TCONS_00046729 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046729
Unique NameTCONS_00046729
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length290

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046729 ID=TCONS_00046729|Name=TCONS_00046729|organism=Clytia hemisphaerica|type=transcript|length=290bp
GTCGACACCACACTATTAACGGGTGGAGGACTAGTCCAGACATCAAACAG
AGAAGGGGAGACTGTACGTATTTCTGTACTGGCTATATCTTACAATTACA
TAAAAGTCTTACCTTATACACACGCCACAGAAACCCACCACTCCATTTCA
GGCCCGAAACTAGACTCCCAGATCAGGCGATCTGAGTAGAGTAAAACACT
TTCAAGTTCATTCGACCGTAACGAGGGCGTTACGGGCGTGGAAGGTGGTT
TCTGGGCGTAGTACAGAGGCTATAGAATCGCCTCTGTACA
Run BLAST on NCBI

transcript from alignment at scaffold_116:253358..253647

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046729 ID=TCONS_00046729|Name=TCONS_00046729|organism=Clytia hemisphaerica|type=transcript|length=290bp|location=Sequence derived from alignment at scaffold_116:253358..253647 (Clytia hemisphaerica)
TGTACAGAGGCGATTCTATAGCCTCTGTACTACGCCCAGAAACCACCTTC
CACGCCCGTAACGCCCTCGTTACGGTCGAATGAACTTGAAAGTGTTTTAC
TCTACTCAGATCGCCTGATCTGGGAGTCTAGTTTCGGGCCTGAAATGGAG
TGGTGGGTTTCTGTGGCGTGTGTATAAGGTAAGACTTTTATGTAATTGTA
AGATATAGCCAGTACAGAAATACGTACAGTCTCCCCTTCTCTGTTTGATG
TCTGGACTAGTCCTCCACCCGTTAATAGTGTGGTGTCGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029814XLOC_029814Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046729-exon-scaffold_116-1491911889:253358..253647TCONS_00046729-exon-scaffold_116-1491911889:253358..253647Clytia hemisphaericaexon
TCONS_00046729-exon-scaffold_116-1510915933:253358..253647TCONS_00046729-exon-scaffold_116-1510915933:253358..253647Clytia hemisphaericaexon
TCONS_00046729-exon-scaffold_116-1575043694:253358..253647TCONS_00046729-exon-scaffold_116-1575043694:253358..253647Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_116supercontigscaffold_116:253358..253647 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.87246	1.90333	0	2.0859	0.588281	2.00552	4.00989	8.40086	2.20562	5.83971	5.5892	4.92178	3.7716	4.44579	1.64176	3.04536	2.47329	0.671305	1.48378	5.33769	1.57292	5.11073	1.76719	1.68358	1.02554	1.254	0	1.60632	0.679751	1.54211
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046729 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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