TCONS_00046757 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046757
Unique NameTCONS_00046757
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length468

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046757 ID=TCONS_00046757|Name=TCONS_00046757|organism=Clytia hemisphaerica|type=transcript|length=468bp
gtgcgaaagagaaatcatgtattttttaatacgctgttcattgataactc
aaatcaaatgactttggtagtttggtgaaatggtggcagaatcgcagtcc
catgttttgtcagatagtcccaagttaaaACAGTTGACGGTATTGGATag
atgagatttttttttccaatgggatatttttttccaattgaTGCTGGACT
ACAATAAATTTCGTCAATTTGACAAAGGAAATCATGACCATGTCATCTTT
AAAGAGTGATTCAGTCTAGGCttcctttcactttatcgatattaagCGCA
AGGCAGATTGTGCTATAATATTTTGGTTTTGCATTCGATTTCAATCAAAG
GTCTTAGTAACAGGATGCGTATAGAGTTAATTAATTCCTTGTTGACGCAC
CGGACTTTACAAACACCGGTTGAGCTAAAAGAGGGGGGTGCCATTTTTAA
AGAGGGCTTGATACAAAA
Run BLAST on NCBI

transcript from alignment at scaffold_116:837557..838024

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046757 ID=TCONS_00046757|Name=TCONS_00046757|organism=Clytia hemisphaerica|type=transcript|length=468bp|location=Sequence derived from alignment at scaffold_116:837557..838024 (Clytia hemisphaerica)
TTTTGTATCAAGCCCTCTTTAAAAATGGCACCCCCCTCTTTTAGCTCAAC
CGGTGTTTGTAAAGTCCGGTGCGTCAACAAGGAATTAATTAACTCTATAC
GCATCCTGTTACTAAGACCTTTGATTGAAATCGAATGCAAAACCAAAATA
TTATAGCACAATCTGCCTTGCGcttaatatcgataaagtgaaaggaaGCC
TAGACTGAATCACTCTTTAAAGATGACATGGTCATGATTTCCTTTGTCAA
ATTGACGAAATTTATTGTAGTCCAGCAtcaattggaaaaaaatatcccat
tggaaaaaaaaatctcatctATCCAATACCGTCAACTGTtttaacttggg
actatctgacaaaacatgggactgcgattctgccaccatttcaccaaact
accaaagtcatttgatttgagttatcaatgaacagcgtattaaaaaatac
atgatttctctttcgcac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029842XLOC_029842Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046757-exon-scaffold_116-1491911889:837557..838024TCONS_00046757-exon-scaffold_116-1491911889:837557..838024Clytia hemisphaericaexon
TCONS_00046757-exon-scaffold_116-1510915933:837557..838024TCONS_00046757-exon-scaffold_116-1510915933:837557..838024Clytia hemisphaericaexon
TCONS_00046757-exon-scaffold_116-1575043694:837557..838024TCONS_00046757-exon-scaffold_116-1575043694:837557..838024Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_116supercontigscaffold_116:837557..838024 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.410939	0.267154	0.775477	2.12431	0	0	0	0.165021	0.34629	0	0.277866	0.182455	0	0	0	0	0	0.105398	0	0	0.264879	0.387597	0	0	0	0.131256	0	0	0	0.154901
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046757 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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