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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046806 ID=TCONS_00046806|Name=TCONS_00046806|organism=Clytia hemisphaerica|type=transcript|length=1891bp TAGAGAACAGAAAATcataagaaaattcaaaaaaagttataaCAATGGTA ACAAAACGCTTTAATGTGATTCTTTTGATCCTCTGTATATGTTGCGTCGC ACTTTATACAAATTATGGGACATTTACAGTGTCCGAAGAAGATCCTGTCG ACATAGAAGACATTGAAGTTTATCATCCACCACTATCCGAAAGCATATGG TTGGCTGATACCAATAAAGATCACCAAGCGATTTACAGTCAACTGAAACC TGTCCAATGGTACAAAGACAATTGGAAAGAAAAAGCAGACTGTCCTTATC CGTCCTATGTTCacaagaaatatgaaaaattatcTTGGTTCCCGTTGTTT TTACATCACCAAATGAAAGTCAATTTATCTGCAATCCCACCAAAACAATA CAAGGAAGGATGTACCAGATTCTGGCATGCACAACCACAAACAGACTTTG GAGAGCTTCCACATCGCAAACTGACTTGGAAAGAACAAAAACCGCCACCA AATTATGTGCGCCCTAATTGTTCTTTTGGACAAGGTACCAAGCCATGGAC ACGTTGCTCAAGAAAGCATCAAGAATTATGGAGTTTGCTTGACCAATCAG GCATCATTTATTTCGCGCGATCAGGATCAGAACTTGGAGTCATCAGAAAC GGCACGTATCTTTCACACGACGGCGATATGGATGTCTATGTAGATTATCC TCCAGAGAAATTTATCAAACTTATTGGAAATAAACTTACACCAAGACCTT ACGGAGATCGGTCAATAGGAAGTGTTAAAGCTGAAACACATTGGGATGTA CCTGGTTGTCCTAAACTTAATATGGTTTTCAACGATTAGATGGTCAACCA AATGGCTTTCACCAAACCACTCCCCACACATAAGGATCTATGCACGTGTT ATTTACAGGCCTCTAAAATGGCTTGCCATAAAGATGCCAAAGACAGAATG TTTGTGCATTATGGGCCCTCATGGTTTGATACGCTTAATGCCAAATATGG TGATATGCCATGGAGGGCAAGAGGAACAACGATACAaacaaaattagcaa aaatggCATATAGAGACGGAATAATCTACGAAGAAGCAGTGAGAAAGCTT GATCCAAAGCTTCAGTATACAAAATATGACATGGAAATGACTTTAGCTCA AAATAATGTTCTACACGCATCGATTTTAACTAAATATTCTACGTGTGTGC ACGGAACTTTTTGTTAAgctcttttgagaaatttgagtGTATTTAGAAAA ATCAACATCGCATTCATTTTCTTTGATAATATAACATAGGGGAAccaatt ttgacgaaaaactctTTTCGCGATTAAAGAATTTAAGTGAgagctgattt ttgcaaaatggaaagttaaatttattttctatcaTTGCGTACATGGCACC TTTATTCAAAAGATGGCGCGATGAAAGTGTAGTGTATCCGAAAAAGTTCA TCCATTAATAATTCTTTAATTGATTAAGAAACCAACaccgtggtgtcctt gaaaaagcagaaaaatttctGTTAATTTTAATTGCTAATGTTTTAATTTG TTAATTGTCAATTTCAAGTCCCTTAAATACTTGTCGTACATTTGGGTGAG AAGCCGCTCTTTTttagcaagaaataatttttatgctATTTATTTGCGAA TGGCAAGGTTAATTGCATCTTATTTTGTCTAAGCATGTGCGttttttaag caataaaatATAAGGctgttttggaaaaattaatttaattttaggTCGTT ACTCATATGTCATATGTTAATTTTGGCAAGAATTTATTTTTACGAAAATT TACTATAATTAATTCTCGTCAATATTAGTTAATAATTAGATTAGATGATT AGATTTAATAGGCTATAATTTGagtatatatttatttttct Run BLAST on NCBI protein sequence of TCONS_00046806-protein >TCONS_00046806-protein ID=TCONS_00046806-protein|Name=TCONS_00046806-protein|organism=Clytia hemisphaerica|type=polypeptide|length=264bp
MVTKRFNVILLILCICCVALYTNYGTFTVSEEDPVDIEDIEVYHPPLSES IWLADTNKDHQAIYSQLKPVQWYKDNWKEKADCPYPSYVHKKYEKLSWFP LFLHHQMKVNLSAIPPKQYKEGCTRFWHAQPQTDFGELPHRKLTWKEQKP PPNYVRPNCSFGQGTKPWTRCSRKHQELWSLLDQSGIIYFARSGSELGVI RNGTYLSHDGDMDVYVDYPPEKFIKLIGNKLTPRPYGDRSIGSVKAETHW DVPGCPKLNMVFND Run BLAST on NCBI transcript from alignment at scaffold_117:436379..440789- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046806 ID=TCONS_00046806|Name=TCONS_00046806|organism=Clytia hemisphaerica|type=transcript|length=4411bp|location=Sequence derived from alignment at scaffold_117:436379..440789- (Clytia hemisphaerica) TAGAGAACAGAAAATCATAAGAAAATTCAAAAAAAGTTATAACAATGGTA
ACAAAACGGTAAGACGACGTTTAATTTCAAGTAACTTTGCTTTAAAGCTA
GTTCATTTTTCATATTTGGTGATTGTGGGACCTTGTCACAGACTCAATTT
CTAATTTATGGTTTTTCGTACCCCTGTAAGGGAGGGGGGGTTTGTATGGG
TTCAAAATACCGTTTTCATTTTTTGCTGAATCCCGGGATCCCGAAAAATT
GAAAAAAATTATAACATCGTAACACCGGTTCGTAGAGGTTCAAATATCGA
CATAATTACAAAAAATAACGCTAAATACCGTCACCGTCTGATTTTAAAAT
ACCGTTTTCCCGTTTCGTTTTTCGTAAAATCCCGTAATACCGTACTAAAA
TAGGGCCAATCCCGTCACACCGTAAAAGTACAACCCCCCTGTGAGACACT
TTTTATATGCTTTTATTTCCAGCATTTTGAGAGTGTTTTTGTTCATTTTC
CAGAAAAATGGGGTTGTTTTAGAGTCCGAGGGGAGGGGGGTCAATCGATT
TAAAAACGACAATAATTAGGCCTTTGAAATCAGACCCTTACAATGCAGAG
AAAATTTTGCAAAATTTGAGCGAAAAATTGACCTCTATGTTGCATTTCTT
GAAATTCTTTGACCATTTTCAGGCAAAATATGGTCAGATTTTCGAAATTT
TACACCCTTGGAGTGCAATTTTTCTCATCTTTGCAAATTTCGACCCTTAC
AGTGCACTTTGAGAAGCTTGGGTAATATACCCTAAAGGGCCTCACGTAGG
GTAGGTCATTTACCTTGAGTTGCCCCCCCCCCCGAGTCCATAAAGTCTTA
AAACGTTCTTAATATTTTTTTTCATCAAAGCCTTATGGTCTAGTTTGTTC
TTGTAATAAAACCTGCATTCTTCGTTTTGTAGCTTTAATGTGATTCTTTT
GATCCTCTGTATATGTTGCGTCGCACTTTATACAAGTAAGTGGTTTTCAG
TTTTTTTTTATTAGAACGTCGTAATTTGGGCGGAGCCTGAATGAATGTGC
TTATTTTTTGACAATTTTGAGCCTAAAATGTTTAAATTTAACGTTTTTGA
AATTCACTCAAATGTACAGAATGATCTTGCATTATAAAAATTGGCAAGTC
TGCATTATTTTAAAGTTAAGAAGGCTGAAATTCCAGGGTATTTTCCTACC
GGGGACGAAAGTTTTGCTAGATTTTCCAGTGGNTCCAGGGTATTTTCCTA
CCGAGAACGAAAGTTTTGCCAGATTTTCCAGTGGAGCTGGGGTCCCAGCG
GGTCTGTGACACAGGGGTGTTTTAATGGACTTCTTATTGATTTGTAGATT
ATGGGACATTTACAGTGTCCGAAGAAGATCCTGTCGACATAGAAGACATT
GAAGTTTATCATCCACCACTATCCGAAAGCATATGGTTGGCTGATACCAA
TAAAGATCACCAAGCGATTTACAGTCAACTGAAACCTGTCCAATGGTACA
AAGACAATTGGAAAGAAAAAGCAGACTGTCCTTATCCGTCCTATGTTCAC
AAGAAATATGAAAAATTATCTTGGTTCCCGTTGTTTTTACATCACCAAAT
GAAAGTCAATTTATCTGCAATCCCACCAAAACAATACAAGGAAGGATGTA
CCAGGTAATATCCTATAACTCTTATTCCAACGAAAATATTCTTGTGTTGT
TGATTTACACAAACTATAGAAGAACAGGCTTCGATGGCCAAAATGTTAAG
AATAAGTTAAGAACATTTTAAGGCTTCACAGACCAGGTAATGCCTAGGCT
ACGTCATATCTTGCTTCGTTTCAAGCATAAAACTCGTATTCTTCGGGATC
ATAGGCGCACTGTTCTTATTTTGAATTTTGGATTTCTCTAGATACATCGC
ATGTGCGCACTGAGGTTTTGGTGAAACAATAGAGAGTTTTCAAACCCAAT
CCAATGAATTGTGTTTTAAACACAATTCTTCTTTTATTTAAAATCTCTTT
TGATAAACTTCTTTTGTTAAAAACTTCTATTATGCTTAATCCTATTAAAA
AGCAAGTTCCCGGTGGGGGTCACTAGTGGCCTCCTTTAGCGCAATGCCTA
TAGACCAAGAGTAAGGTCTAAAAGCCTGGAGCTGTCAATTGTGTAGACTA
GGTAATGCCTTATCTCGTATTCCAACAAAAAAATGTTTAGTTGCTTTACA
CGTATTTTTTATTAAAACGAACTACTATATAAGAACAAAAGGCTTGATGG
CCAAAATTTTAAGAATAAGTTAAGAACATTTTAAGGCTTTGAGGACTCTA
AAACACCCACTTTCTTAGGAAAACGGACAAAAATACCCACAAAATAGTGA
AAATAAGAACATGCTAGAACATCTATAGGCTTAAATCTAAAAAAGTTAAG
AACATCCAAAGGCTTCAAAAATTTTAGATTTTCTTATAAAAAAACGTGTT
TAAGATATCCCAAAGACAGAGACTTCAACATGTAGTAAAAAAAGAGGGCA
AATTTAAAGTTAATGGTCTTTAGATGCAAATCTCTATGAGTTTTCCCGAC
AGCCTTTCCAAAAGATCTTCCACTAGCAACATTGCCACTTGCACCTCCCT
CGATGAATGGCACAATATGTTATTATAACGACCATCTAGTATTATAAAGA
TGTCATGAATGTTAGACAGACAGTGTTTTGACATTATGTGCCAACTGGGC
CCTAATTACAAAATTTAATTCTTAACTTTTTTCCTAAGATTCATATATAA
GTCACGAAAAAACGTCGAGTAAAGCTCTGATCGGCTGAGACATGCAAAGA
TTACCTCATACTCGGGGCATTTGAAAATATATGCTTATGTGTGCATTATT
CAGCCAATCAGAACTTTACTAAACGTTTTTTGGGGACTTTTTTATATGAA
TCTGCTAATCGGAAATTTGTGTATTTATTCTGTAATAGATTCTGGCATGC
ACAACCACAAACAGACTTTGGAGAGCTTCCACATCGCAAACTGACTTGGA
AAGAACAAAAACCGCCACCAAATTATGTGCGCCCTAATTGTTCTTTTGGA
CAAGGTACCAAGCCATGGACACGTTGCTCAAGAAAGCATCAAGAATTATG
GAGTTTGCTTGACCAATCAGGCATCATTTATTTCGCGCGATCAGGATCAG
AACTTGGAGTCATCAGAAACGGCACGTATCTTTCACACGACGGCGATATG
GATGTCTATGTAGATTATCCTCCAGAGAAATTTATCAAACTTATTGGAAA
TAAACTTACACCAAGACCTTACGGAGATCGGTCAATAGGAAGTGTTAAAG
CTGAAACACATTGGGATGTACCTGGTTGTCCTAAACTTAATATGGTTTTC
AACGATTAGATGGTCAACCAAATGGCTTTCACCAAACCACTCCCCACACA
TAAGGATCTATGCACGTGTTATTTACAGGCCTCTAAAATGGCTTGCCATA
AAGATGCCAAAGACAGAATGTTTGTGCATTATGGGCCCTCATGGTTTGAT
ACGCTTAATGCCAAATATGGTGATATGCCATGGAGGGCAAGAGGAACAAC
GATACAAACAAAATTAGCAAAAATGGCATATAGAGACGGAATAATCTACG
AAGAAGCAGTGAGAAAGCTTGATCCAAAGCTTCAGTATACAAAATATGAC
ATGGAAATGACTTTAGCTCAAAATAATGTTCTACACGCATCGATTTTAAC
TAAATATTCTACGTGTGTGCACGGAACTTTTTGTTAAGCTCTTTTGAGAA
ATTTGAGTGTATTTAGAAAAATCAACATCGCATTCATTTTCTTTGATAAT
ATAACATAGGGGAACCAATTTTGACGAAAAACTCTTTTCGCGATTAAAGA
ATTTAAGTGAGAGCTGATTTTTGCAAAATGGAAAGTTAAATTTATTTTCT
ATCATTGCGTACATGGCACCTTTATTCAAAAGATGGCGCGATGAAAGTGT
AGTGTATCCGAAAAAGTTCATCCATTAATAATTCTTTAATTGATTAAGAA
ACCAACACCGTGGTGTCCTTGAAAAAGCAGAAAAATTTCTGTTAATTTTA
ATTGCTAATGTTTTAATTTGTTAATTGTCAATTTCAAGTCCCTTAAATAC
TTGTCGTACATTTGGGTGAGAAGCCGCTCTTTTTTAGCAAGAAATAATTT
TTATGCTATTTATTTGCGAATGGCAAGGTTAATTGCATCTTATTTTGTCT
AAGCATGTGCGTTTTTTAAGCAATAAAATATAAGGCTGTTTTGGAAAAAT
TAATTTAATTTTAGGTCGTTACTCATATGTCATATGTTAATTTTGGCAAG
AATTTATTTTTACGAAAATTTACTATAATTAATTCTCGTCAATATTAGTT
AATAATTAGATTAGATGATTAGATTTAATAGGCTATAATTTGAGTATATA
TTTATTTTTCT Coding sequence (CDS) from alignment at scaffold_117:436379..440789- >TCONS_00046806 ID=TCONS_00046806|Name=TCONS_00046806|organism=Clytia hemisphaerica|type=CDS|length=3180bp|location=Sequence derived from alignment at scaffold_117:436379..440789- (Clytia hemisphaerica) ATTCTGGCATGCACAACCACAAACAGACTTTGGAGAGCTTCCACATCGCA AACTGACTTGGAAAGAACAAAAACCGCCACCAAATTATGTGCGCCCTAAT TGTTCTTTTGGACAAGGTACCAAGCCATGGACACGTTGCTCAAGAAAGCA TCAAGAATTATGGAGTTTGCTTGACCAATCAGGCATCATTTATTTCGCGC GATCAGGATCAGAACTTGGAGTCATCAGAAACGGCACGTATCTTTCACAC GACGGCGATATGGATGTCTATGTAGATTATCCTCCAGAGAAATTTATCAA ACTTATTGGAAATAAACTTACACCAAGACCTTACGGAGATCGGTCAATAG GAAGTGTTAAAGCTGAAACACATTGGGATGTACCTGGTTGTCCTAAACTT AATATGGTTTTCAACGATTAGATTATGGGACATTTACAGTGTCCGAAGAA GATCCTGTCGACATAGAAGACATTGAAGTTTATCATCCACCACTATCCGA AAGCATATGGTTGGCTGATACCAATAAAGATCACCAAGCGATTTACAGTC AACTGAAACCTGTCCAATGGTACAAAGACAATTGGAAAGAAAAAGCAGAC TGTCCTTATCCGTCCTATGTTCACAAGAAATATGAAAAATTATCTTGGTT CCCGTTGTTTTTACATCACCAAATGAAAGTCAATTTATCTGCAATCCCAC CAAAACAATACAAGGAAGGATGTACCAGCTTTAATGTGATTCTTTTGATC CTCTGTATATGTTGCGTCGCACTTTATACAAATGGTAACAAAACGATTCT GGCATGCACAACCACAAACAGACTTTGGAGAGCTTCCACATCGCAAACTG ACTTGGAAAGAACAAAAACCGCCACCAAATTATGTGCGCCCTAATTGTTC TTTTGGACAAGGTACCAAGCCATGGACACGTTGCTCAAGAAAGCATCAAG AATTATGGAGTTTGCTTGACCAATCAGGCATCATTTATTTCGCGCGATCA GGATCAGAACTTGGAGTCATCAGAAACGGCACGTATCTTTCACACGACGG CGATATGGATGTCTATGTAGATTATCCTCCAGAGAAATTTATCAAACTTA TTGGAAATAAACTTACACCAAGACCTTACGGAGATCGGTCAATAGGAAGT GTTAAAGCTGAAACACATTGGGATGTACCTGGTTGTCCTAAACTTAATAT GGTTTTCAACGATTAGATTATGGGACATTTACAGTGTCCGAAGAAGATCC TGTCGACATAGAAGACATTGAAGTTTATCATCCACCACTATCCGAAAGCA TATGGTTGGCTGATACCAATAAAGATCACCAAGCGATTTACAGTCAACTG AAACCTGTCCAATGGTACAAAGACAATTGGAAAGAAAAAGCAGACTGTCC TTATCCGTCCTATGTTCACAAGAAATATGAAAAATTATCTTGGTTCCCGT TGTTTTTACATCACCAAATGAAAGTCAATTTATCTGCAATCCCACCAAAA CAATACAAGGAAGGATGTACCAGCTTTAATGTGATTCTTTTGATCCTCTG TATATGTTGCGTCGCACTTTATACAAATGGTAACAAAACGATTCTGGCAT GCACAACCACAAACAGACTTTGGAGAGCTTCCACATCGCAAACTGACTTG GAAAGAACAAAAACCGCCACCAAATTATGTGCGCCCTAATTGTTCTTTTG GACAAGGTACCAAGCCATGGACACGTTGCTCAAGAAAGCATCAAGAATTA TGGAGTTTGCTTGACCAATCAGGCATCATTTATTTCGCGCGATCAGGATC AGAACTTGGAGTCATCAGAAACGGCACGTATCTTTCACACGACGGCGATA TGGATGTCTATGTAGATTATCCTCCAGAGAAATTTATCAAACTTATTGGA AATAAACTTACACCAAGACCTTACGGAGATCGGTCAATAGGAAGTGTTAA AGCTGAAACACATTGGGATGTACCTGGTTGTCCTAAACTTAATATGGTTT TCAACGATTAGATTATGGGACATTTACAGTGTCCGAAGAAGATCCTGTCG ACATAGAAGACATTGAAGTTTATCATCCACCACTATCCGAAAGCATATGG TTGGCTGATACCAATAAAGATCACCAAGCGATTTACAGTCAACTGAAACC TGTCCAATGGTACAAAGACAATTGGAAAGAAAAAGCAGACTGTCCTTATC CGTCCTATGTTCACAAGAAATATGAAAAATTATCTTGGTTCCCGTTGTTT TTACATCACCAAATGAAAGTCAATTTATCTGCAATCCCACCAAAACAATA CAAGGAAGGATGTACCAGCTTTAATGTGATTCTTTTGATCCTCTGTATAT GTTGCGTCGCACTTTATACAAATGGTAACAAAACGATTCTGGCATGCACA ACCACAAACAGACTTTGGAGAGCTTCCACATCGCAAACTGACTTGGAAAG AACAAAAACCGCCACCAAATTATGTGCGCCCTAATTGTTCTTTTGGACAA GGTACCAAGCCATGGACACGTTGCTCAAGAAAGCATCAAGAATTATGGAG TTTGCTTGACCAATCAGGCATCATTTATTTCGCGCGATCAGGATCAGAAC TTGGAGTCATCAGAAACGGCACGTATCTTTCACACGACGGCGATATGGAT GTCTATGTAGATTATCCTCCAGAGAAATTTATCAAACTTATTGGAAATAA ACTTACACCAAGACCTTACGGAGATCGGTCAATAGGAAGTGTTAAAGCTG AAACACATTGGGATGTACCTGGTTGTCCTAAACTTAATATGGTTTTCAAC GATTAGATTATGGGACATTTACAGTGTCCGAAGAAGATCCTGTCGACATA GAAGACATTGAAGTTTATCATCCACCACTATCCGAAAGCATATGGTTGGC TGATACCAATAAAGATCACCAAGCGATTTACAGTCAACTGAAACCTGTCC AATGGTACAAAGACAATTGGAAAGAAAAAGCAGACTGTCCTTATCCGTCC TATGTTCACAAGAAATATGAAAAATTATCTTGGTTCCCGTTGTTTTTACA TCACCAAATGAAAGTCAATTTATCTGCAATCCCACCAAAACAATACAAGG AAGGATGTACCAGCTTTAATGTGATTCTTTTGATCCTCTGTATATGTTGC GTCGCACTTTATACAAATGGTAACAAAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00046806-exon-scaffold_117-1575043694:440732..440789 | TCONS_00046806-exon-scaffold_117-1575043694:440732..440789 | Clytia hemisphaerica | exon |
TCONS_00046806-exon-scaffold_117-1575043694:439805..439857 | TCONS_00046806-exon-scaffold_117-1575043694:439805..439857 | Clytia hemisphaerica | exon |
TCONS_00046806-exon-scaffold_117-1575043694:439136..439442 | TCONS_00046806-exon-scaffold_117-1575043694:439136..439442 | Clytia hemisphaerica | exon |
TCONS_00046806-exon-scaffold_117-1575043694:436379..437851 | TCONS_00046806-exon-scaffold_117-1575043694:436379..437851 | Clytia hemisphaerica | exon |
TCONS_00046806-exon-scaffold_117-1510915933:440732..440789 | TCONS_00046806-exon-scaffold_117-1510915933:440732..440789 | Clytia hemisphaerica | exon |
TCONS_00046806-exon-scaffold_117-1510915933:439805..439857 | TCONS_00046806-exon-scaffold_117-1510915933:439805..439857 | Clytia hemisphaerica | exon |
TCONS_00046806-exon-scaffold_117-1510915933:439136..439442 | TCONS_00046806-exon-scaffold_117-1510915933:439136..439442 | Clytia hemisphaerica | exon |
TCONS_00046806-exon-scaffold_117-1510915933:436379..437851 | TCONS_00046806-exon-scaffold_117-1510915933:436379..437851 | Clytia hemisphaerica | exon |
TCONS_00046806-exon-scaffold_117-1491911889:440732..440789 | TCONS_00046806-exon-scaffold_117-1491911889:440732..440789 | Clytia hemisphaerica | exon |
TCONS_00046806-exon-scaffold_117-1491911889:439805..439857 | TCONS_00046806-exon-scaffold_117-1491911889:439805..439857 | Clytia hemisphaerica | exon |
TCONS_00046806-exon-scaffold_117-1491911889:439136..439442 | TCONS_00046806-exon-scaffold_117-1491911889:439136..439442 | Clytia hemisphaerica | exon |
TCONS_00046806-exon-scaffold_117-1491911889:436379..437851 | TCONS_00046806-exon-scaffold_117-1491911889:436379..437851 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_117 | supercontig | scaffold_117:436379..440789 - |
Blast
The following BLAST results are available for this feature:
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