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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046720 ID=TCONS_00046720|Name=TCONS_00046720|organism=Clytia hemisphaerica|type=transcript|length=1862bp
gataaaaataaatgaagaatcaaagaaaacatacgaGAATATCAAGGTGC
AAGTCAGGAAATGCCAACTTCAACTGGGAAACGATATTTCAATGAAGTAT
CCAATTCGACTAACAGAGACGTGAAAACTtcgaaaattctgaaattggaT
GAAACGAAATTGGTAGTAAGTGTTCCCAATGAAAATGAGAAGAGCTCTGA
TAAATCCACTTCAACTTGTATTGTCAACGAAGGTGTTGAAGAaacaaaca
tttcaaaattagaTATTTCGGACTCATGTCAAAATGGCCCCAAAAAGTCT
CGGAAATTTACCAACGTTTTGCGATCGGAAAGACCTTTAAAGTCAATGGG
CATGTATACCAAATACGAACTTCATGGAATTGTACCAGAAAATGTGGTCG
ACGCTCTTAAAAAGGAAAAGAATCAGAAATATCGCCAGTTGAAGAGAGAA
ACAAAGAATTCAAAAGATCCCTCCAATACAGATACAAATTTAGAATCAAG
CTATCAATGCAACAAGTTTTTCAACGAAATGGTGGAAAATTACTGTCGGA
AAAATGGTATCGATCCTTTTAAGACTTCTCGAAAATGGAAGAGAAAAGAT
GTTTCTTGAAAATCGGGAGAAAAACcgaattgaaaaacaaaagctAGATC
TGCTTAAATATTCAAGAAGTCATGAACCTAttgatttgatgaaaatttat
aGCAGAGCTGAATTGAAATGCGTTTGTCCGAAAAAGTTCATCGCAGATTG
TGAAAATAAACGAATGGATTGGTACCGTCAAAAGATGGAAGAATTGGTTG
AGAAAACGCCAATTACTAAAAGGAGAGTTTCATGCGAATCATCCAAATAT
TTCAACGAACTGATAGAAGAATATTACACCAAGCATGTCATCAACTTGAA
ATCATTCaacgaaaataaaaagaacaaaaagaaaaagaacaaaaggaaaa
agaacaaaaggaaaaagaagaacagCACACCAGTTCAAAATCACCAAATT
ATTAATGATAACCAAAAGCAATTAAGCTCTGAATGTTTAAGGAATTCTGG
GAACGATTTTCCATTCGATGTTCAATCTGGCGGCTGCACAAGCATTGAAC
GTGGAATTATGGTACAGCCATTAATACAAGACACTGATACGATCATAACT
TCAAATGTAAATTGCGACGAAATTAACACGCCTTTACGCTACCACCAACC
TCTCATGCATCGAATTGACACAACATCTTATCATCATCACGAGTTCTTGT
CTGAAATTCAACCTGTAGGCTATACAGAAAGCTTTACAAGCTTTACAAGC
GGAGGAAAATCTCTACGAATAATGCCAATGCCAACTGTAAGATGCGACGA
AACTGAAACAACTTCATTATCATATCAGAAGACCATGGGTTTAACCAAAG
ACGAGACCGAAGCGAATTCTTTATCCTGCCAACAGTCCACGGATTTAATC
AACACAACACAGACTATCGATGTTGACCCGAAGGAGCTTTTACGAAGCCA
AAGACCTCTTGAAACAATGGGGTATTATCAATTGAAAGAACTATGTGGTA
TTGTACCTGACAGTGCAATTGTTGCTTTTCAAGGAGAACAACGTGATTTT
CTAGATAAAAACTTGGAGAGAGAATTAAAGAACGCCCCATCTGAAGTCGA
GAAACTTAACGTAAAACGCTTGTTGAGTTTATAAGTTTATCTCATTACTT
TTAACGGAAACTGGAAACGGTTTTCGAATTTCCTGCTAATAATTAAGCCA
TACTTTTGAACATGTTTAAACTTGATTGTTATGAAGGTTGCCtgctattt
ttcagaaactcaAAATCACATAGGGTTCAAATTTATGTGGCTTTGGTTTA
TTGATTGTCTTC Run BLAST on NCBI transcript from alignment at scaffold_116:850370..853306- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046720 ID=TCONS_00046720|Name=TCONS_00046720|organism=Clytia hemisphaerica|type=transcript|length=2937bp|location=Sequence derived from alignment at scaffold_116:850370..853306- (Clytia hemisphaerica)
GATAAAAATAAATGAAGAATCAAAGAAAACATACGAGAATATCAAGGTGC
AAGTCAGGAAATGCCAACTTCAACTGGGAAACGATATTTCAATGAAGTAT
CCAATTCGACTAACAGAGACGTGAAAACTTCGAAAATTCTGAAATTGGAT
GAAACGAAATTGGTAGTAAGTGTTCCCAATGAAAATGAGAAGAGCTCTGA
TAAATCCACTTCAACTTGTATTGTCAACGAAGGTGTTGAAGAAACAAACA
TTTCAAAATTAGATATTTCGGACTCATGTCAAAATGGCCCCAAAAAGTCT
CGGAAATTTACCAACGTTTTGCGATCGGAAAGACCTTTAAAGTCAATGGG
CATGTATACCAAATACGAACTTCATGGAATTGTACCAGAAAATGTGGTCG
ACGCTCTTAAAAAGGAAAAGAATCAGAAATATCGCCAGTTGAAGAGAGAA
ACAAAGAATTCAAAAGATCCCTCCAATACAGATACAAATTTAGTAAGATA
CACATTCTTTCTCTCCAATAGTTTTTCTTATAGCCTTTTCCTTGCCGCAT
ATTTTTTTCCGGCTGCCGTGAGTTCGAATGAGGACTTAATTTAAAAACTT
AACTTAACCTTTTTTGGTGTTGCTAAGCCAACAGAAGCCAGTCTGAGATT
TGATTTGATTCGATTTGAAGTTGGCATTTTTGAAAACGAAAAAAAAATCG
TTACATTATATATATATAGATTTAAGCAACCTACTATGAAGATATATTAG
ACAGCCTGATTAACCCAAGTGAAATATTGCTAGTGAAAATGTCGCTCTAT
TTAGGGGGCCTGGGACCTTCGTGCTATCACATATGTTAAAAAGGTCGGGA
GTAAAGTATGGTATTTTACAGCCAAAGAAAATCCTTTCATTTTAGCGCCT
TAGAAACCTTTTTTAGCCAAAATAGGGGTCAATCAAAGGAGCTAGGTGTT
ATTAAGTTATGCAGAAAACCCGGGGGGGGGGGTCTTGATTCAAAAACGAC
CGTTCGTGCGGACCAAAATAAGCCCTTTGAAAAATCGGACCCTTACAGTT
CAGAAAAAATTTAGTACATTCTGAGCAAATTTGGTCGAAAAATCGATCCT
TATACGGTGTATTATAGTTTTTGACCATTTTCAGGTGAAATATGGTCAGA
TTTTCTAAATTTTGCACCCTTAGAGTGCACTTTTTCTCATTTTTGCTCAT
TTCGACCTTACAGTGCACTTTGGGAAGCTTGGAAAAAAGACCCTTAAGGG
CCGCACGTACAGTAGGTCATCTTGAGTGTCCCCGCCACCCCGGCAGAGAA
TGCACCCAGCCGAAAGTATAAATTTTTCCATGATCTTCCTCTCTTAGGAA
TCAAGCTATCAATGCAACAAGTTTTTCAACGAAATGGTGGAAAATTACTG
TCGGAAAAATGGTATCGATCCTTTTAAGACTTCTCGAAAATGGAAGAGAA
AAGATGTTTCTTGAAAATCGGGAGAAAAACCGAATTGAAAAACAAAAGCT
AGATCTGCTTAAATATTCAAGAAGTCATGAACCTATTGATTTGATGAAAA
TTTATAGCAGAGCTGAATTGAAATGCGTTTGTCCGAAAAAGTTCATCGCA
GATTGTGAAAATAAACGAATGGATTGGTACCGTCAAAAGATGGAAGAATT
GGTTGAGAAAACGCCAATTACTAAAAGGGTCAGAAACCTTTTTTCCTAAT
TTAAAGCTTCTATTTAGCTGTTTGGGAAAATATTGCAATACTTTTGACTT
TTTTTGGAGTTTTTGATTTTCTTGTTTTATCTACGTTGTTTTTAGATTCA
TAAAACATGAGGTTGATTTAGAAAAATTAGGCTTTGGATATTTTCATGTT
TAGATTTTCCTGTTTTTTTTTATTGAGCACCATACCTTTAACTTTTAGAG
AGTTTCATGCGAATCATCCAAATATTTCAACGAACTGATAGAAGAATATT
ACACCAAGCATGTCATCAACTTGAAATCATTCAACGAAAATAAAAAGAAC
AAAAAGAAAAAGAACAAAAGGAAAAAGAACAAAAGGAAAAAGAAGAACAG
CACACCAGTTCAAAATCACCAAATTATTAATGATAACCAAAAGCAATTAA
GCTCTGAATGTTTAAGGAATTCTGGGAACGATTTTCCATTCGATGTTCAA
TCTGGCGGCTGCACAAGCATTGAACGTGGAATTATGGTACAGCCATTAAT
ACAAGACACTGATACGATCATAACTTCAAATGTAAATTGCGACGAAATTA
ACACGCCTTTACGCTACCACCAACCTCTCATGCATCGAATTGACACAACA
TCTTATCATCATCACGAGTTCTTGTCTGAAATTCAACCTGTAGGCTATAC
AGAAAGCTTTACAAGCTTTACAAGCGGAGGAAAATCTCTACGAATAATGC
CAATGCCAACTGTAAGATGCGACGAAACTGAAACAACTTCATTATCATAT
CAGAAGACCATGGGTTTAACCAAAGACGAGACCGAAGCGAATTCTTTATC
CTGCCAACAGTCCACGGATTTAATCAACACAACACAGACTATCGATGTTG
ACCCGAAGGAGCTTTTACGAAGCCAAAGACCTCTTGAAACAATGGGGTAT
TATCAATTGAAAGAACTATGTGGTATTGTACCTGACAGTGCAATTGTTGC
TTTTCAAGGAGAACAACGTGATTTTCTAGATAAAAACTTGGAGAGAGAAT
TAAAGAACGCCCCATCTGAAGTCGAGAAACTTAACGTAAAACGCTTGTTG
AGTTTATAAGTTTATCTCATTACTTTTAACGGAAACTGGAAACGGTTTTC
GAATTTCCTGCTAATAATTAAGCCATACTTTTGAACATGTTTAAACTTGA
TTGTTATGAAGGTTGCCTGCTATTTTTCAGAAACTCAAAATCACATAGGG
TTCAAATTTATGTGGCTTTGGTTTATTGATTGTCTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046720-exon-scaffold_116-1575043694:852815..853306 | TCONS_00046720-exon-scaffold_116-1575043694:852815..853306 | Clytia hemisphaerica | exon |
| TCONS_00046720-exon-scaffold_116-1575043694:851629..851959 | TCONS_00046720-exon-scaffold_116-1575043694:851629..851959 | Clytia hemisphaerica | exon |
| TCONS_00046720-exon-scaffold_116-1575043694:850370..851408 | TCONS_00046720-exon-scaffold_116-1575043694:850370..851408 | Clytia hemisphaerica | exon |
| TCONS_00046720-exon-scaffold_116-1510915933:852815..853306 | TCONS_00046720-exon-scaffold_116-1510915933:852815..853306 | Clytia hemisphaerica | exon |
| TCONS_00046720-exon-scaffold_116-1510915933:851629..851959 | TCONS_00046720-exon-scaffold_116-1510915933:851629..851959 | Clytia hemisphaerica | exon |
| TCONS_00046720-exon-scaffold_116-1510915933:850370..851408 | TCONS_00046720-exon-scaffold_116-1510915933:850370..851408 | Clytia hemisphaerica | exon |
| TCONS_00046720-exon-scaffold_116-1491911889:852815..853306 | TCONS_00046720-exon-scaffold_116-1491911889:852815..853306 | Clytia hemisphaerica | exon |
| TCONS_00046720-exon-scaffold_116-1491911889:851629..851959 | TCONS_00046720-exon-scaffold_116-1491911889:851629..851959 | Clytia hemisphaerica | exon |
| TCONS_00046720-exon-scaffold_116-1491911889:850370..851408 | TCONS_00046720-exon-scaffold_116-1491911889:850370..851408 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_116 | supercontig | scaffold_116:850370..853306 - |
Blast
The following BLAST results are available for this feature:
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