|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046727 ID=TCONS_00046727|Name=TCONS_00046727|organism=Clytia hemisphaerica|type=transcript|length=1635bp
attacataaagatttaaataaaattgcTTGCTTATCACACTTACTGTACT
GTttcaacaaacttggaaaaaaaagaaaatttcgaaatccccactgaaat
ttttattctaattcTGTGTCCCCACTGGTATTTTCTGTCTTTGAAAAGTC
CCCACtggatttccaaagaaaattttttatccccggtgtaattttaaaag
ccaccgggtcactgagacaggggtgtttttaacCAGTTTCAATACCAACG
AATACGATAGATTTCTTACTATAAAAATCCGGAGTGATATTATAAATTTT
CCAATCTGCGCTATTTCGACCTTCACAACCACGTATAAATTGACGGCGTA
GATTAATGGAGAATGGGTGTAGCAAAATAaacgtcatttttttccaatat
gtttTTGGTAAATGCTCTACATTTATTTGATTAGAAGGTTCAGAACCTTC
CCATGGATTAAAGTGTTTAGAAGATTCGAAAGTTTGCAATGTCAGCTCCT
TTGATTCTTCATCAATCTCCTTTGTTCCAATTATAAGTTTTGAGTCATAA
AAAATGGATTCACTTTCACAACCTCGACGTTTTACATTATCGTACCAATC
TGCGTAAAAGTTATCAAATTTTAAGCCCCGTAAAATGTCATGTTTATAAC
TCTCCAAACCCCATTTAGCACCTGTGCAGTATCCATCGGTGTGCTTTTCA
ACGACCgatttcaattctttgatttctttctcgttttcttcttctttcct
tTTTAATCCTTCCCATTCTTTTTGTCCAGAGTTTGATTCCTCgagttttc
tttttatttctgtCAGTTTTTGTTCATTCTGTTTCTCCCGTGTTTTCAAT
CCTTGAANtagataaacgttgaaacaacgttgtgtgccagctgggtcccG
TGTTTTCAATCTTTCTAGATTAACGGTAGTCAGATCAGCAAGTCTTGTTT
CCAATTCCTCGACTCGTACTCTTTTCTTTGGTGGGCTCTCCACTAAGACT
GTACTTGCAGTCGAGTTTGCTTGCTGCATATTTTCTTCAATCGCCTTCAA
TCTTTCGCTCAAGGTTGTAATTTCCGTTTCAAGATTTTTCTTTGCTTCTG
CTTTTACAGTGTTTAGTTTCTTCAATCGAGTCATTCAATTGTACACAAAG
CTCTTCAAATTTCTTATCAATCTTCTGTTCCCATTTTTCTAAATCACCAG
GCGAGCCAACCGAGTCCTTTGAATTTTGACCGAATTGAACTTTTAGTTTT
AGTAATTCAACTTCATGCTTCATTGTCAGGTTTTCTTTCTCCAAAACAAA
TGTACTGATTTTATGTTCCATTTTCAGTGCTTGAATCTGCTGTTCATATG
TATATTTCTGCTCTGCAATTTCATTCTTTAGTTCTTGGTTTTCAACCACC
AAGTCCTGGATTGTTTTGGTTCTATCAATCTCAGCTGAATCcattttcga
acaaaaaaattttgattctcAAGCTTTAAATTTAGAGCATTTACAAGTCA
CAAGACAAACAGAAGCAACACTTTTTATTGATTTGTCTTATCTGTGCatc
gaaaatacaaaaataaaccaACAGTGACACATCATGTTGACTTTTAAGAT
CGAATTTCAAATTCCACAGAAAATGAAAGTTGGAC Run BLAST on NCBI protein sequence of TCONS_00046727-protein >TCONS_00046727-protein ID=TCONS_00046727-protein|Name=TCONS_00046727-protein|organism=Clytia hemisphaerica|type=polypeptide|length=301bp
MTRLKKLNTVKAEAKKNLETEITTLSERLKAIEENMQQANSTASTVLVES
PPKKRVRVEELETRLADLTTVNLERLKTRDPAGTQRCFNVYLXQGLKTRE
KQNEQKLTEIKRKLEESNSGQKEWEGLKRKEEENEKEIKELKSVVEKHTD
GYCTGAKWGLESYKHDILRGLKFDNFYADWYDNVKRRGCESESIFYDSKL
IIGTKEIDEESKELTLQTFESSKHFNPWEGSEPSNQINVEHLPKTYWKKM
TFILLHPFSINLRRQFIRGCEGRNSADWKIYNITPDFYSKKSIVFVGIET
G Run BLAST on NCBI transcript from alignment at scaffold_116:177691..179325 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046727 ID=TCONS_00046727|Name=TCONS_00046727|organism=Clytia hemisphaerica|type=transcript|length=1635bp|location=Sequence derived from alignment at scaffold_116:177691..179325 (Clytia hemisphaerica)
GTCCAACTTTCATTTTCTGTGGAATTTGAAATTCGATCTTAAAAGTCAAC
ATGATGTGTCACTGTtggtttatttttgtattttcgatGCACAGATAAGA
CAAATCAATAAAAAGTGTTGCTTCTGTTTGTCTTGTGACTTGTAAATGCT
CTAAATTTAAAGCTTgagaatcaaaatttttttgttcgaaaatgGATTCA
GCTGAGATTGATAGAACCAAAACAATCCAGGACTTGGTGGTTGAAAACCA
AGAACTAAAGAATGAAATTGCAGAGCAGAAATATACATATGAACAGCAGA
TTCAAGCACTGAAAATGGAACATAAAATCAGTACATTTGTTTTGGAGAAA
GAAAACCTGACAATGAAGCATGAAGTTGAATTACTAAAACTAAAAGTTCA
ATTCGGTCAAAATTCAAAGGACTCGGTTGGCTCGCCTGGTGATTTAGAAA
AATGGGAACAGAAGATTGATAAGAAATTTGAAGAGCTTTGTGTACAATTG
AATGACTCGATTGAAGAAACTAAACACTGTAAAAGCAGAAGCAAAGAAAA
ATCTTGAAACGGAAATTACAACCTTGAGCGAAAGATTGAAGGCGATTGAA
GAAAATATGCAGCAAGCAAACTCGACTGCAAGTACAGTCTTAGTGGAGAG
CCCACCAAAGAAAAGAGTACGAGTCGAGGAATTGGAAACAAGACTTGCTG
ATCTGACTACCGTTAATCTAGAAAGATTGAAAACACgggacccagctggc
acacaacgttgtttcaacgtttatctaNTTCAAGGATTGAAAACACGGGA
GAAACAGAATGAACAAAAACTGacagaaataaaaagaaaactcGAGGAAT
CAAACTCTGGACAAAAAGAATGGGAAGGATTAAAaaggaaagaagaagaa
aacgagaaagaaatcaaagaattgaaatcGGTCGTTGAAAAGCACACCGA
TGGATACTGCACAGGTGCTAAATGGGGTTTGGAGAGTTATAAACATGACA
TTTTACGGGGCTTAAAATTTGATAACTTTTACGCAGATTGGTACGATAAT
GTAAAACGTCGAGGTTGTGAAAGTGAATCCATTTTTTATGACTCAAAACT
TATAATTGGAACAAAGGAGATTGATGAAGAATCAAAGGAGCTGACATTGC
AAACTTTCGAATCTTCTAAACACTTTAATCCATGGGAAGGTTCTGAACCT
TCTAATCAAATAAATGTAGAGCATTTACCAAaaacatattggaaaaaaat
gacgttTATTTTGCTACACCCATTCTCCATTAATCTACGCCGTCAATTTA
TACGTGGTTGTGAAGGTCGAAATAGCGCAGATTGGAAAATTTATAATATC
ACTCCGGATTTTTATAGTAAGAAATCTATCGTATTCGTTGGTATTGAAAC
TGgttaaaaacacccctgtctcagtgacccggtggcttttaaaattacac
cggggataaaaaattttctttggaaatccaGTGGGGACTTTTCAAAGACA
GAAAATACCAGTGGGGACACAgaattagaataaaaatttcagtggggatt
tcgaaattttcttttttttccaagtttgttgaaACAGTACAGTAAGTGTG
ATAAGCAAgcaattttatttaaatctttatgtaat Coding sequence (CDS) from alignment at scaffold_116:177691..179325 >TCONS_00046727 ID=TCONS_00046727|Name=TCONS_00046727|organism=Clytia hemisphaerica|type=CDS|length=906bp|location=Sequence derived from alignment at scaffold_116:177691..179325 (Clytia hemisphaerica)
ATGACTCGATTGAAGAAACTAAACACTGTAAAAGCAGAAGCAAAGAAAAA
TCTTGAAACGGAAATTACAACCTTGAGCGAAAGATTGAAGGCGATTGAAG
AAAATATGCAGCAAGCAAACTCGACTGCAAGTACAGTCTTAGTGGAGAGC
CCACCAAAGAAAAGAGTACGAGTCGAGGAATTGGAAACAAGACTTGCTGA
TCTGACTACCGTTAATCTAGAAAGATTGAAAACACgggacccagctggca
cacaacgttgtttcaacgtttatctaNTTCAAGGATTGAAAACACGGGAG
AAACAGAATGAACAAAAACTGacagaaataaaaagaaaactcGAGGAATC
AAACTCTGGACAAAAAGAATGGGAAGGATTAAAaaggaaagaagaagaaa
acgagaaagaaatcaaagaattgaaatcGGTCGTTGAAAAGCACACCGAT
GGATACTGCACAGGTGCTAAATGGGGTTTGGAGAGTTATAAACATGACAT
TTTACGGGGCTTAAAATTTGATAACTTTTACGCAGATTGGTACGATAATG
TAAAACGTCGAGGTTGTGAAAGTGAATCCATTTTTTATGACTCAAAACTT
ATAATTGGAACAAAGGAGATTGATGAAGAATCAAAGGAGCTGACATTGCA
AACTTTCGAATCTTCTAAACACTTTAATCCATGGGAAGGTTCTGAACCTT
CTAATCAAATAAATGTAGAGCATTTACCAAaaacatattggaaaaaaatg
acgttTATTTTGCTACACCCATTCTCCATTAATCTACGCCGTCAATTTAT
ACGTGGTTGTGAAGGTCGAAATAGCGCAGATTGGAAAATTTATAATATCA
CTCCGGATTTTTATAGTAAGAAATCTATCGTATTCGTTGGTATTGAAACT
Ggttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046727-exon-scaffold_116-1491911889:177691..179325 | TCONS_00046727-exon-scaffold_116-1491911889:177691..179325 | Clytia hemisphaerica | exon |
| TCONS_00046727-exon-scaffold_116-1510915933:177691..179325 | TCONS_00046727-exon-scaffold_116-1510915933:177691..179325 | Clytia hemisphaerica | exon |
| TCONS_00046727-exon-scaffold_116-1575043694:177691..179325 | TCONS_00046727-exon-scaffold_116-1575043694:177691..179325 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_116 | supercontig | scaffold_116:177691..179325 . |
Blast
The following BLAST results are available for this feature:
|
