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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046760 ID=TCONS_00046760|Name=TCONS_00046760|organism=Clytia hemisphaerica|type=transcript|length=3199bpRun BLAST on NCBI transcript from alignment at scaffold_117:2028..26404+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00046760 ID=TCONS_00046760|Name=TCONS_00046760|organism=Clytia hemisphaerica|type=transcript|length=24377bp|location=Sequence derived from alignment at scaffold_117:2028..26404+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00046760 vs. Swiss-Prot (Human)
Match: VWA3A (von Willebrand factor A domain-containing protein 3A OS=Homo sapiens GN=VWA3A PE=2 SV=3) HSP 1 Score: 168.703 bits (426), Expect = 5.117e-51 Identity = 85/268 (31.72%), Postives = 147/268 (54.85%), Query Frame = 2
Query: 677 GVTYHVYSRLKELMTYELNVGKALRRYIKRLEWVLNDSHRVFGVLTEQNIVLVIDLSGSMVQHKANFDQQFTEMVWKQLYNTGKRFNVIVFSTDVTCWKNELMDTSKQNCKELIDWFYSLKCHGTTATMRALQTALSFEEVDAVYLLSDGKPDCSKSHVLRQIANTNMLTKKKIHSIAYHCANNEDSAFLKLLASQTKGRFHLFDGHHDIEEI---INTKLIQSNLPVSNTNESDDIRILLNEISNAKQYLQNCKTCLSSVENWQDGQ 1471
GV H+ +E+ Y ++ K LRRY++RL+W+L+ S R+FG + E + +++D SGSM + + ++W+QL FN++ F+ W++ L++T+ C E + W L+ G+T+ ++AL A SF +++ +YLL+DGKPD S S VL ++ K+H+I+ +C++ FL+ LAS T GR+H G + +I + I P E DD+RIL EI+ A+ +L ++ S ++ D +
Sbjct: 911 GVVRHIQWTPREMEVYIRHLEKVLRRYVQRLQWLLSGSRRLFGTVLESKVCILLDTSGSMGPYLQQVKTELVLLIWEQLRKCCDSFNLLSFAESFQSWQDTLVETTDAACHEAMQWVTHLQAQGSTSILQALLKAFSFHDLEGLYLLTDGKPDTSCSLVLNEVQKLREKRDVKVHTISLNCSDRAAVEFLRKLASFTGGRYHCPVGEDTLSKIHSLLTKGFINEKDPTLPPFEGDDLRILAQEITKARSFLWQAQSFRSQLQKKNDAE 1178 HSP 2 Score: 53.1434 bits (126), Expect = 5.117e-51 Identity = 38/114 (33.33%), Postives = 57/114 (50.00%), Query Frame = 3
Query: 324 WRPSTAHPTVS---ATPSSENGDTKKVNAKSKRNEATTDAHHIFYTEVGNNIGMVRLPRKSPQSSP----PSTISLPDNEEILSSKAWLRKYGLNNLNLLFEKVVSTGKCNHDR 644
WRP ++ +S A P+ E ++ K+K EA T +FYTE GN++G V +K PQ S+I LP + + SS+ W+ KYGL L L + + C H +
Sbjct: 783 WRPLSSRVGISPAAAQPTKEG--MMELRRKTKSREAETSLL-LFYTEKGNDVGSVY--KKYPQGRGLRRTSSSIDLPRKDTVCSSQEWVAKYGLKKLKLEISRCMGP-NCTHQK 890 HSP 3 Score: 87.8113 bits (216), Expect = 2.488e-17 Identity = 64/281 (22.78%), Postives = 124/281 (44.13%), Query Frame = 2
Query: 677 GVTYHVYSRLKELMTYELNVGKALRRYIKRLEWVLNDSHRVFGVLTEQNIVLVIDLSGSMVQHKANFDQQFTEMVWKQLYNTGKRFNVIVFSTDVTCWKNELMDTSKQNCKELIDWFYSLKCHGTTATMRALQTALS--FEEVD-----AVYLLSDGKPDCSKSHVLRQIA----------NTNML----TKKKIHSIAYHCANNEDSAFLKLLASQTKGRFHLFDGHHDIEEIINTKLIQSNLPVSNTNESDDIRILLNEISNAKQYLQNCKTCLSSVEN 1456
G +++ L Y+ + +A+R Y +R+EW+ S R++G + E+ +V+++D+S + + + ++ +QL N FN+I F + + W+ E++ S N + W +L+C G+ + AL+ A+ F++ D +YL + G PD + +A N + K A + ++ + +A K + GRFH F + ESDDI +++E+ A Y Q C ++S++N
Sbjct: 463 GTVKNIHVDPPFLYKYQQQLSRAMRMYERRIEWLSLASRRIWGTVCEKRVVVLLDISATNSMYIIHIQHSLRLLLEEQLSNKDC-FNLIAFGSTIESWRPEMVPVSHNNLQSAWRWALNLRCRGSRNVLSALRKAVEVDFKDKDKHQSQGIYLFTGGIPDQDMPTLSAYMAEACGGCDLQLNVCLFYVGEPKMDTTPPARYASHTDTAAAYKEVTRAAGGRFHWFGD-------------------TGIYESDDINSIMSEMEKALNYSQKCAFLMASLKN 723 The following BLAST results are available for this feature:
BLAST of TCONS_00046760 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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