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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046798 ID=TCONS_00046798|Name=TCONS_00046798|organism=Clytia hemisphaerica|type=transcript|length=3109bpRun BLAST on NCBI protein sequence of TCONS_00046798-protein >TCONS_00046798-protein ID=TCONS_00046798-protein|Name=TCONS_00046798-protein|organism=Clytia hemisphaerica|type=polypeptide|length=900bp MKMPSIHSVIILLVFGTLALANHQFKTQLVLPDQLLFVSTLNGTLYAINKRun BLAST on NCBI transcript from alignment at scaffold_117:93684..121322- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00046798 ID=TCONS_00046798|Name=TCONS_00046798|organism=Clytia hemisphaerica|type=transcript|length=27639bp|location=Sequence derived from alignment at scaffold_117:93684..121322- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_117:93684..121322- >TCONS_00046798 ID=TCONS_00046798|Name=TCONS_00046798|organism=Clytia hemisphaerica|type=CDS|length=62169bp|location=Sequence derived from alignment at scaffold_117:93684..121322- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00046798 vs. Swiss-Prot (Human)
Match: ERN2 (Serine/threonine-protein kinase/endoribonuclease IRE2 OS=Homo sapiens GN=ERN2 PE=1 SV=4) HSP 1 Score: 666.766 bits (1719), Expect = 0.000e+0 Identity = 385/906 (42.49%), Postives = 528/906 (58.28%), Query Frame = 3
Query: 102 GTLALANHQFKTQLVLPDQLLFVSTLNGTLYAINKQNGKVKWKLNEDPAFTAPLRVGGGATFLTNPLDGGLYIFLGSHVQDSLRKLPFSIPELVHASPCRSSEGTLYVGRKQDVWHAIDPETGIKRHQLTMDGIETMCPPMNQENAPFYIGRTEYTVSMFESTTGNKKWNVTFYEYSARDITEDTPYDLVHFISSSSGRVVTIDQLTGEITWELEVASPIVGMYEWLPDGLQKIPFTTVAEQTLDTI------ISSAVAGENNSRFVGKGKELVLKPTLFIGKHKGGLYAMPSMVDEKANIVDPKMLLIS---GPNKQE---------------------GSTGQRSVLILEGHHSVPKKLKSTLTSGFLIGHDKESKTFDKTYPNAP------------KIKNGK--KQNRSITKILGSIKDHQNVVYMFFASVGIPLFIIFLCYFERK--LPAGQTSRLSLPSFTHNSQ--MSTKSNHSTHSVGSLNGSINESMYPVEDEEG--MVHVGKIIFDPSDILGRGCEGTTVFKGKFDERDVAVKRILPECFSFADREVELLRESDEHPNVIRYFCTEEDKQFRYIALELCQATLQDYVQEPGTYQITLEPTQVLYQALSGLFHLHSLNIVHRDIKPHNVLLSYPNPYGEVKAMISDFGLCKKLAIGRHSFSSRSGI-GTEGWIAPEMLD--KKMKTTRACDIFSYGCVFYYVLSGGLHPFGDSFRRQGNIIVGQYSLDKL-NYLDNEYEARDLLRQMLHVNPTERPKASTILKHPFFWNKAKQLGFFQDVSDRIEKEKEDADILKALQKNSIAVVRGDWKMHIGAELQEDLRRFRTYQGVQVRDLLRAMRNKKHHYRELPEKLRESLGTIPDQYVEYFTKRFPRLLMHTYHSLKPFCQNEPPFRIYY 2657
GTL+ H + P+ LL VSTL+G+L+A++KQ G +KW L +DP P+ V A FL++P DG LYI LG+ Q L KLPF+IPELVHASPCRSS+G Y GRKQD W +DPE+G + LT +G T YIGRT+YTV+M + +WN T+ YSA + + H S G ++T+D +G + W ++ P++G+Y W DGL+++P T+A TL + I +G ++ + + L TL++GK + G Y ++V +V P+ L ++ GP E GS S +L GHH +P L +T+ ++T AP K+ + + + ++ LG Q+++ +V + +I+F+ ++ + Q + L+ F H SQ S S S S L S ++ P++D E + VGKI F+P D+LGRG GT VF+G+F+ R VAVKR+L ECF REV+LL+ESD HPNV+RYFCTE QF YIALELC+A+LQ+YV+ P + LEP VL Q +SGL HLHSL+IVHRD+KP N+L++ P+ G + ++SDFGLCKKL GR SFS SGI GTEGW+APE+L T A DIFS GCVFYYVLSGG HPFGDS RQ NI+ G L L + ++ ARDL+ ML P RP A +L HPFFW++AKQL FFQDVSD +EKE E +++AL+ AVVR +W HI LQ DLR+FR+Y+G VRDLLRA+RNKKHHYRELP ++R++LG +PD +V+YFT RFPRLL+HT+ +++ C +E F YY
Sbjct: 26 GTLSPQVHTLR-----PENLLLVSTLDGSLHALSKQTGDLKWTLRDDPVIEGPMYVTEMA-FLSDPADGSLYI-LGTQKQQGLMKLPFTIPELVHASPCRSSDGVFYTGRKQDAWFVVDPESGETQMTLTTEGPST---------PRLYIGRTQYTVTMHDPRAPALRWNTTYRRYSAPPMDGSPGKYMSHLASCGMGLLLTVDPGSGTVLWTQDLGVPVMGVYTWHQDGLRQLPHLTLARDTLHFLALRWGHIRLPASGPRDTATLFSTLDTQLLMTLYVGKDETGFYVSKALVHTGVALV-PRGLTLAPADGPTTDEVTLQVSGEREGSPSTAVRYPSGSVALPSQWLLIGHHELPPVLHTTMLRVHPTLGSGTAETRPPENTQAPAFFLELLSLSREKLWDSELHPEEKTPDSYLG--LGPQDLLAASLTAVLLGGWILFVMRQQQPQVVEKQQETPLAPADFAHISQDAQSLHSGASRRSQKRLQ-SPSKQAQPLDDPEAEQLTVVGKISFNPKDVLGRGAGGTFVFRGQFEGRAVAVKRLLRECFGLVRREVQLLQESDRHPNVLRYFCTERGPQFHYIALELCRASLQEYVENPDLDRGGLEPEVVLQQLMSGLAHLHSLHIVHRDLKPGNILITGPDSQGLGRVVLSDFGLCKKLPAGRCSFSLHSGIPGTEGWMAPELLQLLPPDSPTSAVDIFSAGCVFYYVLSGGSHPFGDSLYRQANILTGAPCLAHLEEEVHDKVVARDLVGAMLSPLPQPRPSAPQVLAHPFFWSRAKQLQFFQDVSDWLEKESEQEPLVRALEAGGCAVVRDNWHEHISMPLQTDLRKFRSYKGTSVRDLLRAVRNKKHHYRELPVEVRQALGQVPDGFVQYFTNRFPRLLLHTHRAMR-SCASESLFLPYY 910 The following BLAST results are available for this feature:
BLAST of TCONS_00046798 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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