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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046739 ID=TCONS_00046739|Name=TCONS_00046739|organism=Clytia hemisphaerica|type=transcript|length=1773bp
TGAAGCTTACTTTTTCGATGGCAAGGGAAAAGTTATGGGGAAGGGGACTA
AAATGGAATAGTTGAGATTTAGAGATCGATTGAGTGTAACGTTGAGCGGT
gataaaagtaaaagtaaaatggAGGAAGGGTCTGAATAGGGGGAGTGTTA
GGAATGGGGAGGAGGGAGACATAGGAATTGAGAGAAGGGGGTTTAAAGGG
CAAGGTAAGGTTTGAAAGGCGTTTTGAGAAACAAGAGAAGATtgacaaaa
aagagaaaagaattgATATGAGAATTGGTAAAAGTtttatctttttgatt
tttggccaCAAACAATTTCCACAGTGGAATCTTTggttttcatttcaaag
aacagAGAATTTCAAGACTTTACCGAGAGAAGGAGTCTAGTACCCGAGCA
TGCCCGTTGGATCTTTTATGAATCAGAAAATTAACCCTAAAAGAAAGTAA
ACCAGCAAGCTAACATTTGCAACGAGTTCAATTTATTGACATAGAATACT
CTCTAAGTTTCttgtttttctaaaagtttGGTCATGTGCTATTATTTGTA
AACTTATATTACAGTTTCCTGTCCACAGAAAGATTCAGTCGAACTTAACT
TGCGTACTATACTCCTTCTCGTGGGAGGCTTGAAAAACTTTGCTCTTTCA
AATGGAAACAAAAGATTCAACAATAGAAGTTCATTCCACGAATCAAAAGA
AAGGAACCTTAAAAactagaaaacaaaaattggaaagaaaaGAGAATGAT
TACAAGATATTTATTGCGAAGAGTTATTGTCGTTGTTGTTGAAAGAACTT
TTTAGTTCATTCAATCCTTGTTCCAAGTCCATGAAAAATTGATCGAAATG
TTCTTCAATGACATCGATAGCTTGCTTGGTTTTGCTGTCAAAGAATTTGG
ATGGNAATGTTGTTCAATGACATCGATAGTTTGCTTGGATTTACTCTCAA
AGAATTTGGATGACAAGGTGTTGTTTGCACTTTGAGGCACGTGAGTTTGT
GAGTAGTTTTGGTGCAAGTCTCTTTGTCTTTCATGACTGATCAAGTCGGC
GCAATTATTGTCAACTTGTTTAGTAGTCAAGAGATCTTCGTATTCCATTG
GAGTATTATCGACTTGTTCAGCAAGCTCGTTATATTCGATTTGTAGAGCG
TACATTTCTTGTCGCTCGGTGTTGATGACCGCTTCCATTTGGTCCTTTTG
CTTGCTCGTAAAAAGCCAATCTATCTTTTAACGATCGGATACGACGAGAA
GATCTCTTGATGCGTTGGTCTTGTTCCTTTGTTGTGAGCATCAAATCTTC
GATGCGAAGTTCCAAATCTTCTTTCTCTTCCTCGACATGTCGGAgcattt
tggtgaaatatttcgtGCTCCTCTCGCACTTTTCGAATTCTATTTGAAGG
TTTGCGATTTGCTTATCTTTTTCAGCGCGTAATTCTTTCATCCCTTTCTT
CAACAAATCGATCGCAATTCCCTTGGAAATGTTTTCTTGTTCCAAAGATT
CGATTTTATCTTTGAATGTTCTGTCTTCTTGTAAACGGATTTGGTTGACC
TCTCTTTGGAGGGAGCCAATGACAGCATCTCTCGAATGAACTTTATTTTG
CAATAATGCGATCTCTTCTCGCAAAATATGTTTTCCTTCGAAGCGAGCGC
CATTTGTTTCCTTTTGAAGAATATTCAGAACTGCGTCTTTTGAAATGACT
TTATTGTTCAGGGAGGCGTTTTCGACTTCCAACCGAAGAAGTCTCTCCCG
AAGTTGTCGGTTCTCATAAACCT Run BLAST on NCBI protein sequence of TCONS_00046739-protein >TCONS_00046739-protein ID=TCONS_00046739-protein|Name=TCONS_00046739-protein|organism=Clytia hemisphaerica|type=polypeptide|length=213bp
VYENRQLRERLLRLEVENASLNNKVISKDAVLNILQKETNGARFEGKHIL
REEIALLQNKVHSRDAVIGSLQREVNQIRLQEDRTFKDKIESLEQENISK
GIAIDLLKKGMKELRAEKDKQIANLQIEFEKCERSTKYFTKMLRHVEEEK
EDLELRIEDLMLTTKEQDQRIKRSSRRIRSLKDRLAFYEQAKGPNGSGHQ
HRATRNVRSTNRI Run BLAST on NCBI transcript from alignment at scaffold_116:398604..400376 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046739 ID=TCONS_00046739|Name=TCONS_00046739|organism=Clytia hemisphaerica|type=transcript|length=1773bp|location=Sequence derived from alignment at scaffold_116:398604..400376 (Clytia hemisphaerica)
AGGTTTATGAGAACCGACAACTTCGGGAGAGACTTCTTCGGTTGGAAGTC
GAAAACGCCTCCCTGAACAATAAAGTCATTTCAAAAGACGCAGTTCTGAA
TATTCTTCAAAAGGAAACAAATGGCGCTCGCTTCGAAGGAAAACATATTT
TGCGAGAAGAGATCGCATTATTGCAAAATAAAGTTCATTCGAGAGATGCT
GTCATTGGCTCCCTCCAAAGAGAGGTCAACCAAATCCGTTTACAAGAAGA
CAGAACATTCAAAGATAAAATCGAATCTTTGGAACAAGAAAACATTTCCA
AGGGAATTGCGATCGATTTGTTGAAGAAAGGGATGAAAGAATTACGCGCT
GAAAAAGATAAGCAAATCGCAAACCTTCAAATAGAATTCGAAAAGTGCGA
GAGGAGCacgaaatatttcaccaaaatgcTCCGACATGTCGAGGAAGAGA
AAGAAGATTTGGAACTTCGCATCGAAGATTTGATGCTCACAACAAAGGAA
CAAGACCAACGCATCAAGAGATCTTCTCGTCGTATCCGATCGTTAAAAGA
TAGATTGGCTTTTTACGAGCAAGCAAAAGGACCAAATGGAAGCGGTCATC
AACACCGAGCGACAAGAAATGTACGCTCTACAAATCGAATATAACGAGCT
TGCTGAACAAGTCGATAATACTCCAATGGAATACGAAGATCTCTTGACTA
CTAAACAAGTTGACAATAATTGCGCCGACTTGATCAGTCATGAAAGACAA
AGAGACTTGCACCAAAACTACTCACAAACTCACGTGCCTCAAAGTGCAAA
CAACACCTTGTCATCCAAATTCTTTGAGAGTAAATCCAAGCAAACTATCG
ATGTCATTGAACAACATTNCCATCCAAATTCTTTGACAGCAAAACCAAGC
AAGCTATCGATGTCATTGAAGAACATTTCGATCAATTTTTCATGGACTTG
GAACAAGGATTGAATGAACTAAAAAGTTCTTTCAACAACAACGACAATAA
CTCTTCGCAATAAATATCTTGTAATCATTCTCttttctttccaatttttg
ttttctagtTTTTAAGGTTCCTTTCTTTTGATTCGTGGAATGAACTTCTA
TTGTTGAATCTTTTGTTTCCATTTGAAAGAGCAAAGTTTTTCAAGCCTCC
CACGAGAAGGAGTATAGTACGCAAGTTAAGTTCGACTGAATCTTTCTGTG
GACAGGAAACTGTAATATAAGTTTACAAATAATAGCACATGACCaaactt
ttagaaaaacaaGAAACTTAGAGAGTATTCTATGTCAATAAATTGAACTC
GTTGCAAATGTTAGCTTGCTGGTTTACTTTCTTTTAGGGTTAATTTTCTG
ATTCATAAAAGATCCAACGGGCATGCTCGGGTACTAGACTCCTTCTCTCG
GTAAAGTCTTGAAATTCTctgttctttgaaatgaaaaccAAAGATTCCAC
TGTGGAAATTGTTTGtggccaaaaatcaaaaagataaaACTTTTACCAAT
TCTCATATcaattcttttctcttttttgtcaATCTTCTCTTGTTTCTCAA
AACGCCTTTCAAACCTTACCTTGCCCTTTAAACCCCCTTCTCTCAATTCC
TATGTCTCCCTCCTCCCCATTCCTAACACTCCCCCTATTCAGACCCTTCC
TccattttacttttacttttatcACCGCTCAACGTTACACTCAATCGATC
TCTAAATCTCAACTATTCCATTTTAGTCCCCTTCCCCATAACTTTTCCCT
TGCCATCGAAAAAGTAAGCTTCA Coding sequence (CDS) from alignment at scaffold_116:398604..400376 >TCONS_00046739 ID=TCONS_00046739|Name=TCONS_00046739|organism=Clytia hemisphaerica|type=CDS|length=642bp|location=Sequence derived from alignment at scaffold_116:398604..400376 (Clytia hemisphaerica)
GTTTATGAGAACCGACAACTTCGGGAGAGACTTCTTCGGTTGGAAGTCGA
AAACGCCTCCCTGAACAATAAAGTCATTTCAAAAGACGCAGTTCTGAATA
TTCTTCAAAAGGAAACAAATGGCGCTCGCTTCGAAGGAAAACATATTTTG
CGAGAAGAGATCGCATTATTGCAAAATAAAGTTCATTCGAGAGATGCTGT
CATTGGCTCCCTCCAAAGAGAGGTCAACCAAATCCGTTTACAAGAAGACA
GAACATTCAAAGATAAAATCGAATCTTTGGAACAAGAAAACATTTCCAAG
GGAATTGCGATCGATTTGTTGAAGAAAGGGATGAAAGAATTACGCGCTGA
AAAAGATAAGCAAATCGCAAACCTTCAAATAGAATTCGAAAAGTGCGAGA
GGAGCacgaaatatttcaccaaaatgcTCCGACATGTCGAGGAAGAGAAA
GAAGATTTGGAACTTCGCATCGAAGATTTGATGCTCACAACAAAGGAACA
AGACCAACGCATCAAGAGATCTTCTCGTCGTATCCGATCGTTAAAAGATA
GATTGGCTTTTTACGAGCAAGCAAAAGGACCAAATGGAAGCGGTCATCAA
CACCGAGCGACAAGAAATGTACGCTCTACAAATCGAATATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046739-exon-scaffold_116-1491911889:398604..400376 | TCONS_00046739-exon-scaffold_116-1491911889:398604..400376 | Clytia hemisphaerica | exon |
| TCONS_00046739-exon-scaffold_116-1510915933:398604..400376 | TCONS_00046739-exon-scaffold_116-1510915933:398604..400376 | Clytia hemisphaerica | exon |
| TCONS_00046739-exon-scaffold_116-1575043694:398604..400376 | TCONS_00046739-exon-scaffold_116-1575043694:398604..400376 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_116 | supercontig | scaffold_116:398604..400376 . |
Blast
The following BLAST results are available for this feature:
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