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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046788 ID=TCONS_00046788|Name=TCONS_00046788|organism=Clytia hemisphaerica|type=transcript|length=2452bpRun BLAST on NCBI protein sequence of TCONS_00046788-protein >TCONS_00046788-protein ID=TCONS_00046788-protein|Name=TCONS_00046788-protein|organism=Clytia hemisphaerica|type=polypeptide|length=531bp MAALFGGNPFSSQVGQRIEQVTDSSRPSEDWTLILEICDIINENDEGPKDRun BLAST on NCBI transcript from alignment at scaffold_117:574596..593747+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00046788 ID=TCONS_00046788|Name=TCONS_00046788|organism=Clytia hemisphaerica|type=transcript|length=19152bp|location=Sequence derived from alignment at scaffold_117:574596..593747+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_117:574596..593747+ >TCONS_00046788 ID=TCONS_00046788|Name=TCONS_00046788|organism=Clytia hemisphaerica|type=CDS|length=23940bp|location=Sequence derived from alignment at scaffold_117:574596..593747+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00046788 vs. Swiss-Prot (Human)
Match: TM1L2 (TOM1-like protein 2 OS=Homo sapiens GN=TOM1L2 PE=1 SV=1) HSP 1 Score: 333.569 bits (854), Expect = 6.134e-104 Identity = 215/566 (37.99%), Postives = 308/566 (54.42%), Query Frame = 1
Query: 88 GNPFSSQVGQRIEQVTDSSRPSEDWTLILEICDIINENDEGPKDSIKAIRKRLS-NKNAKCIIYTLTVVEACVKNCGPRFHKQIASKDFLND-LTKLLGQKGQPSSMPQVVQEKILSLIQSWSDAFRNAPELQNIKQTYDSLKQQGVEFPAQDLDKLAPIFTPSRLSDGSANQQAPPPRTYAPAPSSRPQTAPASSAHHPQQQRMPPVGSPVHSPAN------------NGPINPSPEQMAKLRSELDIVEGNVRVLNEMLSELQPGKENSGDYELLVELNKTCREMQKRLVSLLDRIANEEVTGVLLRINDDLNNVFIRYDRYDRNR------KAVTGQVQPKPQDQV----------------STSPPQRSHAADTRTTGGSSLIDFSDLSSAQNQPNEQDDEFDMFAQSRGTTFADSRVSGSTYDDNREGVPSESFAGVMSAKGXXXXXXXXXXXXXXXXXXXXXXXXKWLQGTNLEELEKQDRAAREEALRQDQPPHPGVQTSETLSSTEFDKFLSERATTGAQNAQLQPKEPQPARQMTNVISG-----EHEKTEDAMFGL 1662
GNPFS+ VGQ +E+ TD S SEDWTL +EICDIINE +EGPKD+I+A++KRL+ N+N + ++ LTV+E CVKNCG RFH +A++DF++ L K++ K P P +VQ+K+L+LIQ+W+DAFR++P+L + Y+ LK++GVEFP DLD L+PI TP R S P+ PA++ Q Q+ GS P GPI + EQ+A+LRSELD+V GN +V++EML+E+ PG+E+S D ELL ELN+TCR MQ+R+V L+ R++NEEVT LL +NDDLNNVF+RY+R++R R A G + +D + +T+PP + G+ + + S Q P D FDMFAQ+RG + A+ R + TY+D ++ G+ SA + +G + + D E LR D G E ++S EFDKFL ER A+ A++ P P P + S + E++EDA+F L
Sbjct: 6 GNPFSTPVGQCLEKATDGSLQSEDWTLNMEICDIINETEEGPKDAIRALKKRLNGNRNYREVMLALTVLETCVKNCGHRFHILVANRDFIDSVLVKIISPKNNP---PTIVQDKVLALIQAWADAFRSSPDLTGVVHIYEELKRKGVEFPMADLDALSPIHTPQR---------------------SVPEVDPAATMPRSQSQQRTSAGSYSSPPPAPYSAPQAPALSVTGPITANSEQIARLRSELDVVRGNTKVMSEMLTEMVPGQEDSSDLELLQELNRTCRAMQQRIVELISRVSNEEVTEELLHVNDDLNNVFLRYERFERYRSGRSVQNASNGVLNEVTEDNLIDLGPGSPAVVSPMVGNTAPPSSLSSQLAGLDLGTESVSGTLSSLQQCNPR---DGFDMFAQTRGNSLAEQRKT-VTYED------PQAVGGLASALDNRKQSS---------------------EGIPVAQPSVMDDI--EVWLRTD---LKGDDLEEGVTSEEFDKFLEER----AKAAEMVPDLPSPPMEAPAPASNPSGRKKPERSEDALFAL 507 The following BLAST results are available for this feature:
BLAST of TCONS_00046788 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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