TCONS_00046809 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046809
Unique NameTCONS_00046809
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1636

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046809 ID=TCONS_00046809|Name=TCONS_00046809|organism=Clytia hemisphaerica|type=transcript|length=1636bp
ATAAAAcagtcatcaaaaattgaacaAATGTTCAATGAACGATAGGTAGA
CAGATGTTGAAGGACTGATATATCTTTATCGAAGGTATGAAAAATCTGAA
TACATATCTGAAAAGGAAGGATAAAATATATAGATTTTTTGGTCCAAgtt
cttcttcattttgttttcgaaattttcaaaaaagttttagaTTGACCAAT
TAAGAATTATCCATCCAACAAGATACAAAAAGTTCAATGAAACCTAACAT
CTAAATGGCacaactttcaaataaaaacagcTTCAATGCGATACTGTTGA
TTGTTCTGGCTTCAGGATTGTTGATGTTTTATACACTGTTTGGTACTGGC
GAAACATTTGGTTTGGTGTTTGGTGGCAACAACAAAGgTTATGAGAAGAA
GCCTGCATACAAAATCATCAACAAAATCTATAAACCTTCAACGACATCGA
CAACAACGAAAACGACTTTGACTACGACGATAGgaaacaaaaccaaaaac
aaaGGAGACCACAATGCAATTTCCGAAAAGAGATGGTTGGCTGAGACCAA
TAAAGATCACCAAGCCATTTACAGTCAGCTGAAACCCGTCCAATGGTACA
AAGACAACTGGAAAGGCGATTGTCCTTATCCGTCCTATGTGTTTCGAAAG
CTTGAGAGTCAATCTTGGTTTCCATTATATTTGCATCACCAAATGAAAGT
CAATCTATCTCAAACCATACCAAAACGACTCAAACAAAGCTGTACCAGAT
GGTGGCACGCACATGCAGAAGCAGATTTTGTCGACCTTCCACATCGCAAG
TTTACATGGAAAGAACAGAAACCCAACCACGTGCGTCCTAATTGCTCTTT
TGGACAAAAACGCAGACCTTGGACCCGATGTTCAAAGAAACATCAAGAGT
TATGGACTGTGTTAGATAAGCTAGGTGTAATTTACTTCATACGGTCTGGG
TCCGAACTTGGAGTGATCAGAGGCAGTTCTTACCTCTCCATGGGTGAGGA
ATGGGACGTCGATGTCTTTGTAGATGTACCACAAGAAAAACTGATTCGAT
TACTAAGAAATAAACTTAATCCTCGTCCTCATGTAGATGGATCCTTAAAA
AGTGTTACAGCTGAAACACACTGGCGCGTGAAAGGTTGCCCTGAAATCCA
CATGGTTTTTAATGAATGGATGGTTGATCAAATGGTTCAAGAAATACCAC
GACCAACACACGATAGCCTGTGTACTTGTTACATGAACTCTGCCAAATTA
GCTTGCCATAAAGACGCCATAGAAAGAATGTATGCACAATATGGACCTTC
TTGGTCTGTCCCTCTCCATGccaaatttcttgattttcctTGGGCAGCAC
GAGGCAAAAACATCCAAcctaaacttaaaaagttaacaTCTCCAGATGGA
ATAATTTACGAAAAAGCAGTGAGAGATCTTGATGGTAGCATCCAGTATAC
AAAATACGATATGGAAATGATTCTAGCTCAACTTAATGTTCTACAATCTT
CAATTTTAAGCAAGTATTCGTCGggttgaaaatatataaatcacACTGTT
cactctctcttattcgatcttcaaagAGTTAAAAAACTTTATTCGAAATA
CAGAACTCTACTGCTACTATTTCTTTCCGTTAACCA
Run BLAST on NCBI

transcript from alignment at scaffold_117:450813..457151-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046809 ID=TCONS_00046809|Name=TCONS_00046809|organism=Clytia hemisphaerica|type=transcript|length=6339bp|location=Sequence derived from alignment at scaffold_117:450813..457151- (Clytia hemisphaerica)
ATAAAACAGTCATCAAAAATTGAACAAATGTTCAATGAACGATAGGTAGA
CAGATGTTGAAGGACTGATATATCTTTATCGAAGGTATGAAAAATCTGAA
TACATATCTGAAAAGGAAGGATAAAATATATAGATTTTTTGGTCCAAGTT
CTTCTTCATTTTGTTTTCGAAATTTTCAAAAAAGTTTTAGATTGACCAAT
TAAGAATTATCCATCCAACAAGGTAAACCTTTCATTTTTATTCGTATCTT
TAAAAGCAATGTACCAAAACATGCACACTGTCAAATTTTTTTTGAACAGC
TAAAATACAAAACATCGAGTTTAGCACAAAATGTAGACACGGAGCTTGAA
AACCTCGAATTGCCAGACGACGGTGGGTGCCACCCAATATTTGAAAATCA
GAAATTTTTAGTTAAAAACGGAGAAGAAACGCTGAATATTTGAGAAATTT
AAGACCTTAATCGAGGCTTTTCCCAAAAATAAGCTATTTGAGGGACGAAA
ATCTTTAGCTTTTCAGGACTTTTATTTTGTAACAGAGACTGACTGAAATG
AGATTGATGTGTTTAACCACCCACAGGGGATTTTTAAGGCCCAAAAAGAT
GCCCCTATAAAGCGGTCCGTATCCGTTTTCTGTATTTGCACAGGTGACCC
CCGACCTAAAAGCACACCTAAAAGATTCATTCGAGAAGAGCACTCATGAC
AATTTCTATTAATATTTTCTAGATACAAAAAGTTCAATGAAACCTAACAT
CTAAATGGCACAACTTTCAAATAAAAACAGGTAAAAAGTTTCCTTTGAAG
CATTTATCTAATTCTAAAAAGTTGATTCTGTAAAAAATCACTCTTCATGT
TATTTGTAGACTGGTACGCCAGTCGGGCTAAAACGGTATCACGCTGGGAA
AGTGAAGCGTAGGAGTTAGGCAAGCGTAAGAAGAAATTTTGCCAGCGAAA
AGGGCTAAGAGCCTTGTTAATCAGCAGCCTCTCACCAAATTTTCTCACTC
TCCTACACAGCTCCTATTCTAACAAACACCCGTCACCTTTATGTTCCCGC
CTGCTGACATGATTAATCAACAGACTAGTTTGCTAGTCTATGTTATTTGT
TGAACGAAATGTCTATTTTGTTGTTGTTTTTTCTTTTCTTTCTAGCTTCA
ATGCGATACTGTTGATTGTTCTGGCTTCAGGATTGTTGATGTTTTATACA
CGTAAGTAGTAGTGCCAGAATCAAAGGGATTTCCAAAATCTTCATAGGAC
TAACGAGGATCAAGTTTTGATTGGAACTGAGAGTAAATCCAAATTATAAC
GGTAATTTGAAGTCCAACGGGGAGTCAAATTTGTTCGAATTACAGAAAGA
TTCAAATTACCAAGAACTGTATTTATTTTTTCTCAAACCATTTTAGTGTT
TGGTACTGGCGAAACATTTGGTTTGGTGTTTGGTGGCAACAACAAAGGTA
AAAGAACATTCAAAGTTTTTGAAGCCTTCGTTTGTTTTTAAATTTTTCAT
TTGACGATTTTTCGAATACTTTAATCGGATTAAATTTCGCGAGATTAAAT
TTCGCGAGCGAAAAAAATCGCGAAATTTTCTGGATTTAATTTTGCATGGA
TTCAATTTCGCGAATAAGCCTGAAAACAGCTGAAAAATAGCCATTTTTTG
CCAAAAATGTAGACATTAGATTGGTTTCTCCGCCGAAAATGCAATTTTAA
AATTTCTATGGTGAATATAATTTCATGAGTCAAGAATCTCATGCCTTTTC
GCGAGTTTTAATTTCGGGAAGGTTACAAAAATTCGCGAAATCGCGAAATT
TAATCTCGCGAAAGTTAATCTGATTAAAGTATCTCCGGGCAATTTCCTTC
AAAATTGGGTGTTATAGATTCAATAAAGCCTAAAAATTTTCTAAGCATGG
CTTTTCTGCCGTAGGAAGCATTTTCATATTGGGGGGCTGAAGTTTAGTGA
CCTCGCGAGGGCCAACCATGGTTTGGCCCGAGGGGGGAAATTTTGAAAAT
TTGAGCTCTAGATTGCTTAAAAATACACTCAAAACATGCACATAAAGACA
ATTATGACAAATTAAAAAAGAAAAACTTTGCATTTTGCAAAATAACCATT
TTTGAAAAAATTATTGGGGGCCTTGCCCTCCCCAGTTGCTACGGCACTGT
TTTTAATATCAGCCATCGAAATCTTATGTTCTTGGAAAGTTTGTCATTAT
AAAAATGTGGACTATGTACCACCAATCCCTGGTGTTAAAAAAACCTTAAA
TCTCATTACCATTTCTGGAAACTTTATGTCATCGCCGCACTGAGAAAGAT
TAGCGTTTGAGAATCCTAACTGCGTTTGTTGGAAATATGCTGATGTAGCA
AAAACAAGTGCGACAAGATTAGAAAAAGGTTTTGAAAAAATTAAAATACA
TTGAATAAAAAACATTCCTCAAACAAAGGGATTGATACTTACCCTCTTTC
GAATGTTTAAAAAAATGTTTAAAATAATCAAAACATTCGGTTGTAAATTT
GTTCGAAATCAACTTTGCTATTTTTTTGTTTACAAAAGCAATAGAATGTG
AGGTCACATCTCAAAACCACTTTCGATCTTTCACTTGTTTGTAGGATATC
GTTGCGTAAAAAAGTAGCTTAAATTTATCTGACTCAGCATGATGACACTG
TCTAAAACTAGGTCACAGTGTGGATCTAAACCACACTGAAACGACCACCT
TCCATCACGCATCATGCTCGCGAAAGAGCGCACGCACATTATAAACGCGT
ACGTGTCATCTCCAGTACATTTTAGATTATTCATTGAAAACAGATTACAA
TATAGTCATTTTTTCATGTCTCGATTATTCAATTCCGAATAAAAGACATT
CAGGGGAAAAAAGAGAAACACCTGGGTAATCTAGTAAAACAGGCCGAAAG
TAAATGGTAGACAAAGTAATAAGCCAAGGCAAAACGAGATTAGCGTACCA
CTATGAAAGAAACCGCCTCCGGCGGTCGATAAGCTCCTTTTATTCCCATA
GGAAACCTTTAAAAGAGGATATTTTCCATCGCCTCGTTGTTATTTAGCTT
TTTCATTTTATCTCAACGGTTTAAAGAACTCTTGCTAGGTTAGCGAAAAT
NTAGCTTTTTCATTTTATCTTAACGGTTTAAAGAACTCTTGCTAGGTTAT
AGCGGAAAAGTATTTCATCAAATAATGTAATGTTAATCTAGTATTTTCCG
TAACAAGTTTTGAACTGGGCCCGGGGACTGGGCCTCTGCCTATCTCGTCA
GGATCAGGAAAATTGACCGACAGAAAATTGCAAAAAAAACATTTGTTTCG
CCGCACATACCGTCACTCGATAAACCCACTACCCCAAAGGCTATTCTAAA
TATCAATTTTCACATCTAATATAAATTTATTTGATTCTTAGGTTATGAGA
AGAAGCCTGCATACAAAATCATCAACAAAATCTATAAACCTTCAACGACA
TCGACAACAACGAAAACGACTTTGACTACGACGATAGGAAACAAAACCAA
AAACAAAGGAGACCACAATGCAATTTCCGAAAAGAGATGGTTGGCTGAGA
CCAATAAAGATCACCAAGCCATTTACAGTCAGCTGAAACCCGTCCAATGG
TACAAAGACAACTGGAAAGGCGATTGTCCTTATCCGTCCTATGTGTTTCG
AAAGCTTGAGAGTCAATCTTGGTTTCCATTATATTTGCATCACCAAATGA
AAGTCAATCTATCTCAAACCATACCAAAACGACTCAAACAAAGCTGTACC
AGGTACTATACTGTGTGTTCCGAAAAAAGCGGATAAATTTTTATGTAGGG
GATGAGGGACATGATGGAGTTTTTACAAGCTCTCGTTAATCAGTAATAAA
ACAATTTTGTTAGTTTTTCTAAAGAACGCGTCATTCTTATTACTTCAAAT
GACTAATTATTAAAGTATCTTATAAAAACTCCAGCATCGTGTATTCCCGT
CCGAGAGTTACTACAAATTTGGAAAATAAAACTTAGTAACCAAATTTAAA
ACTCAAAAACACAAAGACAGGGGTACCTCTCGGACAGGAGTTTTACCCCC
AGTGTGCATCCCCCATATTACCTTATCGGGTAAAAAAATGTCGGAGTTTT
ATTTAGTCGGGGTTTTTTTTCGTCAGGGAAAAATTTCGTCACCTAGAGGC
ATTTTCGTGACTTTCCCCCGACCAAAATTCCAAATTCGTCATTTTTCCCC
GACGAAATTTACAATTTAGTCACTTTCACCCAACTTAATTGTCCAAAGGA
AATGGTTTCCTTCACTAGCTCGAAAAAAGATCTTGTAATTTGACGTTTAA
AGCACTATTTTCGTTTAATAAAGGTGTAAAAAATTTGAATTTTAATTTTG
GTTGGGGTTTAAAAATTGGGTAAAAGTTTTGGTCGGGGATAAAAAAATCG
GGTAAANTGGGGTTTAAAAAATTGGGTAAAAGTTTTGGTCGGGGATAAAA
AAATCGGGTAAAAGTTTTGGTCGGGTGATAAAATATCGGGGAAAAAATTC
ATCGGGGGAAAATTTCGTCACCCCCTCAAAATTTTCGTCACTTTCCCCCG
ACGATTTTTTCCCCGATAAGGTATAACATATCATATGGTATGTACGGAGC
CTACCGTTTGACGTCTTTGACTGACAAACTTACTTTGTCTTTCCATTCGT
AGATGGTGGCACGCACATGCAGAAGCAGATTTTGTCGACCTTCCACATCG
CAAATTTACATGGAAAGAACAGAAACCCAACCACGTGCGTCCTAATTGCT
CTTTTGGACAAAAACGCAGACCTTGGACCCGATGTTCAAAGAAACATCAA
GAGTTATGGACTGTGTTAGATAAGCTAGGTGTAATTTACTTCATACGGTC
TGGGTCCGAACTTGGAGTGATCAGAGGCAGTTCTTACCTCTCCATGGGTG
AGGAATGGGACGTCGATGTCTTTGTAGATGTACCACAAGAAAAACTGATT
CGATTACTAAGAAATAAACTTAATCCTCGTCCTCATGTAGATGGATCCTT
AAAAAGCGTTACAGCTGAAACACATTGGCACGTGAAAGGTTGCCCTGAAA
TCCACATGGTTTTTAATGAGTGGATGGTTGATCAAATGGTGCAAGAAATA
CCACGACCAACACACGATAGCCTGTGTACTTGTTATATGAACTCTGCCAA
ATTAGCTTGCCATAAAGACGCGATAGAAAGAATGTATGCACAATATGGAC
CTTCTTGGTTTGTCCCTCTCCATGCAAAATTTCTTGATTTTCCTTGGGCA
GCAAGAGGCAAAAATATTCAACCTAAACTTAAAAAGTTAACATCTCCAGA
TGGAATAATTTACGAAAAAGCAGTGAGAGATCTTGATCGTAGCATCCAGT
ATACAAAATACGATATGGAAATGATNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGACCTTCCACATCGC
AAGTTTACATGGAAAGAACAGAAACCCAACCACGTGCGTCCTAATTGCTC
TTTTGGACAAAAACGCAGACCTTGGACCCGATGTTCAAAGAAACATCAAG
AGTTATGGACTGTGTTAGATAAGCTAGGTGTAATTTACTTCATACGGTCT
GGGTCCGAACTTGGAGTGATCAGAGGCAGTTCTTACCTCTCCATGGGTGA
GGAATGGGACGTCGATGTCTTTGTAGATGTACCACAAGAAAAACTGATTC
GATTACTAAGAAATAAACTTAATCCTCGTCCTCATGTAGATGGATCCTTA
AAAAGTGTTACAGCTGAAACACACTGGCGCGTGAAAGGTTGCCCTGAAAT
CCACATGGTTTTTAATGAATGGATGGTTGATCAAATGGTTCAAGAAATAC
CACGACCAACACACGATAGCCTGTGTACTTGTTACATGAACTCTGCCAAA
TTAGCTTGCCATAAAGACGCCATAGAAAGAATGTATGCACAATATGGACC
TTCTTGGTCTGTCCCTCTCCATGCCAAATTTCTTGATTTTCCTTGGGCAG
CACGAGGCAAAAACATCCAACCTAAACTTAAAAAGTTAACATCTCCAGAT
GGAATAATTTACGAAAAAGCAGTGAGAGATCTTGATGGTAGCATCCAGTA
TACAAAATACGATATGGAAATGATTCTAGCTCAACTTAATGTTCTACAAT
CTTCAATTTTAAGCAAGTATTCGTCGGGTTGAAAATATATAAATCACACT
GTTCACTCTCTCTTATTCGATCTTCAAAGAGTTAAAAAACTTTATTCGAA
ATACAGAACTCTACTGCTACTATTTCTTTCCGTTAACCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029867XLOC_029867Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046809-exon-scaffold_117-1575043694:456930..457151TCONS_00046809-exon-scaffold_117-1575043694:456930..457151Clytia hemisphaericaexon
TCONS_00046809-exon-scaffold_117-1575043694:456372..456429TCONS_00046809-exon-scaffold_117-1575043694:456372..456429Clytia hemisphaericaexon
TCONS_00046809-exon-scaffold_117-1575043694:455951..456006TCONS_00046809-exon-scaffold_117-1575043694:455951..456006Clytia hemisphaericaexon
TCONS_00046809-exon-scaffold_117-1575043694:455705..455755TCONS_00046809-exon-scaffold_117-1575043694:455705..455755Clytia hemisphaericaexon
TCONS_00046809-exon-scaffold_117-1575043694:453400..453760TCONS_00046809-exon-scaffold_117-1575043694:453400..453760Clytia hemisphaericaexon
TCONS_00046809-exon-scaffold_117-1575043694:452456..452499TCONS_00046809-exon-scaffold_117-1575043694:452456..452499Clytia hemisphaericaexon
TCONS_00046809-exon-scaffold_117-1575043694:450813..451656TCONS_00046809-exon-scaffold_117-1575043694:450813..451656Clytia hemisphaericaexon
TCONS_00046809-exon-scaffold_117-1510915933:456930..457151TCONS_00046809-exon-scaffold_117-1510915933:456930..457151Clytia hemisphaericaexon
TCONS_00046809-exon-scaffold_117-1510915933:456372..456429TCONS_00046809-exon-scaffold_117-1510915933:456372..456429Clytia hemisphaericaexon
TCONS_00046809-exon-scaffold_117-1510915933:455951..456006TCONS_00046809-exon-scaffold_117-1510915933:455951..456006Clytia hemisphaericaexon
TCONS_00046809-exon-scaffold_117-1510915933:455705..455755TCONS_00046809-exon-scaffold_117-1510915933:455705..455755Clytia hemisphaericaexon
TCONS_00046809-exon-scaffold_117-1510915933:453400..453760TCONS_00046809-exon-scaffold_117-1510915933:453400..453760Clytia hemisphaericaexon
TCONS_00046809-exon-scaffold_117-1510915933:452456..452499TCONS_00046809-exon-scaffold_117-1510915933:452456..452499Clytia hemisphaericaexon
TCONS_00046809-exon-scaffold_117-1510915933:450813..451656TCONS_00046809-exon-scaffold_117-1510915933:450813..451656Clytia hemisphaericaexon
TCONS_00046809-exon-scaffold_117-1491911889:456930..457151TCONS_00046809-exon-scaffold_117-1491911889:456930..457151Clytia hemisphaericaexon
TCONS_00046809-exon-scaffold_117-1491911889:456372..456429TCONS_00046809-exon-scaffold_117-1491911889:456372..456429Clytia hemisphaericaexon
TCONS_00046809-exon-scaffold_117-1491911889:455951..456006TCONS_00046809-exon-scaffold_117-1491911889:455951..456006Clytia hemisphaericaexon
TCONS_00046809-exon-scaffold_117-1491911889:455705..455755TCONS_00046809-exon-scaffold_117-1491911889:455705..455755Clytia hemisphaericaexon
TCONS_00046809-exon-scaffold_117-1491911889:453400..453760TCONS_00046809-exon-scaffold_117-1491911889:453400..453760Clytia hemisphaericaexon
TCONS_00046809-exon-scaffold_117-1491911889:452456..452499TCONS_00046809-exon-scaffold_117-1491911889:452456..452499Clytia hemisphaericaexon
TCONS_00046809-exon-scaffold_117-1491911889:450813..451656TCONS_00046809-exon-scaffold_117-1491911889:450813..451656Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_117supercontigscaffold_117:450813..457151 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.140493	0.109671	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046809 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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