TCONS_00046752 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046752
Unique NameTCONS_00046752
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length526

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046752 ID=TCONS_00046752|Name=TCONS_00046752|organism=Clytia hemisphaerica|type=transcript|length=526bp
aaaagacACAAATCCACCAAGGAGGTTATACAGTTCATTCAAAGTTCTTC
ACTAGTCCATTAAATAGAAAATATACAAATGATaaagcatttatttttct
ttggtccTTACACGAAGAAAGATGACGAATAATTTTCTGTTGATGATGTT
GGTGACGATGTTACCAGAACTGAATGCAACTAGCACTGACCATGATGTTA
AAATGTTGAAATTGCAATTCAAAGCTTTAATGAAATTGCAAACAGATACA
AGTCAGAAATTAACAAACACTAACCAAGTGTTAAGTCAAAAGTTAAGTCA
AACAAGACAAGAGCTAAATGCTCTAAAATTGAAAGATCAAACTCTCAATG
GATACTGCAAGATCAAATCCAATCAATGTGGTTCATGCTACTGCGTCCAA
GATTTCAACattccttcaaaattttattgtgATTGTCGAGCGAAACCGGC
GAGAAGAGATTGCAAAGAGCATTACATGCACGGCGAACGGACCAATGGGT
TGTACAGAATCAATATCAATACATAT
Run BLAST on NCBI

protein sequence of TCONS_00046752-protein

>TCONS_00046752-protein ID=TCONS_00046752-protein|Name=TCONS_00046752-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
MTNNFLLMMLVTMLPELNATSTDHDVKMLKLQFKALMKLQTDTSQKLTNT
NQVLSQKLSQTRQELNALKLKDQTLNGYCKIKSNQCGSCYCVQDFNIPSK
FYCDCRAKPARRDCKEHYMHGERTNGLYRININTY
Run BLAST on NCBI

transcript from alignment at scaffold_116:667399..667924

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046752 ID=TCONS_00046752|Name=TCONS_00046752|organism=Clytia hemisphaerica|type=transcript|length=526bp|location=Sequence derived from alignment at scaffold_116:667399..667924 (Clytia hemisphaerica)
ATATGTATTGATATTGATTCTGTACAACCCATTGGTCCGTTCGCCGTGCA
TGTAATGCTCTTTGCAATCTCTTCTCGCCGGTTTCGCTCGACAATcacaa
taaaattttgaaggaatGTTGAAATCTTGGACGCAGTAGCATGAACCACA
TTGATTGGATTTGATCTTGCAGTATCCATTGAGAGTTTGATCTTTCAATT
TTAGAGCATTTAGCTCTTGTCTTGTTTGACTTAACTTTTGACTTAACACT
TGGTTAGTGTTTGTTAATTTCTGACTTGTATCTGTTTGCAATTTCATTAA
AGCTTTGAATTGCAATTTCAACATTTTAACATCATGGTCAGTGCTAGTTG
CATTCAGTTCTGGTAACATCGTCACCAACATCATCAACAGAAAATTATTC
GTCATCTTTCTTCGTGTAAggaccaaagaaaaataaatgctttATCATTT
GTATATTTTCTATTTAATGGACTAGTGAAGAACTTTGAATGAACTGTATA
ACCTCCTTGGTGGATTTGTgtctttt

Coding sequence (CDS) from alignment at scaffold_116:667399..667924

>TCONS_00046752 ID=TCONS_00046752|Name=TCONS_00046752|organism=Clytia hemisphaerica|type=CDS|length=405bp|location=Sequence derived from alignment at scaffold_116:667399..667924 (Clytia hemisphaerica)
ATATGTATTGATATTGATTCTGTACAACCCATTGGTCCGTTCGCCGTGCA
TGTAATGCTCTTTGCAATCTCTTCTCGCCGGTTTCGCTCGACAATcacaa
taaaattttgaaggaatGTTGAAATCTTGGACGCAGTAGCATGAACCACA
TTGATTGGATTTGATCTTGCAGTATCCATTGAGAGTTTGATCTTTCAATT
TTAGAGCATTTAGCTCTTGTCTTGTTTGACTTAACTTTTGACTTAACACT
TGGTTAGTGTTTGTTAATTTCTGACTTGTATCTGTTTGCAATTTCATTAA
AGCTTTGAATTGCAATTTCAACATTTTAACATCATGGTCAGTGCTAGTTG
CATTCAGTTCTGGTAACATCGTCACCAACATCATCAACAGAAAATTATTC
GTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029837XLOC_029837Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046752-exon-scaffold_116-1491911889:667399..667924TCONS_00046752-exon-scaffold_116-1491911889:667399..667924Clytia hemisphaericaexon
TCONS_00046752-exon-scaffold_116-1510915933:667399..667924TCONS_00046752-exon-scaffold_116-1510915933:667399..667924Clytia hemisphaericaexon
TCONS_00046752-exon-scaffold_116-1575043694:667399..667924TCONS_00046752-exon-scaffold_116-1575043694:667399..667924Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046752-proteinTCONS_00046752-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_116supercontigscaffold_116:667399..667924 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.111917	0	0.506873	0.371922	0.150927	0	0.287774	0.269411	0	0.116819	0.680323	0.298145	0.521028	1.00489	14.2988	20.3075	3.36063	1.72227	0	0.746964	1.29849	1.26672	11.8423	9.25703	1.50356	3.00273	0.460382	1.31022	57.6297	60.6877
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046752 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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