCTGAAAA
TAATTTGAATGTCATTAATCATTAAACATTAAAAAAGATGAAAAAAAAAG
AAGAGTAAGAGCAGAAATTATGCAATAGACCGCTGTGTTTGCCTAAAGGA
GTATTATTTCTATGTTAAGTTTTCCTGTCTTTTAAAGCTTCAGCATGATA
AAAAATGTGCCCAAGACCACCTATGTCTAATATTTGCCAAAAATTGGTCT
TTTTCTTATCTACAGTATGTCACTGCTCAAAAGACCAATTTTTGGTAGAT
ATTGGACATAAGATAATAAGACAGAATATAAACCCTAAACAGACAAAACT
CTGATCCTTTCAAACAAAATTTGGTCTTCTCAGATGCAAAGTTTCAATTT
TTATCCAAACCCTGCCAAAACAGATTCAACTTTCAATATCTAGTAAATCC
CTGCAGATTTTTTTACATTTTGAAAAAGTGACTCTATAGTGGCACATCCT
ATACAAAATTTTGTCCGAGGGGACGGACATGGCAGCTCTCAATATCACAG
TAAATTAAAAAAACCTAAACTAAATTGAAATTTATAACAAAAATGGCCTG
TGAGGTAATTGATGATCAAGGATAATTTGAAATTTTTCTACTAACAGTAA
ACAAGTAATTAACTTTAAACAATAAATCTCAACAAATAATATAAATACAG
ATAAGACATACCATTTATCAGTAGAAGGTTCTCCTTCATTGATTAATCAT
GTCAAGAAAATATAGTAAAGCATTTTAAAGAGAAGACTTGAGCACTTTGC
TCCAAAACCTACTTACAAGTAATACAATTAAGTAGCAGGCAACCTAACTG
GCAAAAGTGAAGTTATATCATAGTATGTTGTTTGATGCTGATTCTTGTAA
TATATTTGCATAAGACAATGAAGCCTAATCTCGCAAATTCTACATAAAAA
TTACGAAAATGAAAAAGTTTTAAATGTGCTGTCAGCAATTAATAGGTTAA
AACATCTTGTCAAGTAAAACCAAAAGTATTAGATTAAAATATGAGTTAGA
AATGTATAAAAAATTTGTTTGTTAAAATCTAGTATAAAATATAAATAAGC
TAAGATACAAAATGATGTTTAATGTCAAAATTTAACCTTAATCTTTATAT
TTCAATTCAACTTTAGAACTTGATCCTCATGATGAAATTGAAAGCAACAC
TTCATATACTTGGCACTTAAAAAACAAATATTTCAAGGCTGACGTCAACA
TTTATTGCTGTAGTAGAGAAGAGTTTTTGAAAAACTTTTTAGAATTTCGA
AAATTGGAGGCTGTATTATTCACTTTTGATGCTGCATCTGTAAGTATGCA
ACTCTTTATTTATTCTAAAAGTTTTTTCTTCATCCATACACTTATTGGTA
TAAAATAAAGGCTCAAAAGTAATCATAAATAGTAAATCTATCTGAATCTA
TCTATATATTTTAAAGTATTAAAAAGCTGTCCTAAGACCCATTATCTATA
CATACAAATAAGAAGATTTTAAGAAAATAAAAAAGTGTATAAAATTTTAG
CAATTCCAATAAGAGTGACACAAAGAAATTAGCTCTGGATCTTTATCATT
GTGTATAAAAATTAATCATAAAATTATTATTTTAAGCCTGTGCTGTTTTA
GCCTGTTCTTCAAGAAAAAAAAATGTTCTTTTTTTAGATTTTAAGCCCTA
GAATTGATAAATTATCTTATTTTGTTTCATTTTCATCATAAGAGTGATTC
GTTTTGTGAAATTGAAAAAACATCACACCTTTTCAAAGAAGATGAGAGCC
CAGAGCTTCGGATGGTCTGGGAAACAAGCAATAAAAGATTGGAAGGTAAA
TACTCTGATCTCCATTTTGACAACCCTGTTGCTAATTTTGTTTTTTAATT
TTCTGCCCCGGACATTTTTCAATATTTTGATCTTTAGCACTTTAAAGTAT
TTTTCATTTTTTTAAATACAAAGTGCCTTAAAAAGGGTTTGAGACGTTTG
ACTAAGCACAAATATCTTATATAAGACACTAGAGCTCTNGGATTAGAAGG
TAAATACTCTGATCTCCATTTTGACAACCCTGTTGCTAATTTTGTTTTTT
AATTTTCTGCCCCGGACATTTTTCAATATTTTGATCTTTAGCACTTTAAA
GTATTTTTCATTTTTTTAAATACAAAGTGCCTTAAAAAGGGTTTGAGACG
TTTGACTAAGCACAAATATCTTATATAAGACACTAGAGCTCTTGCTTCCT
TATCTTGAATGAAGGGACGTCACAATTTAGCTTGCGCCTGCTTGAGGGAG
CCTTGAAATATTGATGTCATTGCAGTGTCAAAAAAACTTTAACAGTCAAG
GTTTCTACTGTGGTCTGCTATTAGCAAAGATGGCGGATTATTTAGCTTTA
TTCTGTCTTGCTTTGGGAGGATAGGGTGGCTCTATCTAGTGTTTCATATA
AGATATCTGTGGGTTGAAGGGATGGGGTTGTTCTGCTGCTTCCATATGGA
TACAAAACAAACAATAGAGAGAAATTTATTTTAAAATAAAAAAACATTAG
TACAAAATGCTACCTAACAGTCCATGTTCCAAGCACTACAAATTTGGTTT
TTCAATGTGAACACGGATTTTATTATTTACTTGACTAAAATTCTAAACTT
TTGGGAACTGAAATGTACTTTAAGTTATATTTATTTCTTTTGTTTTTGTT
TAGATGCAACAAAGGATAAATATTTTTCATGGTGTTTGGATCACCAATTC
GAGCTGATCGAAAATATGGAGACTGGAGAAGAGGCAGATGAAGGTATAGA
ATTTATCATATTCCTTTTTCATTCAATTTTTAAGAATCGATATGATTCCT
AAAAACGAAAAGTACCCTTTTTTAACCTTCGAAACTGAAAATATTTTAAG
TTTTTTTACCATCTCAAAAAAGTTCCATAATCCTATCTACTTTCGAACCA
ATCACATGCGGTTGAATCCTACGAAAGATGCTACGGATCATAAGGGTTGG
CCCATCCTGTATGGCATGAAACTTTGAGTATGAAATTAACTTATTCAAAC
TAGTAAAAAACAGATTGCAAATGTGTTTAGCCTTCTTTATACATTCGACA
TTGTATTCAATTTTCTGCAAGACTCGTGAGTGGATAGTGTAGAAATCTAA
GCTAGTAGACTCACGCACTAGGATAAATCTGATGGTAAGTTGTGACAAGT
TGTATTATAATTTTGTCGGAAAAGTGATTGAAAACGAGGACCGTAACGAT
GTTGCTTATTCCAATAAGAGTGTTCTTAACGTAGTAGTCCCATTTTATGA
GAATTTGAGGCCGCAGCATGAAGGTAGAGCATCCAGCTACGGTGTGCAAG
ATTGTGGGTTCGATCGCCAGCAAATGTCCAAAACAAACTTGTAAAACAAT
TGAAATAATCAAAATCAGCCATATTTGTTTTTATTTTTTATTTTGACATT
TGACATTTGTTTTGATTTTGTATCCCGCTGCAAATGGTTTGTTTACAAAT
TTCGTCAGTACTTTTATGTCCCTTTAAGCCTGACTATTCGATCGATGATC
AATGTAGAGCCACGATTTATTAGTTCTCAGAGAACAAAAAATATGATTTG
TAATTCTTTTTTTTTTTCAGATAGTTTTGGTGTGAAGTATGGCGTGGACA
GGATAAAAGAAGCCTTGCGTTCACATATGTGGGCCAACCATCAGATGATA
GGTTCGTTGTAGTACAGACTTCGTACTTAGTACAAAATGGCACTTAATGC
CTCTCAGCTTGATGCTTAGCAATTAAGAGAAAGGATCAAGGGGAAAGTCG
AGCAATCCAGGGAGAAAGAGTGTCCCCTTCTCCTACCTTCAGGTAGATAG
CTATCGAAAGGGGAGCCCTCGGTTCGCCTCCGACTGCGGTCACAGACTTA
CTTAATTATCAGATGCCTAACAATTACTTTATTCAATCTCATTAGTCTTA
CTGAAATTCCAAAAAATTTTAAAAGCCCATTTTTTACCTTAATTTATTTT
TCGAGTTTTTCAAGCATAGTTACACCCCTTGTTTCAACTATCCAATTCGC
TTTTAAATGTACACTTTTTCTCGCTATCATGTGAAAACCACGTCGGCGTT
AGTAGAGTAATTCCCTTTAGAGTGGTTTCTATATTGTAGTAAGAAAGAGT
ACACATGTTTTCTTTATTATAAACATATTTAAAGCACTTATAAGCATATA
TCTAGGCTCGGATATGGCAGAAATTTAAGCATATGATAAGCATTACCTTG
AGCCTATGAAAAATGTATTTTCCTGTTTTTGGCTGGGATTTTACAGATTT
TCGGAATTTCTCTAAGATTTTGCTTGGGATATAATAATCCATATAAGCTT
TTTTCAGCCTTGTCAAGCCCTCGACCTAAGCATCTCCGAGCCTGTTTTCA
AATTTTTGCATGCTTATAAAAATAACATGTACACTCAAAGTGAAACTTTA
TGAATTTTTTTCTCATTCTTCACGTTTTCTTTTATTAATTAAGAGCCAGA
TGAAAAACCGAAAAAACCTTCAACAACAACAGTGCATAACGAACAACAAA
CAATGACAGAACAGAACGAAGATCTTTTTCACGATAATGAATCATTCGAA
GATCTTTTCAACAAATTACACGTTATGAAAGGTAAAAACCAAACCTCGGC
CTAGCGAACACCTTACAAAAAACTGGGATTTTTCATCCCGTTTCTTAGTG
AGTTCCACTTTGACGATTTTCGAAAAATAGAAGCCTTTCAAGTGCTTTGA
AGCAAATTCGATTTCTTTGCTACTGCAAGAGCTTCGATTATTATATTGAC
GTCAAAAAGTCGAATGTTTGGAGCCCGAAAACCTGGGCTCAAAACATTCG
AAAAAGTCGCAAAGTGGAATAGACGTTAATTGCGTAAAAAACGCGGGTCG
CGTCTAATATAGGCTAACCTCGGCCTTTCCTAATACTAATTTCGTTTCGC
AGTGCTGCAACTCCGTAGACAGCTGGATTTTATAGCATGAATTTCCGTGC
CAAACGAGCCTTTTCGAAAGCCTGTACCAGAAATTTGGATTTAAATTTTA
GATCTTCCGCACAGATTCACCAAAGTCGGTTGCAATACTGATATAAAGAA
ATTTCCTACTTTAATCATTACTAAAAAATACTTGATTCCAAGCTACTTTA
CACAGACTCTAGGTCTAGACAGTCGTCTTTCTGTCTTGCCTTCCGATTTT
TTTAAAAAAGTCGGCGAAGAGACAAGCTTTTAAAGTCAATGCAATGCCTT
TTACGACCTCAATATTTTGACTGTCTTCACTTCAATCTTTTTGAAAGAAA
AATTTGAAACTGCCTCATTCTCAAATCGTATCGTGGGCAGAAAGTGGACC
GTTTCAATTTGGTCTAACTTTGAAATATAAGGAAGACCATGTGTTTTGTA
TTGTGTTTTTAGAGCAAGCACAAAACCTCGATGGAGACGCACGGAAAGAT
TATGCTGAAAAAGTAGCGTACGCTTTCATGGAAGCACTTGGTATTGATGA
TGGAGAAAGTGATTCTGAAGATAGGTAATCAATTGAGTAATAAGCTCATT
TATTGAAAATGGGAGGAATTATACTCTCCACTTGTACGCGTTTCGATCGC
ACTTTTTCAAGCAAAGCTTCCAAGCTATTGGTTAAAAGAAAAATGAAGCA
ACTGCGTTGGCGCGATCTGACGTAACGATTGAAAAAAGTTGATAAATGTG
TCCAACTGATTTTTTCGAGCACGCGCTACATTTTTATGACGTAATCTTTT
TTTTCAAGCAAAAAAAATATTAGCCAAAAAATGCGATCGCAGCGCGCGCA
AGTGAAGGCCGGCCTTTAAACCGATATACTTTTTCGAGATTAATAACGTA
CTGAAGCATGGGCAGATCATTTTGTGTGATGAAAGATGGATCTCAAAGGC
TGCCAAAATTATTAAGTTATTCAAAGGGATTGGAACGGTGGCAAGATGCA
TGAATTATGCTTTGATGATTACAAGAACATAATTTATATGAGAATATAAT
GAAGTCGTGATGGAAATTCGTTGTTTAAACATATAACAGTATGTTGTATA
GAATTGTATATTTACAGATAATATGTATGTATGTTATCCCCGGGGGGGGG
GGGGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTTTTCCGACCCTTACAGTGCATTTTAAACATATTGGAAAAGGTA
CCCTTAGGACCCGCACATACCCGTCGGTCCTTTTGCCCAGCTGCCCCCCG
GGATGTTATCCCACTTTATCCCAAGTTTTTCATTGCCCATTTTTTCGCCT
TTTTATGACTTACCTTAGACGTTTGTTTACAAAATAATTTATTTGGAAAA
AAGAAATGGAGAAAAAATCCGTATAAAAGTTGGTATTTTTTCGAAAAATT
AAAAAAAAACATTTGCTTGTTCATCATGAACTTATTCATGGCTTCATTGA
TAATTCATGAGTAAGCGTAAGTCCCATTTGAAATTGGTCACTGCATGCCT
GAGAAATAATCATTTTACCATATATGGTAGAATTAAGAACTTTTATATGT
TATACTAAACGCTTTTTATAAGAACACAAGGTTTCGATGGCCAAAATATA
GAACAAGTTAAGAACATTTTGAGGCTTTGTGAACTCTAAAACACCCAATT
TCTTAGGAAAATGGACAAAAACTCACAAAATGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00046715-exon-scaffold_116-1575043694:607799..607972 | TCONS_00046715-exon-scaffold_116-1575043694:607799..607972 | Clytia hemisphaerica | exon |
TCONS_00046715-exon-scaffold_116-1575043694:605984..606156 | TCONS_00046715-exon-scaffold_116-1575043694:605984..606156 | Clytia hemisphaerica | exon |
TCONS_00046715-exon-scaffold_116-1575043694:605478..605580 | TCONS_00046715-exon-scaffold_116-1575043694:605478..605580 | Clytia hemisphaerica | exon |
TCONS_00046715-exon-scaffold_116-1575043694:604530..604619 | TCONS_00046715-exon-scaffold_116-1575043694:604530..604619 | Clytia hemisphaerica | exon |
TCONS_00046715-exon-scaffold_116-1575043694:603622..603702 | TCONS_00046715-exon-scaffold_116-1575043694:603622..603702 | Clytia hemisphaerica | exon |
TCONS_00046715-exon-scaffold_116-1575043694:602692..602829 | TCONS_00046715-exon-scaffold_116-1575043694:602692..602829 | Clytia hemisphaerica | exon |
TCONS_00046715-exon-scaffold_116-1575043694:600638..601910 | TCONS_00046715-exon-scaffold_116-1575043694:600638..601910 | Clytia hemisphaerica | exon |
TCONS_00046715-exon-scaffold_116-1510915933:607799..607972 | TCONS_00046715-exon-scaffold_116-1510915933:607799..607972 | Clytia hemisphaerica | exon |
TCONS_00046715-exon-scaffold_116-1510915933:605984..606156 | TCONS_00046715-exon-scaffold_116-1510915933:605984..606156 | Clytia hemisphaerica | exon |
TCONS_00046715-exon-scaffold_116-1510915933:605478..605580 | TCONS_00046715-exon-scaffold_116-1510915933:605478..605580 | Clytia hemisphaerica | exon |
TCONS_00046715-exon-scaffold_116-1510915933:604530..604619 | TCONS_00046715-exon-scaffold_116-1510915933:604530..604619 | Clytia hemisphaerica | exon |
TCONS_00046715-exon-scaffold_116-1510915933:603622..603702 | TCONS_00046715-exon-scaffold_116-1510915933:603622..603702 | Clytia hemisphaerica | exon |
TCONS_00046715-exon-scaffold_116-1510915933:602692..602829 | TCONS_00046715-exon-scaffold_116-1510915933:602692..602829 | Clytia hemisphaerica | exon |
TCONS_00046715-exon-scaffold_116-1510915933:600638..601910 | TCONS_00046715-exon-scaffold_116-1510915933:600638..601910 | Clytia hemisphaerica | exon |
TCONS_00046715-exon-scaffold_116-1491911889:607799..607972 | TCONS_00046715-exon-scaffold_116-1491911889:607799..607972 | Clytia hemisphaerica | exon |
TCONS_00046715-exon-scaffold_116-1491911889:605984..606156 | TCONS_00046715-exon-scaffold_116-1491911889:605984..606156 | Clytia hemisphaerica | exon |
TCONS_00046715-exon-scaffold_116-1491911889:605478..605580 | TCONS_00046715-exon-scaffold_116-1491911889:605478..605580 | Clytia hemisphaerica | exon |
TCONS_00046715-exon-scaffold_116-1491911889:604530..604619 | TCONS_00046715-exon-scaffold_116-1491911889:604530..604619 | Clytia hemisphaerica | exon |
TCONS_00046715-exon-scaffold_116-1491911889:603622..603702 | TCONS_00046715-exon-scaffold_116-1491911889:603622..603702 | Clytia hemisphaerica | exon |
TCONS_00046715-exon-scaffold_116-1491911889:602692..602829 | TCONS_00046715-exon-scaffold_116-1491911889:602692..602829 | Clytia hemisphaerica | exon |
TCONS_00046715-exon-scaffold_116-1491911889:600638..601910 | TCONS_00046715-exon-scaffold_116-1491911889:600638..601910 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_116 | supercontig | scaffold_116:600638..607972 - |
Blast
The following BLAST results are available for this feature:
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