TCONS_00046743 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046743
Unique NameTCONS_00046743
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length306

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046743 ID=TCONS_00046743|Name=TCONS_00046743|organism=Clytia hemisphaerica|type=transcript|length=306bp
TTGTTTCGTAGGGTTCGGAGTAGCCTTCAATGTGGTAGTCTTGTATGAGA
CgttcttttttcgaatgtttcggCTTTACTTCACAAATTGCAATGATATC
GGGTTGTTCTTTTGAAATCACTTCATTTAgttcttttctctttattttag
TTAGTTGGATTAGTATATAGTATGTTAAGGTTTTTTCGTTTGTTAGTTTT
TTCGTCTTTCTTCTTTGTTACGTCTTTTTTTCGTGTTTGGTTTATTGCCG
ATCTTTGGCGTTTATCTTCTTTACACCGAATCCGTTTTTTGCAAAACCCC
GCACTC
Run BLAST on NCBI

transcript from alignment at scaffold_116:575215..575520

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046743 ID=TCONS_00046743|Name=TCONS_00046743|organism=Clytia hemisphaerica|type=transcript|length=306bp|location=Sequence derived from alignment at scaffold_116:575215..575520 (Clytia hemisphaerica)
GAGTGCGGGGTTTTGCAAAAAACGGATTCGGTGTAAAGAAGATAAACGCC
AAAGATCGGCAATAAACCAAACACGAAAAAAAGACGTAACAAAGAAGAAA
GACGAAAAAACTAACAAACGAAAAAACCTTAACATACTATATACTAATCC
AACTAActaaaataaagagaaaagaacTAAATGAAGTGATTTCAAAAGAA
CAACCCGATATCATTGCAATTTGTGAAGTAAAGccgaaacattcgaaaaa
agaacGTCTCATACAAGACTACCACATTGAAGGCTACTCCGAACCCTACG
AAACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029828XLOC_029828Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046743-exon-scaffold_116-1491911889:575215..575520TCONS_00046743-exon-scaffold_116-1491911889:575215..575520Clytia hemisphaericaexon
TCONS_00046743-exon-scaffold_116-1510915933:575215..575520TCONS_00046743-exon-scaffold_116-1510915933:575215..575520Clytia hemisphaericaexon
TCONS_00046743-exon-scaffold_116-1575043694:575215..575520TCONS_00046743-exon-scaffold_116-1575043694:575215..575520Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_116supercontigscaffold_116:575215..575520 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.63963	0.791301	3.61823	1.87764	0.49289	0	0	1.10958	0	0.478003	2.59206	1.45058	1.09682	1.51464	0.20754	0	0.548751	0.925635	1.16559	1.2197	4.18138	4.0033	1.02143	1.52398	0	0.700442	3.81277	3.80656	2.74899	1.12933
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046743 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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