TCONS_00046716 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046716
Unique NameTCONS_00046716
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1622

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046716 ID=TCONS_00046716|Name=TCONS_00046716|organism=Clytia hemisphaerica|type=transcript|length=1622bp
GGAATACACAACAACAACACAGCCAACTGTCAAGTCTGGGTGTGGCTTTT
TACCGGACGGCCATCTAGCATACATCAGTCCAGAACTCATGCGAACATTG
AAATTATGTGGTATCTATTATCTGACGGACAAACCGGACACGCCAAAAGC
TGATGTTTACGCTTATGGGACACTACTTTACGAGATTTTCTTGGGACGAC
ATCCATACAAAGGACTTGAACCACAAACATTGATATGGAAGGTTTCCAAA
GGTCATGTGGCTTCAGTTGATGCTACCGATTTCCCGCTCGTTTTCAAGGG
GTTGATTCAATCATGTTGGCAGCAAAGAATCGAGAAGCGACCAGAATTTC
AAGAAATTATCAACAACATGAAGAAGATAAACATACCAcgaTCATTACAA
AAGAAGTTGAGTTTATCAGACTCAGGTGCCATTAACaaagaacaacaaaa
acaaatcttGAACCATCAAAATGCTTTTCGAATTGATGCCACCACGCCCC
AACATACCGCCCAATGGCGTAAAACATCAAACCTGAGTTGAAATGGATAG
TTAGCTTTTAATCAATGAAGTACTTTGATCTTCCGAGAGTCATATGACAA
TATCTAGGCTGTCGCCAAAAAAATCATGTTTGCTTTTGCTTTGtcatttt
caaatattggtATTGTAGATATAATTTGAAAATACGTCTTTTTGGACATA
GCCGCCAATTAccgtgcgggcatttttttgtccgctttatcccactaaaa
ccgtcccagtccttttttcgcacctatagacaattatagaaaaaggtgtc
aaaaaaggattggatcgagtttggGTTTATAATtactgaccgcgcgacta
cggtcgaaaaggtgtattaaaagaaaatggatataaaattttgaatacaa
GAAACTCGTTTCAACAACAAACATTACAAGTATAATAGTTAATTGAAAAC
AGACTGTTTTTAATGTACAGACATATTATGGTAAGATGCTTGACCGACAA
GAAACAGCTATGGAAATCTGGATGGCACCACGtgattgaaaatattatat
tcatgacgtaatgttttctacggaaatacccggttttagccagtagtggc
aaatttaaactagaaaaaagttgtataaGATTTGCCACtgctggcaaaaa
ccggggtttttccgtagaaaatattacgtcatgaatattacAAATTATTT
CTCCATTGCAGCTTTCGTTAACTTACTTGAGTCTCCTTTTAAATAGATTT
ATCAAGAATTAAATTTTGTGGATGGCAGTAGAAAAATAACTTTGGCAGGG
ACTTATTTTGGTGGCTTCCAGGTAAAATTGGTCGTTAACCGGTAATAAGA
cagttttgttacttttttctaaagaacgcgtcatttttattacttcaaat
gaccactTATTAAagtataaaaactccatctcatctgcaaAATTTCTGAT
CGGTATTTTAAAGCTGCTCGTTTATGCTGGTCATTCGACGAGGTAGCAGA
TACCCTTCAGAAGATCATTTTTAGACCTAAAatgtaatacacgttttttt
tttataagaacgtcaaaaattttcgaagccttcggatgttcttagttttt
tggatttgaagcctaaaaatgt
Run BLAST on NCBI

transcript from alignment at scaffold_116:625484..629609-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046716 ID=TCONS_00046716|Name=TCONS_00046716|organism=Clytia hemisphaerica|type=transcript|length=4126bp|location=Sequence derived from alignment at scaffold_116:625484..629609- (Clytia hemisphaerica)
GGAATACACAACAACAACACAGCCAACTGTCAAGTATGTAATCCCGATTT
TCCGATTTCCTTCATCCGCCTGATTTAGTAAAATTCTCTTATACCTTATC
GGGGAAAACTTCGTCGGGGAAAAGTGATGAAATTTTGGCCAAGTGACGAA
TATTTTTCCCCGATGAAAATTTTCCCCGACGAAGTTTTCCCCGATAAGGT
ATTGCATTTTTGCCATTTTGAAAAAAGAAAACGGGGATGAAACGTTGAAA
CAAAAACCTTGGGGTGATGGTTAAGTGGAGACGGTAAGGACAGATTTTTT
TATCTTCCAAATTCTCTCTAAGGGTTACACAATCAAAAGGTCGAAATAGT
TTCTCTAAGGATCGGTCTTAGGGGGCTCGGTTGGCAAAAAGCCGACATTC
CCCTAGTACTCCCCTCCCCCGGTAAAAGAAACTTCGTCTAAAGTGTAACT
TTTTAGGAAAGTCACCAAAATTTGCCCAACTTTCCCTGGTATCTCGGTGG
GACGTAATAAGATTTACTAAAGACGTTATAGAGTAGAAATAATTTCTGGA
TGACCGCTACTATTTTTATAATTAGCAGAAATTTGTTTAGGGTATTTTTC
TTCCCTGAAATATTCAAATTTCCCTCTTCTAGGTCTGGGTGTGGCTTTTT
ACCGGACGGCCATCTAGCATACATCAGTCCAGAACTCATGCGAACATTGA
AATTATGTGGTATCTATTATCTGACGGACAAACCGGACACGCCAAAAGCT
GATGTTTACGCTTATGGGTAAGTTAAAATTAGTATTTTTAAGAAACCCTT
GGATATTTTAGTTAATTACTTTTGAAGTAATCACTCACTTTTGTAACCAG
GGCAACTTGCACCAATTTCTGACTTGAGTGATGAACTTTATATAATCGTG
AGTGTACCTTTTGTAAGCGCTGTTACAATCTTATAAAAGCGAACTGATAA
GGGGCTGGATTCGAGTTTGATCATCCTCTTTATTTTCGCCTTTTGTTAAC
AGACTCCTCTTGATCTCATTGATATCGTGGCCTCTGTGCTCTATGAAAGG
CATTCGTAGCCTACCTCAACACGAAGGGTTACTTCAATGGGATTAATTTT
CGTGGGGATTAAATTTCGCGGTTAAGCTCATCCGCGCAAAATTTTAAGAT
TTCGCGGGGAATTAATTTGGCGGATGGTACTACTTTGTGACAATATTTTC
ACGATTTCGTGCCCTGTCAAATCATGCATATGTTAGTTGTTGAAATGCGC
ATGTTAGCGCCTCTTTGATACCAGTACACATTCAAAAAGTATTTGTATTG
AGTTTTGTTCTGAATAATTTCGTGGATAATAATTTGCATGTTGAGAGGGA
TTGTTTTTGTTTTTTTCGATTTCCTAAGAAATTTGCATTAGGACTTAATT
TTACGGATGACACAAAATCCGAGAAATTTAATTCCCGCGAAAATTTTATC
CTATGAAAGTATTTTTTAAGAACAACCCAATAGTTGACGTCAAGAACCTG
GGATATATATGTTGTATTTTTTCGTCTCATAGGACACTACTTTACGAGAT
TTTCTTGGGACGACATCCATACAAAGGACTTGAACCACAAACATTGATAT
GGAAGGTTTCCAAAGGTCATGTGGCTTCAGTTGATGCTACCGATTTCCCG
CTCGTTTTCAAGGTATATTACTTTTTACATGAACATACATTAGTGTGGTG
ATGAGGTCGACCAACCAAGCCACTTCGACGAAAGCAAAAAAATCTCAAAA
AGATGAAAATTCTCCTTAGAAGTGTTGAAATGTTGATGCTTTTGATGATG
TTAATGATGACTTTGTTTAAGCTGGGAACACTATTACACCCTTGTCCCAT
ATTCCTGGTTGGAACTTTTTATCTCAGTGGGGATAAAAATTCCTATTGAA
ATTCCCATGGGGATAGAAATTCTATTGTTCAAAGGTTGAAAAATACAGTA
GGAATGGTTTTAGAGTGCAATTTTTGAGCATGGAATATCGAATGGGGATA
AAATCAAAGTCAATTCTACAGTGGTATTGAAATTCCAGGGTATTTTCCCA
TCGGGGGCGAATTTTTTGCCAAATTTTTCAGTGGAGCTGGTATCCCAGTA
GGTCTATGACACAGGGGTGTACTATTGATTTTCTTTAGAAAGTTTTTGAA
ATATTTCTTTATCCAAAACGATTCTACTCCAAATTATCTTTCCAACCTGT
ATTTACTTCCTTGTTTTAGGGGTTGATTCAATCATGTTGGCAGCAAAGAA
TCGAGAAGCGACCAGAATTTCAAGAAATTATCAACAACATGAAGAAGATA
AACATACCAGTATGTATTTCCCTCAAGATATTTTCCATTTTATGAAAACA
AAACCATCACTCAATAACCACCCAATGAGACCATATCCTGGCAAAAATTG
TCCTGGTGATAAACTTTAGCTGACATCAAACTCCTATAAGAATAAAACAC
TTATTCTCGTCCCCACTGGAAAAAACTGTAACAATTGTAACAGTGATCTA
CTGGAATTTTAATCTTTTACAATTGAATTTCCCTACACACAAATCCTTCG
ACTTCATTTTGATTTATCACCATAGGCTATTAAATACTCACCAGGAAACT
GGACGAACCAAGATGATTTTGATAAGTCTTTGTTCAACTAACCAAAAATC
AGGGCACCTACTTAAACAATCTGAATGGACTATTCCAGAAAAAAATTGTT
CCCCTTATGTTGAGAGGGATTGTTTTTGTTTTTTTCGATTTCCTAAGAAA
TTGTTTCCATCCTTTGTGTTTCCATAAAGCCGCAATATGTTCTTTACTTG
TTCTTAATATTTTGGCCATCGAAGCCTTATTCTTATAAAGTTTGTTCTTA
TAAAAACCGTACATTTTATGTTACTTATGTTCTTATTTTCAGCGATCATT
ACAAAAGAAGTTGAGTTTATCAGACTCAGGTGCCATTAACAAAGAACAAC
AAAAACAAATCTTGAACCATCAAAATGCTTTTCGAATTGATGCCACCACG
CCCCAACATACCGCCCAATGGCGTAAAACATCAAACCTGAGTTGAAATGG
ATAGTTAGCTTTTAATCAATGAAGTACTTTGATCTTCCGAGAGTCATATG
ACAATATCTAGGCTGTCGCCAAAAAAATCATGTTTGCTTTTGCTTTGTCA
TTTTCAAATATTGGTATTGTAGATATAATTTGAAAATACGTCTTTTTGGA
CATAGCCGCCAATTACCGTGCGGGCATTTTTTTGTCCGCTTTATCCCACT
AAAACCGTCCCAGTCCTTTTTTCGCACCTATAGACAATTATAGAAAAAGG
TGTCAAAAAAGGATTGGATCGAGTTTGGGTTTATAATTACTGACCGCGCG
ACTACGGTCGAAAAGGTGTATTAAAAGAAAATGGATATAAAATTTTGAAT
ACAAGAAACTCGTTTCAACAACAAACATTACAAGTATAATAGTTAATTGA
AAACAGACTGTTTTTAATGTACAGACATATTATGGTAAGATGCTTGACCG
ACAAGAAACAGCTATGGAAATCTGGATGGCACCACGTGATTGAAAATATT
ATATTCATGACGTAATGTTTTCTACGGAAATACCCGGTTTTAGCCAGTAG
TGGCAAATTTAAACTAGAAAAAAGTTGTATAAGATTTGCCACTGCTGGCA
AAAACCGGGGTTTTTCCGTAGAAAATATTACGTCATGAATATTACAAATT
ATTTCTCCATTGCAGCTTTCGTTAACTTACTTGAGTCTCCTTTTAAATAG
ATTTATCAAGAATTAAATTTTGTGGATGGCAGTAGAAAAATAACTTTGGC
AGGGACTTATTTTGGTGGCTTCCAGGTAAAATTGGTCGTTAACCGGTAAT
AAGACAGTTTTGTTACTTTTTTCTAAAGAACGCGTCATTTTTATTACTTC
AAATGACCACTTATTAAAGTATAAAAACTCCATCTCATCTGCAAAATTTC
TGATCGGTATTTTAAAGCTGCTCGTTTATGCTGGTCATTCGACGAGGTAG
CAGATACCCTTCAGAAGATCATTTTTAGACCTAAAATGTAATACACGTTT
TTTTTTTATAAGAACGTCAAAAATTTTCGAAGCCTTCGGATGTTCTTAGT
TTTTTGGATTTGAAGCCTAAAAATGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029804XLOC_029804Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046716-exon-scaffold_116-1575043694:629577..629609TCONS_00046716-exon-scaffold_116-1575043694:629577..629609Clytia hemisphaericaexon
TCONS_00046716-exon-scaffold_116-1575043694:628843..628977TCONS_00046716-exon-scaffold_116-1575043694:628843..628977Clytia hemisphaericaexon
TCONS_00046716-exon-scaffold_116-1575043694:627948..628077TCONS_00046716-exon-scaffold_116-1575043694:627948..628077Clytia hemisphaericaexon
TCONS_00046716-exon-scaffold_116-1575043694:627301..627390TCONS_00046716-exon-scaffold_116-1575043694:627301..627390Clytia hemisphaericaexon
TCONS_00046716-exon-scaffold_116-1575043694:625484..626717TCONS_00046716-exon-scaffold_116-1575043694:625484..626717Clytia hemisphaericaexon
TCONS_00046716-exon-scaffold_116-1510915933:629577..629609TCONS_00046716-exon-scaffold_116-1510915933:629577..629609Clytia hemisphaericaexon
TCONS_00046716-exon-scaffold_116-1510915933:628843..628977TCONS_00046716-exon-scaffold_116-1510915933:628843..628977Clytia hemisphaericaexon
TCONS_00046716-exon-scaffold_116-1510915933:627948..628077TCONS_00046716-exon-scaffold_116-1510915933:627948..628077Clytia hemisphaericaexon
TCONS_00046716-exon-scaffold_116-1510915933:627301..627390TCONS_00046716-exon-scaffold_116-1510915933:627301..627390Clytia hemisphaericaexon
TCONS_00046716-exon-scaffold_116-1510915933:625484..626717TCONS_00046716-exon-scaffold_116-1510915933:625484..626717Clytia hemisphaericaexon
TCONS_00046716-exon-scaffold_116-1491911889:629577..629609TCONS_00046716-exon-scaffold_116-1491911889:629577..629609Clytia hemisphaericaexon
TCONS_00046716-exon-scaffold_116-1491911889:628843..628977TCONS_00046716-exon-scaffold_116-1491911889:628843..628977Clytia hemisphaericaexon
TCONS_00046716-exon-scaffold_116-1491911889:627948..628077TCONS_00046716-exon-scaffold_116-1491911889:627948..628077Clytia hemisphaericaexon
TCONS_00046716-exon-scaffold_116-1491911889:627301..627390TCONS_00046716-exon-scaffold_116-1491911889:627301..627390Clytia hemisphaericaexon
TCONS_00046716-exon-scaffold_116-1491911889:625484..626717TCONS_00046716-exon-scaffold_116-1491911889:625484..626717Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_116supercontigscaffold_116:625484..629609 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.16725	0.757009	0.347185	1.23631	0.912896	0.401399	4.10339	4.69914	2.41584	1.7899	2.51888	1.96246	1.95868	0.940894	1.23623	0.601283	1.73479	1.37177	1.93179	1.40464	2.54339	2.16501	1.15145	1.33904	1.45785	1.99751	0.98844	3.00581	0.428274	0.903847
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046716 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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