TCONS_00046802 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046802
Unique NameTCONS_00046802
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length969

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046802 ID=TCONS_00046802|Name=TCONS_00046802|organism=Clytia hemisphaerica|type=transcript|length=969bp
CTGACTgtgaaagaaaattgatttttatcgttttttgtaATGCTGATATT
TTGGCAGTCCCTATTAAGAAAGAATAGTTTCCCAGAGGTTTTCGTgcatg
cgtgaatgcgtgacaATCTCCATTTTTATTACCAGAATGTCGCAATTTTT
TTGAAGGTATGCATAGAATATCTCttatttaccatttttttctcagtttt
ctTGAAGAACGGGGTCTGCATGAATCtcaagaaaaaatttgtaaatgCGT
GAATTCAAGATTCATTCAGCAGATgcgaaaatttaaaattcttaaTTTCT
ACCCCGATTTGACTAAGTAAAAATAATGACATTCGACTTGGCGGCAACCT
TTGTTTTCTTGATCCTTCTGGTTGGGTCATCAACATCAACAATTGAAAAA
GATTCATTGGAGGGTCCAAATGCTGCTTGTGATTGCAACTATCACCCAGG
TGGTTGTACAATCAGTAAGATAGCTCCTGCAAATTACGCTTGTAAATGTC
AGTATAAAGGCGCTTGGACATGTAATGGTTATGTTGTTGAATGCCGCGAA
CCTAACGATGATAAATGCAGACAACCTGATAATTCATTTAGATCGTGTAT
GCAAGGCGATGGAGATTGTCAAGgCTACAAAGAAGGAAATTGTGATTGCG
ATTACCACCCAGGAGGGTGTAAGATTTCATCACCGCCTCCCGCCTATGCT
GCTTGTAGGTGCAATTACAAAGGTGCCTGGACATGTGGTGGACATCTTGT
GAGATGTCCCGTCTGGAACAACCATTTTTGTTTGAATCCCGACTTTTCAA
AAGCCACGTGTCAATTTGGCGGTGGTGATTGTGGAGGGTATTGAAGCCTC
ATAatttatttctcattttataagaagaaataaACCGAAAAAGAATCTCT
TTCTAATTTAGTAATATTTCTTATAACATCTTGCAgaaataagtttcaat
tattcTACTAAAAGAAGAC
Run BLAST on NCBI

protein sequence of TCONS_00046802-protein

>TCONS_00046802-protein ID=TCONS_00046802-protein|Name=TCONS_00046802-protein|organism=Clytia hemisphaerica|type=polypeptide|length=172bp
MTFDLAATFVFLILLVGSSTSTIEKDSLEGPNAACDCNYHPGGCTISKIA
PANYACKCQYKGAWTCNGYVVECREPNDDKCRQPDNSFRSCMQGDGDCQG
YKEGNCDCDYHPGGCKISSPPPAYAACRCNYKGAWTCGGHLVRCPVWNNH
FCLNPDFSKATCQFGGGDCGGY
Run BLAST on NCBI

transcript from alignment at scaffold_117:379265..382138-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046802 ID=TCONS_00046802|Name=TCONS_00046802|organism=Clytia hemisphaerica|type=transcript|length=2874bp|location=Sequence derived from alignment at scaffold_117:379265..382138- (Clytia hemisphaerica)
CTGACTGTGAAAGAAAATTGATTTTTATCGTTTTTTGTAATGCTGATATT
TTGGCAGTCCCTATTAAGAAAGAATAGTTTCCCAGAGGTTTTCGTGCATG
CGTGAATGCGTGACAATCTCCATTTTTATTACCAGAATGTCGCAATTTTT
TTGAAGGTATGCATAGAATATCTCTTATTTACCATTTTTTTCTCAGTTTT
CTTGAAGAACGGGGTCTGCATGAATCTCAAGAAAAAATTTGTAAATGCGT
GAATTCAAGATTCATTCAGCAGATGCGAAAATTTAAAATTCTTAATTTCT
ACCCCGATTTGACTAAGTAAAAATAATGACATTCGACTTGGCGGCAACCT
TTGTTTTCTTGATCCTTCTGGTTGGGTCATCAACATCAACAATTGAAAAA
GGCAAGTCAAGTTTCATGGGATAATATTCATATGGTTCGAATAGTTTTCG
AACACTTTTATGTACGAAGATATAATTTTATCAAAGCATTCTTCAGGTAG
ATTTTTCAATGTATAGAAAAAACACAGAGGGTTCCTGTAGCAACCGCAAT
CGCAATTTTACAGACCGCCAGGATTGTATTATTGGTGTAACATGGAACTT
CCTACAATATTTTGTGTTTCTGTGTGGATTTGCAGATGTCTAAATAAACA
AATCAACAATCAATTTTGGTTAAAAATGAATGTGATTCGTTTAATCATAA
ATAGTTACAGTCCTTCAAATTCGGTCAAAGTAATCAGTCAGTAGCCGAAA
TCATCTTGATTTATGGTACTTTCTTTCATCGCATAGTCATTATAAAAACA
CTGATCTGGCATTGTATTGTTTTAGCTTTTTGTTCAATTTTCTTTTGCTA
CAAACAAAAGAAAAGTTGCAATTTGCATACTTTTTGATCACGTTACCAAA
ATCTCCTCTTGAGATTGGTCTATTTTCTAATCACATGATCAAAAAGTTTG
CAAAATAAATCGATTTTGTACGTTAGCTCCATCTTTTAACAATAAAAAGA
GACAAAAGCCTTCCAGACCAGTGTTTTTATAATGACTATGCTTTCATCAC
CTGCAGACCACAACATTTTCTTATCCCCAATTTATAAAATTCATGACATG
ACTTAGTATTTACATTCTATCTAGATTCTCCAATCACAGACCAGAACAGT
CTGGTTTATATTCGACTCTTGTTTTAGATTCATTGGAGGGTCCAAATGCT
GCTTGTGATTGCAACTATCACCCAGGTGGTTGTACAATCAGTAAGATAGC
TCCTGCAAATTACGCTTGTAAATGTCAGTATAAAGGCGCTTGGACATGTA
ATGGTTATGTTGTTGAATGCCGCGAACCTAACGATGATAAATGCAGACAA
CCTGATAATTCATTTAGATCGTGTATGCAAGGCGATGGAGATTGTCAAGG
TATAATAATGCAACAATCATGTCTGACAGTCTCACAGTTTTACTAAAAAA
TCAAACGGCTACTTTAAGTGAATACATTTTTGCAAGCAGATACTTTCACA
AGACAATTCTTTTTTCAAAGAAATTTAAATTTTTATGACATTCATTTACA
CGAATCGGTCCCTTTTTCAACTGATTTCTTTTTTCCTAGGGCTTTTGGTA
AGGTACTGGTTTTAAAGTTTTCGCTAGCATCAAATTTCGCGAATTTTTGG
AAAAAGTCGCAAAACTCACAAAGTATAATACTCACGTAAAATTATTCACT
TAAAATACATTTGGTGATGGTTTTGACTCTGGCTGTGATACAGAGATGTT
ATAATGTGACTTATTTTATATGCAAATTCAAATTTCAGGCTACAAAGAAG
GAAATTGTGATTGCGATTACCACCCAGGAGGGTGTAAGATTTCATCACCG
CCTCCCGCCTATGCTGCTTGTAGGTGCAATTACAAAGGTGAGAGAAATAA
GTTTTATACACACAGTATATAAATTATATATAACACTTTTCTTGTAAGAA
GAACCAATATTTTTGGAGATCAAGGAAATAATGTTAAAAAAATAAAAAAA
AGTTAAGATGTCTATTCTAATTGTAAGAGTAGGAAAAAGGGAACGGACAG
TTGGAATTTAACTCCTTAACGTTCTCAAAAAGCTAAAAAATCGCATATGT
AAGATTTTTCGATGCTTAAACTTTGAATCGAATTATCTCGGGCTTGGTAA
TAGCTAAAACCCTTAATGTTTGGCACCGTTGGAAAGCTCTTTCAAAGCTC
TATTTTTTCAGCGTGTCAGATTTTTGAATTAGGTTCTCACAGCATTGTTT
TTAAATTGTTCTTATTTTAAACAAACACTTTTGACTAATTTCTAACAATC
TGGTTTCCTATGAAAAATTTACACAGTAAACTGTAACTTATTCGAACTTC
TATTATTTGAAACTTTCTATAAATCGAACTTCAAAGAGGAATCCTCTTGA
AATACTTTTTATAATTCAAATCTCTATAATTCTTTAGTTCGAATTAGGGA
GAGAAAAGATAAAAAGTTTGATTATGATTGAAAGTGTCACTATTGTTGCA
TACCTGTCTATATCATAACAGTGTAATAATTAACCCAAAATGCATGAGCG
ATTCATAGAGGCCCATGTGTCCGCACGGTGGCCTGCGAATTTGTAAAACT
ATATTATTGTTATTATAAAATTTTCAGGTGCCTGGACATGTGGTGGACAT
CTTGTGAGATGTCCCGTCTGGAACAACCATTTTTGTTTGAATCCCGACTT
TTCAAAAGCCACGTGTCAATTTGGCGGTGGTGATTGTGGAGGGTATTGAA
GCCTCATAATTTATTTCTCATTTTATAAGAAGAAATAAACCGAAAAAGAA
TCTCTTTCTAATTTAGTAATATTTCTTATAACATCTTGCAGAAATAAGTT
TCAATTATTCTACTAAAAGAAGAC

Coding sequence (CDS) from alignment at scaffold_117:379265..382138-

>TCONS_00046802 ID=TCONS_00046802|Name=TCONS_00046802|organism=Clytia hemisphaerica|type=CDS|length=2076bp|location=Sequence derived from alignment at scaffold_117:379265..382138- (Clytia hemisphaerica)
GTGCCTGGACATGTGGTGGACATCTTGTGAGATGTCCCGTCTGGAACAAC
CATTTTTGTTTGAATCCCGACTTTTCAAAAGCCACGTGTCAATTTGGCGG
TGGTGATTGTGGAGGGTATTGAGCTACAAAGAAGGAAATTGTGATTGCGA
TTACCACCCAGGAGGGTGTAAGATTTCATCACCGCCTCCCGCCTATGCTG
CTTGTAGGTGCAATTACAAAGATTCATTGGAGGGTCCAAATGCTGCTTGT
GATTGCAACTATCACCCAGGTGGTTGTACAATCAGTAAGATAGCTCCTGC
AAATTACGCTTGTAAATGTCAGTATAAAGGCGCTTGGACATGTAATGGTT
ATGTTGTTGAATGCCGCGAACCTAACGATGATAAATGCAGACAACCTGAT
AATTCATTTAGATCGTGTATGCAAGGCGATGGAGATTGTCAAGATGACAT
TCGACTTGGCGGCAACCTTTGTTTTCTTGATCCTTCTGGTTGGGTCATCA
ACATCAACAATTGAAAAAGGTGCCTGGACATGTGGTGGACATCTTGTGAG
ATGTCCCGTCTGGAACAACCATTTTTGTTTGAATCCCGACTTTTCAAAAG
CCACGTGTCAATTTGGCGGTGGTGATTGTGGAGGGTATTGAGCTACAAAG
AAGGAAATTGTGATTGCGATTACCACCCAGGAGGGTGTAAGATTTCATCA
CCGCCTCCCGCCTATGCTGCTTGTAGGTGCAATTACAAAGATTCATTGGA
GGGTCCAAATGCTGCTTGTGATTGCAACTATCACCCAGGTGGTTGTACAA
TCAGTAAGATAGCTCCTGCAAATTACGCTTGTAAATGTCAGTATAAAGGC
GCTTGGACATGTAATGGTTATGTTGTTGAATGCCGCGAACCTAACGATGA
TAAATGCAGACAACCTGATAATTCATTTAGATCGTGTATGCAAGGCGATG
GAGATTGTCAAGATGACATTCGACTTGGCGGCAACCTTTGTTTTCTTGAT
CCTTCTGGTTGGGTCATCAACATCAACAATTGAAAAAGGTGCCTGGACAT
GTGGTGGACATCTTGTGAGATGTCCCGTCTGGAACAACCATTTTTGTTTG
AATCCCGACTTTTCAAAAGCCACGTGTCAATTTGGCGGTGGTGATTGTGG
AGGGTATTGAGCTACAAAGAAGGAAATTGTGATTGCGATTACCACCCAGG
AGGGTGTAAGATTTCATCACCGCCTCCCGCCTATGCTGCTTGTAGGTGCA
ATTACAAAGATTCATTGGAGGGTCCAAATGCTGCTTGTGATTGCAACTAT
CACCCAGGTGGTTGTACAATCAGTAAGATAGCTCCTGCAAATTACGCTTG
TAAATGTCAGTATAAAGGCGCTTGGACATGTAATGGTTATGTTGTTGAAT
GCCGCGAACCTAACGATGATAAATGCAGACAACCTGATAATTCATTTAGA
TCGTGTATGCAAGGCGATGGAGATTGTCAAGATGACATTCGACTTGGCGG
CAACCTTTGTTTTCTTGATCCTTCTGGTTGGGTCATCAACATCAACAATT
GAAAAAGGTGCCTGGACATGTGGTGGACATCTTGTGAGATGTCCCGTCTG
GAACAACCATTTTTGTTTGAATCCCGACTTTTCAAAAGCCACGTGTCAAT
TTGGCGGTGGTGATTGTGGAGGGTATTGAGCTACAAAGAAGGAAATTGTG
ATTGCGATTACCACCCAGGAGGGTGTAAGATTTCATCACCGCCTCCCGCC
TATGCTGCTTGTAGGTGCAATTACAAAGATTCATTGGAGGGTCCAAATGC
TGCTTGTGATTGCAACTATCACCCAGGTGGTTGTACAATCAGTAAGATAG
CTCCTGCAAATTACGCTTGTAAATGTCAGTATAAAGGCGCTTGGACATGT
AATGGTTATGTTGTTGAATGCCGCGAACCTAACGATGATAAATGCAGACA
ACCTGATAATTCATTTAGATCGTGTATGCAAGGCGATGGAGATTGTCAAG
ATGACATTCGACTTGGCGGCAACCTTTGTTTTCTTGATCCTTCTGGTTGG
GTCATCAACATCAACAATTGAAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029863XLOC_029863Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046802-exon-scaffold_117-1575043694:381738..382138TCONS_00046802-exon-scaffold_117-1575043694:381738..382138Clytia hemisphaericaexon
TCONS_00046802-exon-scaffold_117-1575043694:380740..380961TCONS_00046802-exon-scaffold_117-1575043694:380740..380961Clytia hemisphaericaexon
TCONS_00046802-exon-scaffold_117-1575043694:380252..380350TCONS_00046802-exon-scaffold_117-1575043694:380252..380350Clytia hemisphaericaexon
TCONS_00046802-exon-scaffold_117-1575043694:379265..379511TCONS_00046802-exon-scaffold_117-1575043694:379265..379511Clytia hemisphaericaexon
TCONS_00046802-exon-scaffold_117-1510915933:381738..382138TCONS_00046802-exon-scaffold_117-1510915933:381738..382138Clytia hemisphaericaexon
TCONS_00046802-exon-scaffold_117-1510915933:380740..380961TCONS_00046802-exon-scaffold_117-1510915933:380740..380961Clytia hemisphaericaexon
TCONS_00046802-exon-scaffold_117-1510915933:380252..380350TCONS_00046802-exon-scaffold_117-1510915933:380252..380350Clytia hemisphaericaexon
TCONS_00046802-exon-scaffold_117-1510915933:379265..379511TCONS_00046802-exon-scaffold_117-1510915933:379265..379511Clytia hemisphaericaexon
TCONS_00046802-exon-scaffold_117-1491911889:381738..382138TCONS_00046802-exon-scaffold_117-1491911889:381738..382138Clytia hemisphaericaexon
TCONS_00046802-exon-scaffold_117-1491911889:380740..380961TCONS_00046802-exon-scaffold_117-1491911889:380740..380961Clytia hemisphaericaexon
TCONS_00046802-exon-scaffold_117-1491911889:380252..380350TCONS_00046802-exon-scaffold_117-1491911889:380252..380350Clytia hemisphaericaexon
TCONS_00046802-exon-scaffold_117-1491911889:379265..379511TCONS_00046802-exon-scaffold_117-1491911889:379265..379511Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046802-proteinTCONS_00046802-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_117supercontigscaffold_117:379265..382138 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0.0487257	0	0	4.75007	6.38388	7.44851	12.3741	1.22652	1.00571	11.9096	11.2163	2.43724	2.972	8.08209	6.95851	5.91411	7.73838	0	0.204937	0.155438	0.316733
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046802 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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