TCONS_00046723 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046723
Unique NameTCONS_00046723
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length212

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046723 ID=TCONS_00046723|Name=TCONS_00046723|organism=Clytia hemisphaerica|type=transcript|length=212bp
ggcagtttgtttacatttcaaatgaaaaaaatccttCAACTATTGTCACC
GAGATATTGGCATAAGGTCATCGACTTGATAAACTACGCCTTGAACAAAC
ACGAATGAGTACACGAATGAGAACACCTTGAATATCTTGAGATGGTGTCA
CAAAGCTCTCAGATTGTGCTCACGTGTTCACTTGACGATATATATATTCA
AGTAAAATCAAT
Run BLAST on NCBI

transcript from alignment at scaffold_116:7667..7878

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046723 ID=TCONS_00046723|Name=TCONS_00046723|organism=Clytia hemisphaerica|type=transcript|length=212bp|location=Sequence derived from alignment at scaffold_116:7667..7878 (Clytia hemisphaerica)
ATTGATTTTACTTGAATATATATATCGTCAAGTGAACACGTGAGCACAAT
CTGAGAGCTTTGTGACACCATCTCAAGATATTCAAGGTGTTCTCATTCGT
GTACTCATTCGTGTTTGTTCAAGGCGTAGTTTATCAAGTCGATGACCTTA
TGCCAATATCTCGGTGACAATAGTTGaaggatttttttcatttgaaatgt
aaacaaactgcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029809XLOC_029809Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046723-exon-scaffold_116-1491911889:7667..7878TCONS_00046723-exon-scaffold_116-1491911889:7667..7878Clytia hemisphaericaexon
TCONS_00046723-exon-scaffold_116-1510915933:7667..7878TCONS_00046723-exon-scaffold_116-1510915933:7667..7878Clytia hemisphaericaexon
TCONS_00046723-exon-scaffold_116-1575043694:7667..7878TCONS_00046723-exon-scaffold_116-1575043694:7667..7878Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_116supercontigscaffold_116:7667..7878 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	1.54913	3.77183	0	1.79795	3.36644	3.53539	11.6777	14.1684	11.1765	18.6016	14.4884	4.76458	7.66969	2.09965	3.22811	5.94641	10.8894	2.70424	0	0	0	1.50147	1.34003	1.91758	2.04649	1.55219	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046723 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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