TCONS_00046719 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046719
Unique NameTCONS_00046719
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1854

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046719 ID=TCONS_00046719|Name=TCONS_00046719|organism=Clytia hemisphaerica|type=transcript|length=1854bp
gataaaaataaatgaagaatcaaagaaaacatacgaGAATATCAAGGTGC
AAGTCAGGAAATGCCAACTTCAACTGGGAAACGATATTTCAATGAAGTAT
CCAATTCGACTAACAGAGACGTGAAAACTtcgaaaattctgaaattggaT
GAAACGAAATTGGTAGTAAGTGTTCCCAATGAAAATGAGAAGAGCTCTGA
TAAATCCACTTCAACTTGTATTGTCAACGAAGGTGTTGAAGAaacaaaca
tttcaaaattagaTATTTCGGACTCATGTCAAAATGGCCCCAAAAAGTCT
CGGAAATTTACCAACGTTTTGCGATCGGAAAGACCTTTAAAGTCAATGGG
CATGTATACCAAATACGAACTTCATGGAATTGTACCAGAAAATGTGGTCG
ACGCTCTTAAAAAGGAAAAGAATCAGAAATATCGCCAGTTGAAGAGAGAA
ACAAAGAATTCAAAAGATCCCTCCAATACAGATACAAATTTACTATCAAT
GCAACAAGTTTTTCAACGAAATGGTGGAAAATTACTGTCGGAAAAATGGT
ATCGATCCTTTTAAGACTTCTCGAAAATGGAAGAGAAAAGATGTTTCTTG
AAAATCGGGAGAAAAACcgaattgaaaaacaaaagctAGATCTGCTTAAA
TATTCAAGAAGTCATGAACCTAttgatttgatgaaaatttataGCAGAGC
TGAATTGAAATGCGTTTGTCCGAAAAAGTTCATCGCAGATTGTGAAAATA
AACGAATGGATTGGTACCGTCAAAAGATGGAAGAATTGGTTGAGAAAACG
CCAATTACTAAAAGGAGAGTTTCATGCGAATCATCCAAATATTTCAACGA
ACTGATAGAAGAATATTACACCAAGCATGTCATCAACTTGAAATCATTCa
acgaaaataaaaagaacaaaaagaaaaagaacaaaaggaaaaagaacaaa
aggaaaaagaagaacagCACACCAGTTCAAAATCACCAAATTATTAATGA
TAACCAAAAGCAATTAAGCTCTGAATGTTTAAGGAATTCTGGGAACGATT
TTCCATTCGATGTTCAATCTGGCGGCTGCACAAGCATTGAACGTGGAATT
ATGGTACAGCCATTAATACAAGACACTGATACGATCATAACTTCAAATGT
AAATTGCGACGAAATTAACACGCCTTTACGCTACCACCAACCTCTCATGC
ATCGAATTGACACAACATCTTATCATCATCACGAGTTCTTGTCTGAAATT
CAACCTGTAGGCTATACAGAAAGCTTTACAAGCTTTACAAGCGGAGGAAA
ATCTCTACGAATAATGCCAATGCCAACTGTAAGATGCGACGAAACTGAAA
CAACTTCATTATCATATCAGAAGACCATGGGTTTAACCAAAGACGAGACC
GAAGCGAATTCTTTATCCTGCCAACAGTCCACGGATTTAATCAACACAAC
ACAGACTATCGATGTTGACCCGAAGGAGCTTTTACGAAGCCAAAGACCTC
TTGAAACAATGGGGTATTATCAATTGAAAGAACTATGTGGTATTGTACCT
GACAGTGCAATTGTTGCTTTTCAAGGAGAACAACGTGATTTTCTAGATAA
AAACTTGGAGAGAGAATTAAAGAACGCCCCATCTGAAGTCGAGAAACTTA
ACGTAAAACGCTTGTTGAGTTTATAAGTTTATCTCATTACTTTTAACGGA
AACTGGAAACGGTTTTCGAATTTCCTGCTAATAATTAAGCCATACTTTTG
AACATGTTTAAACTTGATTGTTATGAAGGTTGCCtgctatttttcagaaa
ctcaAAATCACATAGGGTTCAAATTTATGTGGCTTTGGTTTATTGATTGT
CTTC
Run BLAST on NCBI

protein sequence of TCONS_00046719-protein

>TCONS_00046719-protein ID=TCONS_00046719-protein|Name=TCONS_00046719-protein|organism=Clytia hemisphaerica|type=polypeptide|length=376bp
MVSILLRLLENGREKMFLENREKNRIEKQKLDLLKYSRSHEPIDLMKIYS
RAELKCVCPKKFIADCENKRMDWYRQKMEELVEKTPITKRRVSCESSKYF
NELIEEYYTKHVINLKSFNENKKNKKKKNKRKKNKRKKKNSTPVQNHQII
NDNQKQLSSECLRNSGNDFPFDVQSGGCTSIERGIMVQPLIQDTDTIITS
NVNCDEINTPLRYHQPLMHRIDTTSYHHHEFLSEIQPVGYTESFTSFTSG
GKSLRIMPMPTVRCDETETTSLSYQKTMGLTKDETEANSLSCQQSTDLIN
TTQTIDVDPKELLRSQRPLETMGYYQLKELCGIVPDSAIVAFQGEQRDFL
DKNLERELKNAPSEVEKLNVKRLLSL
Run BLAST on NCBI

transcript from alignment at scaffold_116:850370..853306-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046719 ID=TCONS_00046719|Name=TCONS_00046719|organism=Clytia hemisphaerica|type=transcript|length=2937bp|location=Sequence derived from alignment at scaffold_116:850370..853306- (Clytia hemisphaerica)
GATAAAAATAAATGAAGAATCAAAGAAAACATACGAGAATATCAAGGTGC
AAGTCAGGAAATGCCAACTTCAACTGGGAAACGATATTTCAATGAAGTAT
CCAATTCGACTAACAGAGACGTGAAAACTTCGAAAATTCTGAAATTGGAT
GAAACGAAATTGGTAGTAAGTGTTCCCAATGAAAATGAGAAGAGCTCTGA
TAAATCCACTTCAACTTGTATTGTCAACGAAGGTGTTGAAGAAACAAACA
TTTCAAAATTAGATATTTCGGACTCATGTCAAAATGGCCCCAAAAAGTCT
CGGAAATTTACCAACGTTTTGCGATCGGAAAGACCTTTAAAGTCAATGGG
CATGTATACCAAATACGAACTTCATGGAATTGTACCAGAAAATGTGGTCG
ACGCTCTTAAAAAGGAAAAGAATCAGAAATATCGCCAGTTGAAGAGAGAA
ACAAAGAATTCAAAAGATCCCTCCAATACAGATACAAATTTAGTAAGATA
CACATTCTTTCTCTCCAATAGTTTTTCTTATAGCCTTTTCCTTGCCGCAT
ATTTTTTTCCGGCTGCCGTGAGTTCGAATGAGGACTTAATTTAAAAACTT
AACTTAACCTTTTTTGGTGTTGCTAAGCCAACAGAAGCCAGTCTGAGATT
TGATTTGATTCGATTTGAAGTTGGCATTTTTGAAAACGAAAAAAAAATCG
TTACATTATATATATATAGATTTAAGCAACCTACTATGAAGATATATTAG
ACAGCCTGATTAACCCAAGTGAAATATTGCTAGTGAAAATGTCGCTCTAT
TTAGGGGGCCTGGGACCTTCGTGCTATCACATATGTTAAAAAGGTCGGGA
GTAAAGTATGGTATTTTACAGCCAAAGAAAATCCTTTCATTTTAGCGCCT
TAGAAACCTTTTTTAGCCAAAATAGGGGTCAATCAAAGGAGCTAGGTGTT
ATTAAGTTATGCAGAAAACCCGGGGGGGGGGGTCTTGATTCAAAAACGAC
CGTTCGTGCGGACCAAAATAAGCCCTTTGAAAAATCGGACCCTTACAGTT
CAGAAAAAATTTAGTACATTCTGAGCAAATTTGGTCGAAAAATCGATCCT
TATACGGTGTATTATAGTTTTTGACCATTTTCAGGTGAAATATGGTCAGA
TTTTCTAAATTTTGCACCCTTAGAGTGCACTTTTTCTCATTTTTGCTCAT
TTCGACCTTACAGTGCACTTTGGGAAGCTTGGAAAAAAGACCCTTAAGGG
CCGCACGTACAGTAGGTCATCTTGAGTGTCCCCGCCACCCCGGCAGAGAA
TGCACCCAGCCGAAAGTATAAATTTTTCCATGATCTTCCTCTCTTAGGAA
TCAAGCTATCAATGCAACAAGTTTTTCAACGAAATGGTGGAAAATTACTG
TCGGAAAAATGGTATCGATCCTTTTAAGACTTCTCGAAAATGGAAGAGAA
AAGATGTTTCTTGAAAATCGGGAGAAAAACCGAATTGAAAAACAAAAGCT
AGATCTGCTTAAATATTCAAGAAGTCATGAACCTATTGATTTGATGAAAA
TTTATAGCAGAGCTGAATTGAAATGCGTTTGTCCGAAAAAGTTCATCGCA
GATTGTGAAAATAAACGAATGGATTGGTACCGTCAAAAGATGGAAGAATT
GGTTGAGAAAACGCCAATTACTAAAAGGGTCAGAAACCTTTTTTCCTAAT
TTAAAGCTTCTATTTAGCTGTTTGGGAAAATATTGCAATACTTTTGACTT
TTTTTGGAGTTTTTGATTTTCTTGTTTTATCTACGTTGTTTTTAGATTCA
TAAAACATGAGGTTGATTTAGAAAAATTAGGCTTTGGATATTTTCATGTT
TAGATTTTCCTGTTTTTTTTTATTGAGCACCATACCTTTAACTTTTAGAG
AGTTTCATGCGAATCATCCAAATATTTCAACGAACTGATAGAAGAATATT
ACACCAAGCATGTCATCAACTTGAAATCATTCAACGAAAATAAAAAGAAC
AAAAAGAAAAAGAACAAAAGGAAAAAGAACAAAAGGAAAAAGAAGAACAG
CACACCAGTTCAAAATCACCAAATTATTAATGATAACCAAAAGCAATTAA
GCTCTGAATGTTTAAGGAATTCTGGGAACGATTTTCCATTCGATGTTCAA
TCTGGCGGCTGCACAAGCATTGAACGTGGAATTATGGTACAGCCATTAAT
ACAAGACACTGATACGATCATAACTTCAAATGTAAATTGCGACGAAATTA
ACACGCCTTTACGCTACCACCAACCTCTCATGCATCGAATTGACACAACA
TCTTATCATCATCACGAGTTCTTGTCTGAAATTCAACCTGTAGGCTATAC
AGAAAGCTTTACAAGCTTTACAAGCGGAGGAAAATCTCTACGAATAATGC
CAATGCCAACTGTAAGATGCGACGAAACTGAAACAACTTCATTATCATAT
CAGAAGACCATGGGTTTAACCAAAGACGAGACCGAAGCGAATTCTTTATC
CTGCCAACAGTCCACGGATTTAATCAACACAACACAGACTATCGATGTTG
ACCCGAAGGAGCTTTTACGAAGCCAAAGACCTCTTGAAACAATGGGGTAT
TATCAATTGAAAGAACTATGTGGTATTGTACCTGACAGTGCAATTGTTGC
TTTTCAAGGAGAACAACGTGATTTTCTAGATAAAAACTTGGAGAGAGAAT
TAAAGAACGCCCCATCTGAAGTCGAGAAACTTAACGTAAAACGCTTGTTG
AGTTTATAAGTTTATCTCATTACTTTTAACGGAAACTGGAAACGGTTTTC
GAATTTCCTGCTAATAATTAAGCCATACTTTTGAACATGTTTAAACTTGA
TTGTTATGAAGGTTGCCTGCTATTTTTCAGAAACTCAAAATCACATAGGG
TTCAAATTTATGTGGCTTTGGTTTATTGATTGTCTTC

Coding sequence (CDS) from alignment at scaffold_116:850370..853306-

>TCONS_00046719 ID=TCONS_00046719|Name=TCONS_00046719|organism=Clytia hemisphaerica|type=CDS|length=2262bp|location=Sequence derived from alignment at scaffold_116:850370..853306- (Clytia hemisphaerica)
AGAGTTTCATGCGAATCATCCAAATATTTCAACGAACTGATAGAAGAATA
TTACACCAAGCATGTCATCAACTTGAAATCATTCAACGAAAATAAAAAGA
ACAAAAAGAAAAAGAACAAAAGGAAAAAGAACAAAAGGAAAAAGAAGAAC
AGCACACCAGTTCAAAATCACCAAATTATTAATGATAACCAAAAGCAATT
AAGCTCTGAATGTTTAAGGAATTCTGGGAACGATTTTCCATTCGATGTTC
AATCTGGCGGCTGCACAAGCATTGAACGTGGAATTATGGTACAGCCATTA
ATACAAGACACTGATACGATCATAACTTCAAATGTAAATTGCGACGAAAT
TAACACGCCTTTACGCTACCACCAACCTCTCATGCATCGAATTGACACAA
CATCTTATCATCATCACGAGTTCTTGTCTGAAATTCAACCTGTAGGCTAT
ACAGAAAGCTTTACAAGCTTTACAAGCGGAGGAAAATCTCTACGAATAAT
GCCAATGCCAACTGTAAGATGCGACGAAACTGAAACAACTTCATTATCAT
ATCAGAAGACCATGGGTTTAACCAAAGACGAGACCGAAGCGAATTCTTTA
TCCTGCCAACAGTCCACGGATTTAATCAACACAACACAGACTATCGATGT
TGACCCGAAGGAGCTTTTACGAAGCCAAAGACCTCTTGAAACAATGGGGT
ATTATCAATTGAAAGAACTATGTGGTATTGTACCTGACAGTGCAATTGTT
GCTTTTCAAGGAGAACAACGTGATTTTCTAGATAAAAACTTGGAGAGAGA
ATTAAAGAACGCCCCATCTGAAGTCGAGAAACTTAACGTAAAACGCTTGT
TGAGTTTATAAATGGTATCGATCCTTTTAAGACTTCTCGAAAATGGAAGA
GAAAAGATGTTTCTTGAAAATCGGGAGAAAAACCGAATTGAAAAACAAAA
GCTAGATCTGCTTAAATATTCAAGAAGTCATGAACCTATTGATTTGATGA
AAATTTATAGCAGAGCTGAATTGAAATGCGTTTGTCCGAAAAAGTTCATC
GCAGATTGTGAAAATAAACGAATGGATTGGTACCGTCAAAAGATGGAAGA
ATTGGTTGAGAAAACGCCAATTACTAAAAGGAGAGTTTCATGCGAATCAT
CCAAATATTTCAACGAACTGATAGAAGAATATTACACCAAGCATGTCATC
AACTTGAAATCATTCAACGAAAATAAAAAGAACAAAAAGAAAAAGAACAA
AAGGAAAAAGAACAAAAGGAAAAAGAAGAACAGCACACCAGTTCAAAATC
ACCAAATTATTAATGATAACCAAAAGCAATTAAGCTCTGAATGTTTAAGG
AATTCTGGGAACGATTTTCCATTCGATGTTCAATCTGGCGGCTGCACAAG
CATTGAACGTGGAATTATGGTACAGCCATTAATACAAGACACTGATACGA
TCATAACTTCAAATGTAAATTGCGACGAAATTAACACGCCTTTACGCTAC
CACCAACCTCTCATGCATCGAATTGACACAACATCTTATCATCATCACGA
GTTCTTGTCTGAAATTCAACCTGTAGGCTATACAGAAAGCTTTACAAGCT
TTACAAGCGGAGGAAAATCTCTACGAATAATGCCAATGCCAACTGTAAGA
TGCGACGAAACTGAAACAACTTCATTATCATATCAGAAGACCATGGGTTT
AACCAAAGACGAGACCGAAGCGAATTCTTTATCCTGCCAACAGTCCACGG
ATTTAATCAACACAACACAGACTATCGATGTTGACCCGAAGGAGCTTTTA
CGAAGCCAAAGACCTCTTGAAACAATGGGGTATTATCAATTGAAAGAACT
ATGTGGTATTGTACCTGACAGTGCAATTGTTGCTTTTCAAGGAGAACAAC
GTGATTTTCTAGATAAAAACTTGGAGAGAGAATTAAAGAACGCCCCATCT
GAAGTCGAGAAACTTAACGTAAAACGCTTGTTGAGTTTATAAATGGTATC
GATCCTTTTAAGACTTCTCGAAAATGGAAGAGAAAAGATGTTTCTTGAAA
ATCGGGAGAAAAACCGAATTGAAAAACAAAAGCTAGATCTGCTTAAATAT
TCAAGAAGTCATGAACCTATTGATTTGATGAAAATTTATAGCAGAGCTGA
ATTGAAATGCGTTTGTCCGAAAAAGTTCATCGCAGATTGTGAAAATAAAC
GAATGGATTGGTACCGTCAAAAGATGGAAGAATTGGTTGAGAAAACGCCA
ATTACTAAAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029806XLOC_029806Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046719-proteinTCONS_00046719-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046719-exon-scaffold_116-1575043694:852815..853306TCONS_00046719-exon-scaffold_116-1575043694:852815..853306Clytia hemisphaericaexon
TCONS_00046719-exon-scaffold_116-1575043694:851629..851951TCONS_00046719-exon-scaffold_116-1575043694:851629..851951Clytia hemisphaericaexon
TCONS_00046719-exon-scaffold_116-1575043694:850370..851408TCONS_00046719-exon-scaffold_116-1575043694:850370..851408Clytia hemisphaericaexon
TCONS_00046719-exon-scaffold_116-1510915933:852815..853306TCONS_00046719-exon-scaffold_116-1510915933:852815..853306Clytia hemisphaericaexon
TCONS_00046719-exon-scaffold_116-1510915933:851629..851951TCONS_00046719-exon-scaffold_116-1510915933:851629..851951Clytia hemisphaericaexon
TCONS_00046719-exon-scaffold_116-1510915933:850370..851408TCONS_00046719-exon-scaffold_116-1510915933:850370..851408Clytia hemisphaericaexon
TCONS_00046719-exon-scaffold_116-1491911889:852815..853306TCONS_00046719-exon-scaffold_116-1491911889:852815..853306Clytia hemisphaericaexon
TCONS_00046719-exon-scaffold_116-1491911889:851629..851951TCONS_00046719-exon-scaffold_116-1491911889:851629..851951Clytia hemisphaericaexon
TCONS_00046719-exon-scaffold_116-1491911889:850370..851408TCONS_00046719-exon-scaffold_116-1491911889:850370..851408Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_116supercontigscaffold_116:850370..853306 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.96251	5.42929	0.0229804	0.00580612	6.71244e-10	1.04563	0	1.40941	1.33589e-06	0	1.61697	1.75664	0.00574515	0	0.284974	4.34333e-10	7.38224e-05	1.20392	1.33308e-07	1.61472	2.75569	0.000450849	2.18874	7.20906	6.13115e-07	1.03663e-06	1.95934	1.21274	0.361599	4.85956
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046719 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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