TCONS_00046751 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046751
Unique NameTCONS_00046751
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length272

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046751 ID=TCONS_00046751|Name=TCONS_00046751|organism=Clytia hemisphaerica|type=transcript|length=272bp
GGCGTGTAGACGGAACAACCAACTTCTTTCGCAATTGGAAAACCTATAAA
GAAGGCTTCGGACAACTCCAACATGAACACTGGTTAGGGAACGACAATCT
GCATCTCCTCACTGCACAATCTGTTTTGACTGGATCTGAAGTTCGTTTCG
ATCTTCAATACAAAGATTCTACATCATGGAATTACGCGAAATATTCGACC
TTCCATATCGATGGTGAATCAAACGCATACCAATTGCATATTTATGGATA
TTCTGGAAATGCTGGTGATTCG
Run BLAST on NCBI

transcript from alignment at scaffold_116:666168..666439

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046751 ID=TCONS_00046751|Name=TCONS_00046751|organism=Clytia hemisphaerica|type=transcript|length=272bp|location=Sequence derived from alignment at scaffold_116:666168..666439 (Clytia hemisphaerica)
CGAATCACCAGCATTTCCAGAATATCCATAAATATGCAATTGGTATGCGT
TTGATTCACCATCGATATGGAAGGTCGAATATTTCGCGTAATTCCATGAT
GTAGAATCTTTGTATTGAAGATCGAAACGAACTTCAGATCCAGTCAAAAC
AGATTGTGCAGTGAGGAGATGCAGATTGTCGTTCCCTAACCAGTGTTCAT
GTTGGAGTTGTCCGAAGCCTTCTTTATAGGTTTTCCAATTGCGAAAGAAG
TTGGTTGTTCCGTCTACACGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029836XLOC_029836Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046751-exon-scaffold_116-1491911889:666168..666439TCONS_00046751-exon-scaffold_116-1491911889:666168..666439Clytia hemisphaericaexon
TCONS_00046751-exon-scaffold_116-1510915933:666168..666439TCONS_00046751-exon-scaffold_116-1510915933:666168..666439Clytia hemisphaericaexon
TCONS_00046751-exon-scaffold_116-1575043694:666168..666439TCONS_00046751-exon-scaffold_116-1575043694:666168..666439Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_116supercontigscaffold_116:666168..666439 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.550965	0	0	1.22064	0.743007	0	0	1.3263	0	0	0	1.46776	1.46572	0.761081	27.8442	48.0112	3.30886	4.66328	0	2.45152	2.66352	3.11801	16.4249	13.2096	2.95773	3.16765	0.755482	1.61254	67.2681	88.4732
Blast
[Close]
BLAST of TCONS_00046751 vs. Swiss-Prot (Human)
Match: TENX (Tenascin-X OS=Homo sapiens GN=TNXB PE=1 SV=4)

HSP 1 Score: 85.5001 bits (210), Expect = 5.462e-20
Identity = 39/90 (43.33%), Postives = 56/90 (62.22%), Query Frame = 3 
Query:    3 RVDGTTNFFRNWKTYKEGFGQLQHEHWLGNDNLHLLTAQSVLTGSEVRFDLQYKDSTSWNYAKYSTFHIDGESNAYQLHIYGYSGNAGDS 272
            R+DG T+F+R+W+ Y  GFG +  E WLGN+ LH LT     +   +R DL+  D     +A+Y +FH+D  +  Y+LH+ GY G AGDS
Sbjct: 4073 RMDGQTDFWRDWEDYAHGFGNISGEFWLGNEALHSLTQAGDYS---MRVDLRAGDEAV--FAQYDSFHVDSAAEYYRLHLEGYHGTAGDS 4157
The following BLAST results are available for this feature:
BLAST of TCONS_00046751 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TENX5.462e-2043.33Tenascin-X OS=Homo sapiens GN=TNXB PE=1 SV=4[more]
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