TCONS_00046750 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046750
Unique NameTCONS_00046750
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length468

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046750 ID=TCONS_00046750|Name=TCONS_00046750|organism=Clytia hemisphaerica|type=transcript|length=468bp
aaacgatatcactcttatttaaaaacaaaacctttaataccATTAACCGT
TAATAAGATACAAGGACACTAATCCCCTTATTATCGATTCTGGTTTATAA
TTAAGAATTATTCAATCATTAATGCATTGGTTTGTATTATCTTTCTAAAG
GTTGTTTTCGTTATAGTCTAAGCTTTGAAAGCGTTTAATATGTGTATTGA
ACAGGAAGAGCGGAGAGGAAAATGCTATCGGTGAgatttgttttatgttt
tgaattttgctgTACGAGACGTGCACTGGTTCTCGTGTTTTAAGACATGT
CTGGTgctttttcttgatttaaaaaagctgataaggtagtagcccggggt
ccacttaaaactttttttatagactggatggcgcgataaagtggcccggt
agtatatggtgatatgcttttgcttaggcggactgtaaaacagtccgcca
gatttaagttgtttttgg
Run BLAST on NCBI

transcript from alignment at scaffold_116:599401..599868

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046750 ID=TCONS_00046750|Name=TCONS_00046750|organism=Clytia hemisphaerica|type=transcript|length=468bp|location=Sequence derived from alignment at scaffold_116:599401..599868 (Clytia hemisphaerica)
ccaaaaacaacttaaatctggcggactgttttacagtccgcctaagcaaa
agcatatcaccatatactaccgggccactttatcgcgccatccagtctat
aaaaaaagttttaagtggaccccgggctactaccttatcagcttttttaa
atcaagaaaaagcACCAGACATGTCTTAAAACACGAGAACCAGTGCACGT
CTCGTAcagcaaaattcaaaacataaaacaaatcTCACCGATAGCATTTT
CCTCTCCGCTCTTCCTGTTCAATACACATATTAAACGCTTTCAAAGCTTA
GACTATAACGAAAACAACCTTTAGAAAGATAATACAAACCAATGCATTAA
TGATTGAATAATTCTTAATTATAAACCAGAATCGATAATAAGGGGATTAG
TGTCCTTGTATCTTATTAACGGTTAATggtattaaaggttttgtttttaa
ataagagtgatatcgttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029835XLOC_029835Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046750-exon-scaffold_116-1491911889:599401..599868TCONS_00046750-exon-scaffold_116-1491911889:599401..599868Clytia hemisphaericaexon
TCONS_00046750-exon-scaffold_116-1510915933:599401..599868TCONS_00046750-exon-scaffold_116-1510915933:599401..599868Clytia hemisphaericaexon
TCONS_00046750-exon-scaffold_116-1575043694:599401..599868TCONS_00046750-exon-scaffold_116-1575043694:599401..599868Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_116supercontigscaffold_116:599401..599868 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.136615	0	0.541574	0	0	0.535494	0.164871	0.230922	0.285958	0.425979	0.0955531	0.483574	0.0960287	0.31983	0.0834962	0.104954	0.427912	0.291407	0.472894	0.405757	0.591008	0.161613	0.313421	0.749111	0.928296	0	0.612171	0	0.370947
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046750 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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