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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046748 ID=TCONS_00046748|Name=TCONS_00046748|organism=Clytia hemisphaerica|type=transcript|length=1531bp
TTAGATATCTGAAAAATACTTTAAAGATTATATGAAAAGAGATAATAGTT
TAATTCTTATGACTTTGGTTTTTTGGGTTTTGGTGAGAAAcgagaaagga
aaaaaaaagttttgtaacTCATAATGATCAAAGTGAAAGATGCTTTTCGA
CGCATTGGACCTTCATCAGCTCCAGTTAAAAGAAAAGATACACCAGTACC
GTTACGTGAATCGAATGTATCTCCAGGGGCAACCAAGATGTTAGATAAAC
AACGTTGCAAAAAATCAGATTCCAATTCAAATATTATTTCGGAGGAATCA
GAAATCAAGGAGGAAAATAGTACAATGTATTCTAAGAAAATGGACAATGA
CCAAGGTCTACACCAAAGAAATTCGAATGTTGTTCTGAATGGAGTTGCAA
CTATCAAAGAAGAGAGCGCTAGTTGTCAGAGTCTTCAACCCTTAGATTCT
AATGTACTACAGGAACAGCAAACCGAGGATGTTTTTAAAATATCTGAAAG
TATGTCATCTCCACAGATTCAAGCATCCATTGATGACACAGTTGTTCGAA
GTCCACCTAAAGCTAGACGAAGCCAAGGACGATCTTTACGTAAAAATTCG
GGTCAAAAGACTCGCAGTGCAGAGGACTTGACATTGTTATCAAACAGATC
TGGATTAGATTCAAATGACCAGAAAACAACAAATGTTCCTCTCCATCGCC
ATCGTCGTGTGAGTAATAAAAGCAAACGTAAAATTATCGCACAATCTTAT
GAACCTAATAAACTACTTGAAAAAGCAATCGAGGAAGGTTATTCAGATTT
GGTTGAAAGTCTTATAACAAGTGGACAAGTTAACATTAATAAATTGAACG
GCTCTGGTAAAGCGCCTTTACATTTGGCTGCTTTTGAAGGGAAAGATGAT
ATAGTTAAGATCCTACTTAAACACGGAGCGTAtattgatattttgtcaaa
caCTGGATTAACAGCTTTACAAGCAGCTGTAATGGAAGGGAACTTCGATA
GCGCACAATTGCTGATAAGTAATGGTGCTGACCAGGGCTTTGTCTTGGAT
GGACCATTAAATCCAAGAGTCAGTCGTGATTGGTCTGTTACTTGATTTTA
TTTATTGGACTTCTCTGGTGTAATTGTAAAATGGCCACAATTTGTGACTA
AGAATTtcctcccccccccctattATCAATGTTGATGGGTGGAAAGGCTG
CCATTAGGTCCAGAAAAAGCTCACATCAACACTGATATACTTAGGGGGAA
tcgatttttcataaaattgccacatattttgtcactgattgcagattttt
tagcttttgattACTAGTGAGTTAATGTATcggtgtttttcagcgacgga
aacggttagtttttcttttatctaGAATCTAACTGAATGAGGACGCAGAC
GGTTTTTGGGGTCTTAAGGGGGGATTGTTTCGGTAAATGTATAAACTTGC
TACTATTAATCATTTTACAGATAGACTGCAAAGAAATCCTCTTTTGTGCT
GAATGGTTTGCTTGtagaaaagccccccccc Run BLAST on NCBI protein sequence of TCONS_00046748-protein >TCONS_00046748-protein ID=TCONS_00046748-protein|Name=TCONS_00046748-protein|organism=Clytia hemisphaerica|type=polypeptide|length=323bp
MIKVKDAFRRIGPSSAPVKRKDTPVPLRESNVSPGATKMLDKQRCKKSDS
NSNIISEESEIKEENSTMYSKKMDNDQGLHQRNSNVVLNGVATIKEESAS
CQSLQPLDSNVLQEQQTEDVFKISESMSSPQIQASIDDTVVRSPPKARRS
QGRSLRKNSGQKTRSAEDLTLLSNRSGLDSNDQKTTNVPLHRHRRVSNKS
KRKIIAQSYEPNKLLEKAIEEGYSDLVESLITSGQVNINKLNGSGKAPLH
LAAFEGKDDIVKILLKHGAYIDILSNTGLTALQAAVMEGNFDSAQLLISN
GADQGFVLDGPLNPRVSRDWSVT Run BLAST on NCBI transcript from alignment at scaffold_116:587340..588870 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046748 ID=TCONS_00046748|Name=TCONS_00046748|organism=Clytia hemisphaerica|type=transcript|length=1531bp|location=Sequence derived from alignment at scaffold_116:587340..588870 (Clytia hemisphaerica)
gggggggggcttttctaCAAGCAAACCATTCAGCACAAAAGAGGATTTCT
TTGCAGTCTATCTGTAAAATGATTAATAGTAGCAAGTTTATACATTTACC
GAAACAATCCCCCCTTAAGACCCCAAAAACCGTCTGCGTCCTCATTCAGT
TAGATTCtagataaaagaaaaactaaccgtttccgtcgctgaaaaacacc
gATACATTAACTCACTAGTaatcaaaagctaaaaaatctgcaatcagtga
caaaatatgtggcaattttatgaaaaatcgaTTCCCCCTAAGTATATCAG
TGTTGATGTGAGCTTTTTCTGGACCTAATGGCAGCCTTTCCACCCATCAA
CATTGATaataggggggggggaggaAATTCTTAGTCACAAATTGTGGCCA
TTTTACAATTACACCAGAGAAGTCCAATAAATAAAATCAAGTAACAGACC
AATCACGACTGACTCTTGGATTTAATGGTCCATCCAAGACAAAGCCCTGG
TCAGCACCATTACTTATCAGCAATTGTGCGCTATCGAAGTTCCCTTCCAT
TACAGCTGCTTGTAAAGCTGTTAATCCAGtgtttgacaaaatatcaataT
ACGCTCCGTGTTTAAGTAGGATCTTAACTATATCATCTTTCCCTTCAAAA
GCAGCCAAATGTAAAGGCGCTTTACCAGAGCCGTTCAATTTATTAATGTT
AACTTGTCCACTTGTTATAAGACTTTCAACCAAATCTGAATAACCTTCCT
CGATTGCTTTTTCAAGTAGTTTATTAGGTTCATAAGATTGTGCGATAATT
TTACGTTTGCTTTTATTACTCACACGACGATGGCGATGGAGAGGAACATT
TGTTGTTTTCTGGTCATTTGAATCTAATCCAGATCTGTTTGATAACAATG
TCAAGTCCTCTGCACTGCGAGTCTTTTGACCCGAATTTTTACGTAAAGAT
CGTCCTTGGCTTCGTCTAGCTTTAGGTGGACTTCGAACAACTGTGTCATC
AATGGATGCTTGAATCTGTGGAGATGACATACTTTCAGATATTTTAAAAA
CATCCTCGGTTTGCTGTTCCTGTAGTACATTAGAATCTAAGGGTTGAAGA
CTCTGACAACTAGCGCTCTCTTCTTTGATAGTTGCAACTCCATTCAGAAC
AACATTCGAATTTCTTTGGTGTAGACCTTGGTCATTGTCCATTTTCTTAG
AATACATTGTACTATTTTCCTCCTTGATTTCTGATTCCTCCGAAATAATA
TTTGAATTGGAATCTGATTTTTTGCAACGTTGTTTATCTAACATCTTGGT
TGCCCCTGGAGATACATTCGATTCACGTAACGGTACTGGTGTATCTTTTC
TTTTAACTGGAGCTGATGAAGGTCCAATGCGTCGAAAAGCATCTTTCACT
TTGATCATTATGAgttacaaaactttttttttcctttctcgTTTCTCACC
AAAACCCAAAAAACCAAAGTCATAAGAATTAAACTATTATCTCTTTTCAT
ATAATCTTTAAAGTATTTTTCAGATATCTAA Coding sequence (CDS) from alignment at scaffold_116:587340..588870 >TCONS_00046748 ID=TCONS_00046748|Name=TCONS_00046748|organism=Clytia hemisphaerica|type=CDS|length=972bp|location=Sequence derived from alignment at scaffold_116:587340..588870 (Clytia hemisphaerica)
TCAAGTAACAGACCAATCACGACTGACTCTTGGATTTAATGGTCCATCCA
AGACAAAGCCCTGGTCAGCACCATTACTTATCAGCAATTGTGCGCTATCG
AAGTTCCCTTCCATTACAGCTGCTTGTAAAGCTGTTAATCCAGtgtttga
caaaatatcaataTACGCTCCGTGTTTAAGTAGGATCTTAACTATATCAT
CTTTCCCTTCAAAAGCAGCCAAATGTAAAGGCGCTTTACCAGAGCCGTTC
AATTTATTAATGTTAACTTGTCCACTTGTTATAAGACTTTCAACCAAATC
TGAATAACCTTCCTCGATTGCTTTTTCAAGTAGTTTATTAGGTTCATAAG
ATTGTGCGATAATTTTACGTTTGCTTTTATTACTCACACGACGATGGCGA
TGGAGAGGAACATTTGTTGTTTTCTGGTCATTTGAATCTAATCCAGATCT
GTTTGATAACAATGTCAAGTCCTCTGCACTGCGAGTCTTTTGACCCGAAT
TTTTACGTAAAGATCGTCCTTGGCTTCGTCTAGCTTTAGGTGGACTTCGA
ACAACTGTGTCATCAATGGATGCTTGAATCTGTGGAGATGACATACTTTC
AGATATTTTAAAAACATCCTCGGTTTGCTGTTCCTGTAGTACATTAGAAT
CTAAGGGTTGAAGACTCTGACAACTAGCGCTCTCTTCTTTGATAGTTGCA
ACTCCATTCAGAACAACATTCGAATTTCTTTGGTGTAGACCTTGGTCATT
GTCCATTTTCTTAGAATACATTGTACTATTTTCCTCCTTGATTTCTGATT
CCTCCGAAATAATATTTGAATTGGAATCTGATTTTTTGCAACGTTGTTTA
TCTAACATCTTGGTTGCCCCTGGAGATACATTCGATTCACGTAACGGTAC
TGGTGTATCTTTTCTTTTAACTGGAGCTGATGAAGGTCCAATGCGTCGAA
AAGCATCTTTCACTTTGATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046748-exon-scaffold_116-1491911889:587340..588870 | TCONS_00046748-exon-scaffold_116-1491911889:587340..588870 | Clytia hemisphaerica | exon |
| TCONS_00046748-exon-scaffold_116-1510915933:587340..588870 | TCONS_00046748-exon-scaffold_116-1510915933:587340..588870 | Clytia hemisphaerica | exon |
| TCONS_00046748-exon-scaffold_116-1575043694:587340..588870 | TCONS_00046748-exon-scaffold_116-1575043694:587340..588870 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_116 | supercontig | scaffold_116:587340..588870 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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