TCONS_00046796 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046796
Unique NameTCONS_00046796
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1623

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046796 ID=TCONS_00046796|Name=TCONS_00046796|organism=Clytia hemisphaerica|type=transcript|length=1623bp
ctttagaaagagcaacaaaaaagaaaatatacttTCTCAAGAAGATGAAC
AAAGACAATGGATCATCGAATCATTGAAAGAAACATACAAAGCTtgaaaa
atgataaagaaaCACCGGTGGAGTTTAAAAACTTGACTAACTCCACCGTC
AAGCTTTACTGGATTGATTTCGATGACAGTAAGCACAAACTATTTGCAGA
GTTAAATCCTATCCACCGTAAGGAGATTGGCTTGAAAAACAGGATTTTTA
ACAGTAATCCATGGCTTGCTAAAGAAGAAGATACAGGACGTAATGTCCTT
TTGAACGGCAGGAAATATTTCAATGCACCGCGTTCAAATATTTGGATGAA
ATGGGCGAACGGATGGATGAGTGAGCGTTGGAATCAGGTGATCTCAAAAG
ATAAACAAGAAGAAATGAAGAAGAACCCGAAACCCGATCATGAAGACCGG
GATACAAATCGGGAGAATTATTTCGAAGTTTTGATTTTACCAACAGgaAG
TCGATCCTTGAGAGAGATCGCGTTACTGAAAGTATGCACGCTTTACAAGA
GCAATTCATCTGAACTCGAGTGTTTACCGAAAACCTTGAAATACGAGACA
GAAACATgccgagaaaaatatttttggacggAAGCTTCAGCGAAAGAAAA
AACGGAGGCGGAAAATTCAGACAATCGTCCCGAACAAAACACGTGAACAC
CATGTGatgttttttaacatttttgtatTTATTAATGAGCAAGGTATTAG
TCTACTGATGCTGTCATTAAGTTACTGTTCATGTATGTGCATTTTCCTGT
GACGGAGACGGTAGTCTTTCAATTTGACTACATCCTAACTGACTGAGAAC
Gaaggtaaatcagcacttttaccgtcctcgactttgcgggtcagaactga
gGTTTTATCCAAATCGCTTCAGATGCTTTATCGTCCAAAAGTGCAATTCC
ATAAACTCGCTTTTCTTATGTTATATAGACCCCTGTAATGTCTTCTGGCA
TTTATGTCACTTTTATATAACAGCTGATTTGCTGTAAGTTGCAATGATCG
GataaaaacaacagaaaaactACCTAATTTCGTCAGTGTCGTGGATATTG
TGGTTTTATAAGGTGTGTCTTGTCTGAAATAAGGCAGCCGTTGAACCTTG
AAGGAAGTAAGAAAGTATTGCTGTTCCAGTCAGAAATGTTCATCATTCTC
AAATATTTCCTATTAGTAGATTCATgtaaaaagtcacgaaaaaaacgTCG
AATAAAGCACTAATTGGCTGAATATTGCACgcataaacatatttttttta
aagtgtccagagtatgaggtaatctttaCATGCCACAGCCAAGATTCGAA
ATTCATAACGCAACCCCATCTCAGTGCCGATGGTCCGGGATGGGGCATTC
Ggcccttaaccctatttttatcagggggggggtgttttccaccaggctgg
cactattttgctaatagctcactgaaatttttttttaacactctgaaagt
ttttgacttttaatataatcctattagcagcatgtatacacaattttaca
attatacaccgaccagatcaggttttatgacttttttgtgcaggcgtatc
ataaaatccagctaaaaccctgt
Run BLAST on NCBI

protein sequence of TCONS_00046796-protein

>TCONS_00046796-protein ID=TCONS_00046796-protein|Name=TCONS_00046796-protein|organism=Clytia hemisphaerica|type=polypeptide|length=212bp
MDHRIIERNIQSLKNDKETPVEFKNLTNSTVKLYWIDFDDSKHKLFAELN
PIHRKEIGLKNRIFNSNPWLAKEEDTGRNVLLNGRKYFNAPRSNIWMKWA
NGWMSERWNQVISKDKQEEMKKNPKPDHEDRDTNRENYFEVLILPTGSRS
LREIALLKVCTLYKSNSSELECLPKTLKYETETCREKYFWTEASAKEKTE
AENSDNRPEQNT
Run BLAST on NCBI

transcript from alignment at scaffold_117:80951..84024-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046796 ID=TCONS_00046796|Name=TCONS_00046796|organism=Clytia hemisphaerica|type=transcript|length=3074bp|location=Sequence derived from alignment at scaffold_117:80951..84024- (Clytia hemisphaerica)
CTTTAGAAAGAGCAACAAAAAAGAAAATATACTTTCTCAAGAAGATGAAC
AAAGACAATGGATCATCGAATCATTGAAAGAAACATACAAAGCTTGAAAA
ATGATAAAGAAACACCGGTGGAGTTTAAAAACTTGACTAACTCCACCGTC
AAGCTTTACTGGATTGATTTCGATGACAGTAAGCACAAACTATTTGCAGA
GTTAAATCCTATCCACCGTAAGGAGATTGGCTTGAAAAACAGGATTTTTA
ACAGTAATCCATGGCTTGCTAAAGAAGAAGATACAGGACGTAATGTCCTT
TTGAACGGCAGGAAATATTTCAATGCACCGCGTTCAAATATTTGGATGAA
ATGGGCGAACGGATGGATGAGTGAGCGTTGGAATCAGGTGATCTCAAAAG
ATAAACAAGAAGAAATGAAGAAGAACCCGAAACCCGATCATGAAGACCGG
GATACAAATCGGGAGAATTATTTCGAAGTTTTGATTTTACCAACAGGTGA
GTCTAGAAGTGAAGTAAATATTTAATCAAATTCTTGGAGCAGATGACAAA
TTGCCCGAGGGGTAAATCACTAAAAATTAGGTGTACGAGATTTTGATTTC
TTTTTGATTTTTGATTTCTTTTTGATTTCTTTTTGATTTTTGATTTCTTT
TTGATTTTTGATTTCTTTTTGATTTCTTTTTGATTTTTGATTTTTTTTTG
ATTTCTTTTTGATTTTTGATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATTTCTTTTTTATTTCTG
ATTTCTTTTTGATTTCTTTTTGATTTTTGATTTTTTTTTGATTTCTTTTT
GATTTTTGATTTCTTTTTGATTTCCTTTTGATTTCTGATTTCTTTTTGAT
TTCTTTTTTATTTCTGATTTCTTTTTGATTTCTTTTTGATTTTTGATTTT
TTTTTGATTTTTTTTTGATTTTTGATTTTTTTTTTTTTATTTTCATTTTG
ATTTCTTTTTGATTTATTTTTGATTTCTTTTTGATTTCTGATTTCTTTTT
GATTTTTTTTGATTTTTGATTTCTTTTTGATTTCTTTTTGATTTCTGATT
TCTTTTTGATTTCTTTTTGATTTTTGATTTCTTTTTGATTTCCTTTTGAT
TTCTGATTTCTTTTTGATTTCTTTTTGATTTCTGACTTCTTTTTTATTTC
TTTTTGATTTTTGATTTTTTTTTTGATTTTTTTTTGATTTTTTATTTTTT
TTTTTGATTTTCATTTTGATTTTCTTTTTGATTTCTTTTTGATTTCTTTT
TGATTTCTGATTTCTTTTTGATTTCTTTTTGATTTTTGATTTCTTTTTGA
TTTCTTTTTGATTTTTGATTTCTTTTTGATTTCTTTTTGATTTTTCAAAA
AGGTGTACGTGATTTTTTTTCAGTGATTTACCCCTCGAAATTGCCTTATT
GCTGTTTGCGCCCGATTTAGGCAGTCGTCCTTACAATGACCTGCTTAGGT
GTGACGGATAAGACTGAATTCGTGCCTCGTTCACAAAGTATATAAAGCTG
AGAATAGATTATCATTATTTTTCGCCTATAACACAAAAAGGGCGCAGTAG
TTGAGTGGTTATCAGTCTTGACTTCCGAACAGAAGGTCGGGGTTCTATTT
CCACTCGGTGCTGGTTGAAAACATCGTACCTCTTAAACAAAGTGTGTTGA
TATGTAGTAATTCATAGATTAATAGTTAAAGAATTGCCAGGGTCTAAGTG
AGATGGTCACCTTGGTGATTATTTCAAGGCGAGACGGCAATACTTGATTA
CTGATATTGTGATGTTTCTTTATGAAGAGGTCTTATATGACAGAAATGTC
TTTGAAATAACCGCTGATCTTTTTCTTCCGTTATTTTTTTCTTATAGGAA
GTCGATCCTTGAGAGAGATCGCGTTACTGAAAGTATGCACGCTTTACAAG
AGCAATTCATCTGAACTCGAGTGTTTACCGAAAACCTTGAAATACGAGAC
AGAAACATGCCGAGAAAAATATTTTTGGACGGAAGCTTCAGCGAAAGAAA
AAACGGAGGCGGAAAATTCAGACAATCGTCCCGAACAAAACACGTGAACA
CCATGTGATGTTTTTTAACATTTTTGTATTTATTAATGAGCAAGGTATTA
GTCTACTGATGCTGTCATTAAGTTACTGTTCATGTATGTGCATTTTCCTG
TGACGGAGACGGTAGTCTTTCAATTTGACTACATCCTAACTGACTGAGAA
CGAAGGTAAATCAGCACTTTTACCGTCCTCGACTTTGCGGGTCAGAACTG
AGGTTTTATCCAAATCGCTTCAGATGCTTTATCGTCCAAAAGTGCAATTC
CATAAACTCGCTTTTCTTATGTTATATAGACCCCTGTAATGTCTTCTGGC
ATTTATGTCACTTTTATATAACAGCTGATTTGCTGTAAGTTGCAATGATC
GGATAAAAACAACAGAAAAACTACCTAATTTCGTCAGTGTCGTGGATATT
GTGGTTTTATAAGGTGTGTCTTGTCTGAAATAAGGCAGCCGTTGAACCTT
GAAGGAAGTAAGAAAGTATTGCTGTTCCAGTCAGAAATGTTCATCATTCT
CAAATATTTCCTATTAGTAGATTCATGTAAAAAGTCACGAAAAAAACGTC
GAATAAAGCACTAATTGGCTGAATATTGCACGCATAAACATATTTTTTTT
AAAGTGTCCAGAGTATGAGGTAATCTTTACATGCCACAGCCAAGATTCGA
AATTCATAACGCAACCCCATCTCAGTGCCGATGGTCCGGGATGGGGCATT
CGGCCCTTAACCCTATTTTTATCAGGGGGGGGGTGTTTTCCACCAGGCTG
GCACTATTTTGCTAATAGCTCACTGAAATTTTTTTTTAACACTCTGAAAG
TTTTTGACTTTTAATATAATCCTATTAGCAGCATGTATACACAATTTTAC
AATTATACACCGACCAGATCAGGTTTTATGACTTTTTTGTGCAGGCGTAT
CATAAAATCCAGCTAAAACCCTGT

Coding sequence (CDS) from alignment at scaffold_117:80951..84024-

>TCONS_00046796 ID=TCONS_00046796|Name=TCONS_00046796|organism=Clytia hemisphaerica|type=CDS|length=1278bp|location=Sequence derived from alignment at scaffold_117:80951..84024- (Clytia hemisphaerica)
GAAGTCGATCCTTGAGAGAGATCGCGTTACTGAAAGTATGCACGCTTTAC
AAGAGCAATTCATCTGAACTCGAGTGTTTACCGAAAACCTTGAAATACGA
GACAGAAACATGCCGAGAAAAATATTTTTGGACGGAAGCTTCAGCGAAAG
AAAAAACGGAGGCGGAAAATTCAGACAATCGTCCCGAACAAAACACGTGA
ATGGATCATCGAATCATTGAAAGAAACATACAAAGCTTGAAAAATGATAA
AGAAACACCGGTGGAGTTTAAAAACTTGACTAACTCCACCGTCAAGCTTT
ACTGGATTGATTTCGATGACAGTAAGCACAAACTATTTGCAGAGTTAAAT
CCTATCCACCGTAAGGAGATTGGCTTGAAAAACAGGATTTTTAACAGTAA
TCCATGGCTTGCTAAAGAAGAAGATACAGGACGTAATGTCCTTTTGAACG
GCAGGAAATATTTCAATGCACCGCGTTCAAATATTTGGATGAAATGGGCG
AACGGATGGATGAGTGAGCGTTGGAATCAGGTGATCTCAAAAGATAAACA
AGAAGAAATGAAGAAGAACCCGAAACCCGATCATGAAGACCGGGATACAA
ATCGGGAGAATTATTTCGAAGTTTTGATTTTACCAACAGGAAGTCGATCC
TTGAGAGAGATCGCGTTACTGAAAGTATGCACGCTTTACAAGAGCAATTC
ATCTGAACTCGAGTGTTTACCGAAAACCTTGAAATACGAGACAGAAACAT
GCCGAGAAAAATATTTTTGGACGGAAGCTTCAGCGAAAGAAAAAACGGAG
GCGGAAAATTCAGACAATCGTCCCGAACAAAACACGTGAATGGATCATCG
AATCATTGAAAGAAACATACAAAGCTTGAAAAATGATAAAGAAACACCGG
TGGAGTTTAAAAACTTGACTAACTCCACCGTCAAGCTTTACTGGATTGAT
TTCGATGACAGTAAGCACAAACTATTTGCAGAGTTAAATCCTATCCACCG
TAAGGAGATTGGCTTGAAAAACAGGATTTTTAACAGTAATCCATGGCTTG
CTAAAGAAGAAGATACAGGACGTAATGTCCTTTTGAACGGCAGGAAATAT
TTCAATGCACCGCGTTCAAATATTTGGATGAAATGGGCGAACGGATGGAT
GAGTGAGCGTTGGAATCAGGTGATCTCAAAAGATAAACAAGAAGAAATGA
AGAAGAACCCGAAACCCGATCATGAAGACCGGGATACAAATCGGGAGAAT
TATTTCGAAGTTTTGATTTTACCAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029858XLOC_029858Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046796-proteinTCONS_00046796-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046796-exon-scaffold_117-1575043694:83529..84024TCONS_00046796-exon-scaffold_117-1575043694:83529..84024Clytia hemisphaericaexon
TCONS_00046796-exon-scaffold_117-1575043694:80951..82077TCONS_00046796-exon-scaffold_117-1575043694:80951..82077Clytia hemisphaericaexon
TCONS_00046796-exon-scaffold_117-1510915933:83529..84024TCONS_00046796-exon-scaffold_117-1510915933:83529..84024Clytia hemisphaericaexon
TCONS_00046796-exon-scaffold_117-1510915933:80951..82077TCONS_00046796-exon-scaffold_117-1510915933:80951..82077Clytia hemisphaericaexon
TCONS_00046796-exon-scaffold_117-1491911889:83529..84024TCONS_00046796-exon-scaffold_117-1491911889:83529..84024Clytia hemisphaericaexon
TCONS_00046796-exon-scaffold_117-1491911889:80951..82077TCONS_00046796-exon-scaffold_117-1491911889:80951..82077Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_117supercontigscaffold_117:80951..84024 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.71207	1.78756	2.48177	2.84387	14.4364	13.022	52.395	55.0624	40.0004	34.722	20.101	27.5015	19.6852	17.2853	28.4769	25.0266	17.7027	19.7824	19.8166	19.1386	31.2283	27.4948	9.48521	11.7825	20.3184	17.8557	8.93194	10.7308	5.50642	3.72448
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR024053VHL_beta_dom
IPR022772VHL_tumour_suppress_b/a_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046796 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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