TCONS_00046733 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046733
Unique NameTCONS_00046733
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length483

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046733 ID=TCONS_00046733|Name=TCONS_00046733|organism=Clytia hemisphaerica|type=transcript|length=483bp
TCCAGCCCCACAACTATGATCAACGATCTTGGCTGGGAATCCCTTGAATT
CGGTCGTAAGAAAAACAATTTACTCATGCTTcacaaaattgttaatgaaa
aGATTTCCCTACCAAAAGACTTCTTGCCCAAACGAGCAAGAATAAGCAAC
AGGTTCCAACAAGTGCGTGGTAGAGTCCTGGCGTATTCCAACTCTTTTAT
CCCTACCACCATTGACTGGTGGAAGGAACTTCCAAATGAAGTGACCATGA
ATGATAACTTAACAACATTTTCTGAAGAACTTCTAAAACATATTTAAATC
TCATTTATCCTAACTATATATTTTTACAGCTATAACCTTACAATGAATCT
TTACTTCCACTTTCAAGTCTTAGCACCTTACAATCTTTGTGCCATTAATT
CATTCATTCCTGCTTAGCATCTACTAATCTCTTGCATTATTTCTGAGGTT
TACTCAATACTAGGAaggagttttattttattt
Run BLAST on NCBI

transcript from alignment at scaffold_116:286135..286617

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046733 ID=TCONS_00046733|Name=TCONS_00046733|organism=Clytia hemisphaerica|type=transcript|length=483bp|location=Sequence derived from alignment at scaffold_116:286135..286617 (Clytia hemisphaerica)
aaataaaataaaactcctTCCTAGTATTGAGTAAACCTCAGAAATAATGC
AAGAGATTAGTAGATGCTAAGCAGGAATGAATGAATTAATGGCACAAAGA
TTGTAAGGTGCTAAGACTTGAAAGTGGAAGTAAAGATTCATTGTAAGGTT
ATAGCTGTAAAAATATATAGTTAGGATAAATGAGATTTAAATATGTTTTA
GAAGTTCTTCAGAAAATGTTGTTAAGTTATCATTCATGGTCACTTCATTT
GGAAGTTCCTTCCACCAGTCAATGGTGGTAGGGATAAAAGAGTTGGAATA
CGCCAGGACTCTACCACGCACTTGTTGGAACCTGTTGCTTATTCTTGCTC
GTTTGGGCAAGAAGTCTTTTGGTAGGGAAATCttttcattaacaattttg
tgAAGCATGAGTAAATTGTTTTTCTTACGACCGAATTCAAGGGATTCCCA
GCCAAGATCGTTGATCATAGTTGTGGGGCTGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029818XLOC_029818Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046733-exon-scaffold_116-1491911889:286135..286617TCONS_00046733-exon-scaffold_116-1491911889:286135..286617Clytia hemisphaericaexon
TCONS_00046733-exon-scaffold_116-1510915933:286135..286617TCONS_00046733-exon-scaffold_116-1510915933:286135..286617Clytia hemisphaericaexon
TCONS_00046733-exon-scaffold_116-1575043694:286135..286617TCONS_00046733-exon-scaffold_116-1575043694:286135..286617Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_116supercontigscaffold_116:286135..286617 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.29684	0.494936	0.269783	0.887193	0.205046	0.906757	0.420732	0.217375	0.632498	2.07604	0.60258	2.49586	0.655403	0.810211	0.310661	0.1857	0.519785	0.628448	0.137641	0.601754	0.741771	0.822305	0	0.28945	0	0.139128	1.03665	0.380614	0.320174	0.631545
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046733 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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