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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046726 ID=TCONS_00046726|Name=TCONS_00046726|organism=Clytia hemisphaerica|type=transcript|length=1412bp
CATCAGCATGATGCAAGAAATGGCAGCTCTAGCTAAAAAACATGATATCG
AGGAACACCTTTATTATGGAGACACCCTCACTCACATTCAAAATCTTCTT
GGTGATGGCAGAACGACGCGATTCCTTTCAGAAATCTATGAAGATGACTT
CACACCCAGAGAAACTTGGACGAAAATGGTAACATTCCTTACGAAAGAAC
GTCGAATAGCTGAACAAAAACTTATCCTTCGAGACGACTCATCAAAATCA
AACGACAACAACAAACCAAAGGATTCATCAAAGAACACCAAGGATACGAG
GTACGGACATCATAATTCTTATGTCTCTGATACCTCAAATCCTCTATGTG
CTTTGTGTGAAACACCTGCTGGAGTAGATCATCATGTTACCACATCAGGC
CCAGGCCAGACGAGATTAATTCAATATTACACTTGTCAACTGTTTGCAGA
AATGACACCTGCAAGTCGCCTCTCCCTTTTGAAATCAAAGGGGTACTGCT
TTCAATGTTTGTTTCCAGGTGCAGCCAGTGCATCTGGAAAACACAAGGAT
GGTAAATGCCAACACGACTTCGTTTGTCCCGACGAATCACATCAAAAGTA
TTCAGTCCGAAAACACGTCTTGGTTTGTGAGGAGCACAAGGAGGAGCCTG
CCAATGTCGAGttgctcgagaaattcaaggaAAGGTTCTTCAGAAATCCA
GATCTTCCAAGCTTTACGAAAAACATCAGTTTATCATTTCACACTGAATC
TTTCCAAACCGTTGACGAAGATGGAGACAGAGGTATCTACATGCTCCAAG
AAATttaaatcaatcaaaacaagctCCTCATTTTCTTTGATAATGATTGT
AGTGACTTTGTTGTCAGCCAAAAAGCAATCAAGCTACTTGGATCAAATGC
AATCAAAGCGTCGTCAAAACCAGTCATTCTTGGTGGTGTTGGAAACAGTA
TTACAAAATCAACACTTGGTCGTTATATCGTCAAACTTCCACTGAGCAAT
GGAGAAATGGTTTCATTTACCGGACCCTGCATCCCAAAAATCACATCAAC
ATTTCCAACTTTTTCACTCATCGAAGCTCACAAAGACATCGACGAATCGT
ATTCAAAGGCTGGTGGACTCAAACCATTACCGAAACTTCCGCGCTCAATT
GGTGGTGACGTTCATATGATGATTGGCGTCAAACATCTGAAGTACTTCCC
AAAACACGTTTATCAAATGCCATCAGGACTGACAATACTCGAATCACTAT
TTACTAGTTCAAGTGGTGGAAGAGGAGTAATCGCTGGTCCACACCCTTCC
TTCCGTTGTTTCAATGTATCTTCAAACTTCACATCAGTTTATCATAATAC
GATCCATCCAATCAAAACTCCTTTACTCGGGTTCAATGCAGACCACCCAA
CATCTTTGAAAT Run BLAST on NCBI protein sequence of TCONS_00046726-protein >TCONS_00046726-protein ID=TCONS_00046726-protein|Name=TCONS_00046726-protein|organism=Clytia hemisphaerica|type=polypeptide|length=268bp
ISMMQEMAALAKKHDIEEHLYYGDTLTHIQNLLGDGRTTRFLSEIYEDDF
TPRETWTKMVTFLTKERRIAEQKLILRDDSSKSNDNNKPKDSSKNTKDTR
YGHHNSYVSDTSNPLCALCETPAGVDHHVTTSGPGQTRLIQYYTCQLFAE
MTPASRLSLLKSKGYCFQCLFPGAASASGKHKDGKCQHDFVCPDESHQKY
SVRKHVLVCEEHKEEPANVELLEKFKERFFRNPDLPSFTKNISLSFHTES
FQTVDEDGDRGIYMLQEI Run BLAST on NCBI transcript from alignment at scaffold_116:135205..136616 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046726 ID=TCONS_00046726|Name=TCONS_00046726|organism=Clytia hemisphaerica|type=transcript|length=1412bp|location=Sequence derived from alignment at scaffold_116:135205..136616 (Clytia hemisphaerica)
ATTTCAAAGATGTTGGGTGGTCTGCATTGAACCCGAGTAAAGGAGTTTTG
ATTGGATGGATCGTATTATGATAAACTGATGTGAAGTTTGAAGATACATT
GAAACAACGGAAGGAAGGGTGTGGACCAGCGATTACTCCTCTTCCACCAC
TTGAACTAGTAAATAGTGATTCGAGTATTGTCAGTCCTGATGGCATTTGA
TAAACGTGTTTTGGGAAGTACTTCAGATGTTTGACGCCAATCATCATATG
AACGTCACCACCAATTGAGCGCGGAAGTTTCGGTAATGGTTTGAGTCCAC
CAGCCTTTGAATACGATTCGTCGATGTCTTTGTGAGCTTCGATGAGTGAA
AAAGTTGGAAATGTTGATGTGATTTTTGGGATGCAGGGTCCGGTAAATGA
AACCATTTCTCCATTGCTCAGTGGAAGTTTGACGATATAACGACCAAGTG
TTGATTTTGTAATACTGTTTCCAACACCACCAAGAATGACTGGTTTTGAC
GACGCTTTGATTGCATTTGATCCAAGTAGCTTGATTGCTTTTTGGCTGAC
AACAAAGTCACTACAATCATTATCAAAGAAAATGAGGagcttgttttgat
tgatttaaATTTCTTGGAGCATGTAGATACCTCTGTCTCCATCTTCGTCA
ACGGTTTGGAAAGATTCAGTGTGAAATGATAAACTGATGTTTTTCGTAAA
GCTTGGAAGATCTGGATTTCTGAAGAACCTTtccttgaatttctcgagca
aCTCGACATTGGCAGGCTCCTCCTTGTGCTCCTCACAAACCAAGACGTGT
TTTCGGACTGAATACTTTTGATGTGATTCGTCGGGACAAACGAAGTCGTG
TTGGCATTTACCATCCTTGTGTTTTCCAGATGCACTGGCTGCACCTGGAA
ACAAACATTGAAAGCAGTACCCCTTTGATTTCAAAAGGGAGAGGCGACTT
GCAGGTGTCATTTCTGCAAACAGTTGACAAGTGTAATATTGAATTAATCT
CGTCTGGCCTGGGCCTGATGTGGTAACATGATGATCTACTCCAGCAGGTG
TTTCACACAAAGCACATAGAGGATTTGAGGTATCAGAGACATAAGAATTA
TGATGTCCGTACCTCGTATCCTTGGTGTTCTTTGATGAATCCTTTGGTTT
GTTGTTGTCGTTTGATTTTGATGAGTCGTCTCGAAGGATAAGTTTTTGTT
CAGCTATTCGACGTTCTTTCGTAAGGAATGTTACCATTTTCGTCCAAGTT
TCTCTGGGTGTGAAGTCATCTTCATAGATTTCTGAAAGGAATCGCGTCGT
TCTGCCATCACCAAGAAGATTTTGAATGTGAGTGAGGGTGTCTCCATAAT
AAAGGTGTTCCTCGATATCATGTTTTTTAGCTAGAGCTGCCATTTCTTGC
ATCATGCTGATG Coding sequence (CDS) from alignment at scaffold_116:135205..136616 >TCONS_00046726 ID=TCONS_00046726|Name=TCONS_00046726|organism=Clytia hemisphaerica|type=CDS|length=807bp|location=Sequence derived from alignment at scaffold_116:135205..136616 (Clytia hemisphaerica)
ttaaATTTCTTGGAGCATGTAGATACCTCTGTCTCCATCTTCGTCAACGG
TTTGGAAAGATTCAGTGTGAAATGATAAACTGATGTTTTTCGTAAAGCTT
GGAAGATCTGGATTTCTGAAGAACCTTtccttgaatttctcgagcaaCTC
GACATTGGCAGGCTCCTCCTTGTGCTCCTCACAAACCAAGACGTGTTTTC
GGACTGAATACTTTTGATGTGATTCGTCGGGACAAACGAAGTCGTGTTGG
CATTTACCATCCTTGTGTTTTCCAGATGCACTGGCTGCACCTGGAAACAA
ACATTGAAAGCAGTACCCCTTTGATTTCAAAAGGGAGAGGCGACTTGCAG
GTGTCATTTCTGCAAACAGTTGACAAGTGTAATATTGAATTAATCTCGTC
TGGCCTGGGCCTGATGTGGTAACATGATGATCTACTCCAGCAGGTGTTTC
ACACAAAGCACATAGAGGATTTGAGGTATCAGAGACATAAGAATTATGAT
GTCCGTACCTCGTATCCTTGGTGTTCTTTGATGAATCCTTTGGTTTGTTG
TTGTCGTTTGATTTTGATGAGTCGTCTCGAAGGATAAGTTTTTGTTCAGC
TATTCGACGTTCTTTCGTAAGGAATGTTACCATTTTCGTCCAAGTTTCTC
TGGGTGTGAAGTCATCTTCATAGATTTCTGAAAGGAATCGCGTCGTTCTG
CCATCACCAAGAAGATTTTGAATGTGAGTGAGGGTGTCTCCATAATAAAG
GTGTTCCTCGATATCATGTTTTTTAGCTAGAGCTGCCATTTCTTGCATCA
TGCTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046726-exon-scaffold_116-1491911889:135205..136616 | TCONS_00046726-exon-scaffold_116-1491911889:135205..136616 | Clytia hemisphaerica | exon |
| TCONS_00046726-exon-scaffold_116-1510915933:135205..136616 | TCONS_00046726-exon-scaffold_116-1510915933:135205..136616 | Clytia hemisphaerica | exon |
| TCONS_00046726-exon-scaffold_116-1575043694:135205..136616 | TCONS_00046726-exon-scaffold_116-1575043694:135205..136616 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_116 | supercontig | scaffold_116:135205..136616 . |
Blast
The following BLAST results are available for this feature:
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