TCONS_00046728 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046728
Unique NameTCONS_00046728
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length276

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046728 ID=TCONS_00046728|Name=TCONS_00046728|organism=Clytia hemisphaerica|type=transcript|length=276bp
ATAAAAATCCGGAGTGATATTATAAATTTTCCAATCTGCGCTATTTCGAC
CTTCACAACCACGTATAAATTGACGGCGTAGATTAATGGAGAATGGGTGT
AGCAAAATAaacgtcatttttttccaatatgtttTTGGTAAATGCTCTAC
ATTTATTTGATTAGAAGGTTCAGAACCTTCCCATGGATTAAAGTGTTTAG
AAGATTCGAAAGTTTGCAATGTCAGCTCCTTTGATTCTTCATCAATCTCC
TTTGTTCCAATTATAAGTTTTGAGTC
Run BLAST on NCBI

transcript from alignment at scaffold_116:178780..179055

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046728 ID=TCONS_00046728|Name=TCONS_00046728|organism=Clytia hemisphaerica|type=transcript|length=276bp|location=Sequence derived from alignment at scaffold_116:178780..179055 (Clytia hemisphaerica)
GACTCAAAACTTATAATTGGAACAAAGGAGATTGATGAAGAATCAAAGGA
GCTGACATTGCAAACTTTCGAATCTTCTAAACACTTTAATCCATGGGAAG
GTTCTGAACCTTCTAATCAAATAAATGTAGAGCATTTACCAAaaacatat
tggaaaaaaatgacgttTATTTTGCTACACCCATTCTCCATTAATCTACG
CCGTCAATTTATACGTGGTTGTGAAGGTCGAAATAGCGCAGATTGGAAAA
TTTATAATATCACTCCGGATTTTTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029813XLOC_029813Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046728-exon-scaffold_116-1491911889:178780..179055TCONS_00046728-exon-scaffold_116-1491911889:178780..179055Clytia hemisphaericaexon
TCONS_00046728-exon-scaffold_116-1510915933:178780..179055TCONS_00046728-exon-scaffold_116-1510915933:178780..179055Clytia hemisphaericaexon
TCONS_00046728-exon-scaffold_116-1575043694:178780..179055TCONS_00046728-exon-scaffold_116-1575043694:178780..179055Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_116supercontigscaffold_116:178780..179055 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.342995	0	0	0	0.649821	1.10995	1.59181	0	0.26863	0.855604	0	1.25527	4.46853	1.07213	1.84616	0	0	0	8.60307e-06	0	1.40105	1.88585	5.33958	2.84336	0.473396	2.27524	7.20992
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046728 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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