TCONS_00046730 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046730
Unique NameTCONS_00046730
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length367

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046730 ID=TCONS_00046730|Name=TCONS_00046730|organism=Clytia hemisphaerica|type=transcript|length=367bp
CCCAGGAGAAACCATGAGATCAGGATCCGTCGCAGCAGCAATCACCACGC
TTGGATGAGAACGCAGTTGATAactaaaaagagaaaaggaaGAAGCAGAA
AGCAGAACAAAAACTACAGGGGGTAAGGAGAGGGTGGGAGGGAAAGATTG
AAGTTGTGATCAATTGAGACTGAGCTGAACTGCGCTGAAAAGGGGCTTGA
CGGTAGAATATATAGGCGAAGGAAAGAATAACCAGCAGCCGAAATATACT
ATTTCATAGCCGCCTCGGTGCGGTGGCGGGATGTACTTCATTCGACTTGG
AATTAACCTGAGCTAAGGTTTAGCTCCAATTAATTCCCACGTTTCAGATG
CAATTAAAGTATGAGGC
Run BLAST on NCBI

transcript from alignment at scaffold_116:256349..256715

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046730 ID=TCONS_00046730|Name=TCONS_00046730|organism=Clytia hemisphaerica|type=transcript|length=367bp|location=Sequence derived from alignment at scaffold_116:256349..256715 (Clytia hemisphaerica)
GCCTCATACTTTAATTGCATCTGAAACGTGGGAATTAATTGGAGCTAAAC CTTAGCTCAGGTTAATTCCAAGTCGAATGAAGTACATCCCGCCACCGCAC CGAGGCGGCTATGAAATAGTATATTTCGGCTGCTGGTTATTCTTTCCTTC GCCTATATATTCTACCGTCAAGCCCCTTTTCAGCGCAGTTCAGCTCAGTC TCAATTGATCACAACTTCAATCTTTCCCTCCCACCCTCTCCTTACCCCCT GTAGTTTTTGTTCTGCTTTCTGCTTCttccttttctctttttagtTATCA ACTGCGTTCTCATCCAAGCGTGGTGATTGCTGCTGCGACGGATCCTGATC TCATGGTTTCTCCTGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029815XLOC_029815Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046730-exon-scaffold_116-1491911889:256349..256715TCONS_00046730-exon-scaffold_116-1491911889:256349..256715Clytia hemisphaericaexon
TCONS_00046730-exon-scaffold_116-1510915933:256349..256715TCONS_00046730-exon-scaffold_116-1510915933:256349..256715Clytia hemisphaericaexon
TCONS_00046730-exon-scaffold_116-1575043694:256349..256715TCONS_00046730-exon-scaffold_116-1575043694:256349..256715Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_116supercontigscaffold_116:256349..256715 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.52023 3.40343 1.41857 1.33752 0.605617 0.557731 1.16385 1.62192 2.77388 3.32201 4.01518 2.57578 1.89497 3.09864 0.148612 0.315973 1.60611 1.34976 0 0 1.29081 2.16063 0.945645 0.937853 0.850105 0.228103 2.1505 1.54204 2.98013 3.14097
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046730 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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