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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046782 ID=TCONS_00046782|Name=TCONS_00046782|organism=Clytia hemisphaerica|type=transcript|length=354bp
GCAATAAAttataagataaaaaaaattaaaatcaatcgCAAGAAAATGCC
AGCCAAAAAAGAGAAATGTCAAAATGAAGATTGCTCGCGACTTTTGTCAG
TCAACCAAGTGGTTTGTCCTGGCTGCAATTTGAAACAGAAAAAGGAGAAG
AAGAAACTTGCAATGGAGTACACAGTACGAAAAAAAGAAATGTCAAAATG
AAGATTGTAGTGGACTTCTCTTTTGCAACCAGATGACGTGTCCTGAATGT
GGAGTGAAGCAGAAAAAGGTGGGCAAAACAGCCATAGATTATAAACCTCT
GGGGAAGACATGTCTTACGACGGAGAAGTACAGAATTCATGGCAGGCTTA
TGGG Run BLAST on NCBI transcript from alignment at scaffold_117:426508..428956+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046782 ID=TCONS_00046782|Name=TCONS_00046782|organism=Clytia hemisphaerica|type=transcript|length=2449bp|location=Sequence derived from alignment at scaffold_117:426508..428956+ (Clytia hemisphaerica)
GCAATAAAttataagataaaaaaaattaaaatcaatcgCAAGAAAATGCC
AGCCAAAAAAGAGGTATGCCTTTTGCTTATACTACATTATTTAATATTTA
TTATAATATTTGTTTTACACCTATTACAAAGTTAGAATGCCTTTACTTTT
TTAGAAAGCAAAGGTAAATCTTTTAAtgattcaaatatattttaaggTTA
CAGAATCAATAACTTCTGTATTTATCTTTAGAAATGTCAAAATGAAGATT
GCTCGCGACTTTTGTCAGTCAACCAAGTGGTTTGTCCTGGCTGCAATTTG
AAACAGAAAAAGGAGAAGAAGAAACTTGCAATGGAGTACACAGTACGAAA
AAAAGGTCAGATTATAGTAGATGTTGACGTGCATCCAAACTAGTACTTAT
TAAGGAGTAAAAATTCAAGTTTTTGAGAGATCGTGATGTTTTCATAACCA
TTTTGGGCCAATTTGTAATTTAAATCACAATCACGTGACTTCTAAACATG
ACCTGTAGATTGACTGTGATAAGAAGATAACTAAAAACCGTCCTAATTTG
CAACACTTTATTTCCTTTTCTTTCCATTTtatattcttttcaattttagt
tACAAAAACCACAATAagtttattctattttttttgattgattgtAATGC
CTACTGTTATTAATACTTTCTGCCATAGTAAAGTCAATATTATTTCATAA
GTTGTATTTAATTCCTTCACAACGGAGTCAGGACTGAACTTGAAACGCAA
AGCATAGAGCTGAATGACGAATTGGTTTAATAGcggactgactgactgac
tgattgactgactgactgactgactgactgactgactgactgactgactg
actgactgactgactgactgactgactgactgactgactgactgactgac
tgactggaGTAACCCCTGGAGtttcttattttattattttcatcgtGAAT
TGTGGTATTTATTGTTGAAAGTTAGgtctgatttcaaaatttttatatgt
TGTTTAACATACAGATTTCTTTCCGCCCGCCTTTTAGCCACTAGATGATT
TTTTATTACCAAATTGAACCATAATATAACATAATTTATCGTTTAAAGTT
TATTAGAATTGATTAGTTGATACAGGTTGATAAATTATTGGTTGCTTATA
TTTCTAGAAATGTCAAAATGAAGATTGTAGTGGACTTCTCTTTTGCAACC
AGATGACGTGTCCTGAATGTGGAGTGAAGCAGAAAAAGGTGGGCAAAACA
GCCATAGATTATAAACCTCTGGGGAAGACATGTCTTACGACGGAGAAGTA
CAGAATTCATGGCAGGGTAAGAAGAGACTTccgttttaatgaaattttaa
tgaaatcgGGCAACTTTCGTTTTAGCCTGTCCCACATTGAACCATGTAGA
TATTCAATAAAACCCTAAAGGCTGTACTCAACCTCGGTCCAGCCAAATCT
TCGACGgcttttttttggattttagtcCCCAATGAATGGATAAACTTAAA
AGATTCGTTTGACGTCAAATTGCAAAGACTGCAGGCACAGATTTACTTAG
ATACAGTATTTTATTTGGTAGGATTTTCTACCAAGGAACAATAGAAGTTC
ACGTAATTAACCCAATGAGAAGCGTCGCGATATTcacctttttttgcttg
gaaaagcttaacCCTATTAGGGGGTGTTTTACACCACGCACGTGCTTTTT
CCCTAATAACTCctggaaaactttttgaaacacccTGAAATTTTCTGACA
ATTGActaatataccgggtgcgccacaaaaaagtttctctctttgaaact
aattttctcgaaatctaaaaattttaaaagaaccattatttttccattgg
aaagaagaaagataaagttaagttttgatgggtcatttattgaattcgat
tcattagatcaaaagttatgctcaattgaataaaaaagtctttttcagaa
agtgctcgaaaacgttaaaaatcgaccccCCACTGCATCAGATTTCATGA
CTTTTATTTATAACATCGGTCATAAACTCCaactaaaatcctttaaaact
taaaaatcttaaaatgctCATAACTACTTGAATACTTatcaaaattaatt
aaattttcacaaattttcacaaattttaggTATCAAAAgaggaaattgaa
aaaaacaaaaaaaattcaaaaatatttagacgtcattttctatgacgtca
taaattttaatcatttttactCTTATTAAGCATTAATTTTAAGGATTAAA
ATCTTATGGTATATTAACAACcagcaaatatgttaaagagtATCCTTTTG
GCTTTCAGTTTCAATTGATCTTTTTGTAAGTGTCATTTTTTCCCTAAATC
GCCAACAGGTGCCAAATTGGTGATGAAATCTAAGGTTGTCCTTGACAATT
TAATAAAGACTAAAGAGTGGAATCGGTATTTATTTTCTTAGCTTATGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046782-exon-scaffold_117-1491911889:426508..426570 | TCONS_00046782-exon-scaffold_117-1491911889:426508..426570 | Clytia hemisphaerica | exon |
| TCONS_00046782-exon-scaffold_117-1510915933:426508..426570 | TCONS_00046782-exon-scaffold_117-1510915933:426508..426570 | Clytia hemisphaerica | exon |
| TCONS_00046782-exon-scaffold_117-1575043694:426508..426570 | TCONS_00046782-exon-scaffold_117-1575043694:426508..426570 | Clytia hemisphaerica | exon |
| TCONS_00046782-exon-scaffold_117-1491911889:426739..426862 | TCONS_00046782-exon-scaffold_117-1491911889:426739..426862 | Clytia hemisphaerica | exon |
| TCONS_00046782-exon-scaffold_117-1510915933:426739..426862 | TCONS_00046782-exon-scaffold_117-1510915933:426739..426862 | Clytia hemisphaerica | exon |
| TCONS_00046782-exon-scaffold_117-1575043694:426739..426862 | TCONS_00046782-exon-scaffold_117-1575043694:426739..426862 | Clytia hemisphaerica | exon |
| TCONS_00046782-exon-scaffold_117-1491911889:427665..427823 | TCONS_00046782-exon-scaffold_117-1491911889:427665..427823 | Clytia hemisphaerica | exon |
| TCONS_00046782-exon-scaffold_117-1510915933:427665..427823 | TCONS_00046782-exon-scaffold_117-1510915933:427665..427823 | Clytia hemisphaerica | exon |
| TCONS_00046782-exon-scaffold_117-1575043694:427665..427823 | TCONS_00046782-exon-scaffold_117-1575043694:427665..427823 | Clytia hemisphaerica | exon |
| TCONS_00046782-exon-scaffold_117-1491911889:428949..428956 | TCONS_00046782-exon-scaffold_117-1491911889:428949..428956 | Clytia hemisphaerica | exon |
| TCONS_00046782-exon-scaffold_117-1510915933:428949..428956 | TCONS_00046782-exon-scaffold_117-1510915933:428949..428956 | Clytia hemisphaerica | exon |
| TCONS_00046782-exon-scaffold_117-1575043694:428949..428956 | TCONS_00046782-exon-scaffold_117-1575043694:428949..428956 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_117 | supercontig | scaffold_117:426508..428956 + |
Blast
The following BLAST results are available for this feature:
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